RNA id: XM_043249274.1


Basic Information

Item Value
RNA id XM_043249274.1
length 9648
RNA type mRNA
GC content 0.45
exon number 28
gene id LOC122351886
representative False

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 18980278 ~ 19249175 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AAGGAAAACAAGCCAATCGCAATTCAGTATGTAAATAGATGTTAGAAAGAAGACCAATCACAATGCGGTTTGGGAATCTTCTGGTGACGTCACCTGCGTCGATCGCTGTTTCAAAAAGGTGTCCACACTCAAGTTCTGTAGATACAGAGGTGAACATGCGTTTCCCGGAAATTCATGTTGGGAGAACCTTTGGAAAAACCTCTAAATGTGAACAAACGCCCAGTTGAAGAAGACGCCGTATGCAGAACAAGACAGGTGTATTTAGAAACGAGCTCTTCTCGAGCCAATCAAAAACTTACGCCGAGCACTGGAGGGCGGGTTCTTGTCTAATTATGCAGACTTTTGACCAATCGAATCAGCGGAGGGCGGTGCGGACTTCGGTGGGGGCGTGCCTCAGGCTTTGTGCCGTCGCAGCGCTGAAGAGCGTCTGAAGAGAGTAATGGCATGAGCCTTGCGTCGagatcctgtcaaagcactatACAGAGAATTTCTCGCACCTGAACTTTGAGACCCTTTCCTGAGGActattttaccatttaaacGGGACGTGTTATTACCTTACATACTCTGACACGCAACAGCAGCACTTGAGAAGTCACTCCACCGGCAGTTGCGTTCCTGTCTtgagacatttaaaataaaaggataTGGTGTTGGACATGTGAAATACACGGGAAACTTCAAACATGAAGCTGGCATCTTCTCTGTGTTGCCTCGGCTTTCTTCTCACTTCTGTGGCTGTCCGTTTCAGCGACTCGCAGCAAGTATGCCCTGGCACAGAGAATAAACTGAGTACTCTGTCAGACCTGGACCAGCAGTATCGGACCCTTCGTAAATACTATGAGAACTGCGAGGTGGTGATGGGTAACCTGGAGATCACCAGCATCGATCGCAGTCGTGACCTGTCCTTTCTTAGGTCCATTCGTGAGGTGACCGGTTATGTTCTTGTGGCACTAAATCAATTTGAGTATCTGCCCCTGGAGAATCTGCGCATCATCCGCGGCACCAGACTGTATGAAGACCGCTATGCTCTGGCCATCTTCCTCAACTACCGCAGAGACGGCAATTTCGGGCTCCGTCAGCTTGGCCTTAAGAACCTTACAGAAATTCTCAATGGAGGGGTGTACGTGGACCAGAACAAGTTCCTGTGTCATGCCGATACTATCCACTGGCAGGATATAGTGAAGACCGCTCGCCCTGATCACCTGGTTGTGCCGTCCAATAGCAGCAGCTCATGTCAGAGGTGTCATAGAGGCTGTAATGGGCGCTGTTGGGGGCCGAAAGAAGACCAGTGTCAGAGCTtgACGAAGACGGTGTGCGCCGAGCAGTGCGATGGCCGATGTTTTGGGCCGTACGTCAGTGACTGCTGTCATCGCGAGTGTGCTGGAGGCTGTTCAGGACCAAAGGATACGGACTGCTTCGCCTGCACTAATTTCAACGACAGCGGTGCGTGTGTGACGCAATGCCCTCAGCCCTTCGTTTATAACCCCACCACGTTCCAGCTGGAGCACAACCCACGAGCCAAATACACATATGGAGCTTTCTGCGTCAAAAAATGCCCACATAACTTTGTGGTGGACCACAGCTCCTGCGTCAAAGCTTGTCCCAGCAACAAGAtggagatggaggagaacaGAATCAAGATGTGCATCCCTTGCACTGATATCTGCCCAAAAGCATGCGATGGGATCGGCACAGCTAGCCTCCAGACGGCTCAAACCGTGGACTCCAGCAACATTGACAGATTCATCAACTGCACCAAGATCAACGGAAACCTGGTGTTCCTCATCACAGGCATTAAAGGGGACGTATACCACAACATAGAGCCCCTGGATCCAGAAAAACTCAACGTGTTCCGCACAGTTAGAGAGATCACCGGCTTCCTAAACATTCAGTCCTGGCCAGAAAACATGACTGATTTGAGCGTATTCTCCAATCTGGCAACCATCGGTGGCAGGTCTCTCTACAGTGGCATCTCTCTTCTGGTTCTAAAGCAGCAGTGGATTTCCTCACTGAAGCTGCAGTCTCTCAGCGAGATCAGTGCTGGAAACGTGTACGTCACCAACAACAGTCAACTCTGCTACTACAACACCGTCAACTGGACGCGACTCTTCCGCACCAACACCCAGAAGTCCCTGATCCGCAACAACCGTGACCCCAAGGAATGCAttttggaCCGTATGATATGTGACCCTCTGTGCTCTGATGCTGGCTGCTGGGGTCCGGGGCCCGACCAGTGCCTGTCCTGTCGTTTTTTTAGCAGGGGACGTACCTGTGTCGAATCCTGCAACCTGCACGAAGGGGATGTACGCGAGTTCGCAAATGGATCAGTGTGTCTGGAATGCGATGCGCAGTGTGAAGTGGCGGACGACGACGGTCTTACCTGCACTGGGCCTgGTCCTGATCACTGTGTTAAATGTCTTCACTTTAAAGACGGACCCAACTGTGTGGAGAAATGCCCTGATGGCCTACAGGGAGCAAACAGCTTCATCTTCAAATATGCTGAGGCCAACAACGAGTGTCACCCTTGCCATGTCAACTGTACCCAGGGATGCACAGGACCTCGTCTGCAAGACTGCATTGGCATGATGGACAGGACTCCCCTCATTGCGGCTGGGGTTATTGGAGGATTGTTTGTGGTGATCATCGTGGGCCTGAGCGTTGCCATATCAGTGAGGAGGAAGAGCATCAAGAAGAAGAGAGCCTTGAGACGCTTCTTGGAAACTGAGTTGGTGGAGCCTCTGACACCCAGCGGTGCGGCCCCGAACCAAGCCCAACTCCGAATTCTGAAAGAGACTGAGCTGAAACGGGTCAAGATTCTAGGAGCCGGGGCCTTTGGCACTGTTTACAAGGGCATCTGGGTACCTGAGGGTGAGACTGTGAAGATTCCCGTTGCCATAAAAATCTTGAACGAGGCGACGGGCCCCAAAGCCAATGTGGAGTTCATGGATGAGGCTCTGATCATGGCCAGCATGGAGCATCCTCACCTGGTGCGGCTGTTGGGCGTTTGTCTAAGCCCCACCATTCAGCTGGTCACTCAGCTCATGCCCCATGGCTGTCTGCTGGACTACGTCCACGAGCACAAAGACAACATCGGCTCCCAATTACTGCTCAACTGGTGTGTTCAGATCGCCAAGGGTATGATGTACTTGGAGGACAGGAGACTCGTGCACAGGGATCTAGCTGCTCGGAACGTCCTAGTGAAGTCACCCAACCATATAAAGATCACTGACTTCGGTCTGGCTCGCCTTCTGGATGCAGATGAGAAGGAATACAATGCAGACGGGGGCAAGATGCCTATAAAGTGGATGGCTTTGGAGTGCATTCACTATAGGAAATTCACCCACCAGAGTGACGTATGGAGTTACGGAGTGACTATCTGGGAGCTGATGACATTCGGAGGAAAGCCGTACGATGGAATCCCTACCCGAGAGATTCCTGACCTGCTGGAGAAAGGAGAGAGGCTTCCTCAGCCTCCCATCTGCACTATTGATGTCTACATGGTCATGGTCAAATGCTGGATGATAGATGCAGACAGCAGACCCAGATTTAAGGAGCTTGCAGCAGAGTTCAGCCGAATGGCAAGAGATCCACAACGTTACCTAGTCATCCAAGGAGACGACCGCATGAAGCTGCCCAGCCCCAATGACAGTAAGTTCTTCCAGAGTCTGCTAGATGAAGAGGAACTGGAGGATCTGATGGATGCCGAGGAGTATTTGGTGCCACAAGCCTTCGGTATTCCTCCACTAGCATACACAACCAGATCACGCATGGACCCCAACAGAAACCAGTTTGCGTACCAGGACGGCAGCTTCGGCATGGAAGAGATGATGGCCACTATCCCACGGGTTGTGGCTGTGTCCGCGGTCAGCCCAGGCTGTTCTGCTCAGAAGCAATCCATGACCCAGCAGGGGGCCTCGGGGTCCTCTGAGGCATTTGAAGACAGCCGCTGTAATGGCACTCTCAGGAAGAAGGCTTCACCCAGGGCGAGCACCGGCGAGGACAGCAGTGGCCAGCGTTATAGCGCAGATCCAACTGTGATACTGTGTGAGCGCGGAGCGAGAGCGGAGACTGACCAGGAAGGATACATGAGTGCCATGCAGGACAAAAAGCCCTCAGATTATCTCAACCCTGTGGAGGAGAACCCGTTTGTCACCCATCGCAGAAACGGAGAGGTCCACACTCTCGAGCGAGGTTACCACAGTACCTCCAACGGACAGCCCAAAGTGGAGGATGAGTATGTCAATGACCCGTTATACCTCAACACCTTCCATAACTCTGGCGAAAAGAGTCACGACATATTGAGGAAGAACGGAGTCCCTGTGGTGCACTCAGCAGCGGTGGCAGCAGCAgtagtagcagcagcagcaaacaGTGGAACTTCCACCAGCCAGAATCTTTCCCAAACCATGCAACCAGTGGCATCCAACACCCACGTCACAACACAGCCTCTCTACCAAGGCAAACAAAGCATCTCCACCCTCTCAGGCCACACCCTCCACTCTGCCCATCCCGGACACACCCTACACCCGACGCACACCCTCCATCCCGCTCACTCCGGGACCATCAAGGCTGACATAAAGCCCAAAAAGACATTTGACAATCCTGAGTACTGGCAGCACAGTCTTCCCCCCAAGGCCACTCTCCACAACCCAGAGTATCTGCAGGATTGCAGCACACGCTTCTTCTACCGACAAAACGGACGGATCCGACCTGCCGTCGCTGAGAACCAGGAATACCTGTCCGAGTATGCGCTAAAACCGGGCACCGTGTTGCCACCTCCTCCCTACCGACAGAGAAACACTGTTGTGTAGCAATGATGGCCCGAGACAAACAAGGAAAGTTGGAGGTAAAGAGTCATAGTGTGTTCTCACCCTGGCTCTCACACCAGCATCCCGATCTCTCCGCTCCTCTCTGAACTGGATTGAACACCCGACCTCCAATGACCTGGAACTGATCCACTTGAGTGAGCTTCTCCTCCAGAGGCATTGGTCACAGATGGCCACATCAATCAAAGCTCCTTCTTGCTTGTCCCTCCTCACTTCAATCCCCATTAAGACCAGTTTCCCCTACCTGAGCCCAGCTTTTGGAAAGCGACACTCTTCACAGAAATTGGTAGATGTCACACTCATCTCATTGAAAGCAAGTACTGATGTTGACGTGCAACGTGGGTTGATCCAATAGCAGAGAGGAGTCATTCTTTTGTgcaattaaagaaatgtttatcgTTTATCTTGTTTTGGGATTTTGATTTGAAGATACGCTAAGATCTACTGTAATTTATGACTTTGGTTAGCATAGATTATTTTAGCACTCCatacatgattttattaagcAGATGTGTTGTATGCAAATCCGTCATATTGGGAATATCGTTGTGGGACAAAAGGGCCCAAAATGGCTCTCAATATCGTCTACTGATTGAGACTGAAATGTAAGCGACAGGACTGGCTATATGCTACATGCTGTTATATACAACAAAACATATGTTGATTACAGTGTGGTGTCAACTGGGACCTTCTCGAATGGCGCATCTTCAAAAGACACATTGTGTAATGTTCTGttcaaaatatttgcataattcatCTGCACATGTATTGCTCAAACAAGGcactttttattactttcattgagccattctttcttcatttttgaCTCATAAGTAGGACTGGAATGATTGCCAACTGGAAACAGTCTTGCGGCCTGTAAAACTACATGTGCAAAGGCAATGACTAGTGCTCCACGCTGAGAACAGTATCTCCATGCATATGAACAAGTCCGTACTGCAGCCCGCCACAAAATCAATAACTTCATAAAAGCTGATCTGCAACAGTCtactgtaataacattttttattgttgatcTTTCCAACATTGATCTGTATGCTCACAGAGTTGTCACCTTAAGGTAGCCTTccttattttgtcatttaatgtgTGGAACGAAAACCCAGATTGGGTTTACCTTGAACTTTAGAAGCTAAAATCAATACTAGCGACCAAGAGCATCCACGTAGATGGAGGAGAATGGATATTTACACTACAGAGCTACAGAGGCCCAGCATTTTACGGAAGACTCGACAGCACAACGCCTGCCTCCTCTTCTGAAATACGGCCGGAAAACTGTTAGAACTATATAAACTTGTCCCACATGCAAGTCAATGAGATGCACAAGACTTGCGATCAAGATGGCAGCTTTTCTAGCTGGGTTCATTAAGGCATGTTTTGAGGGACGTTTTGAAATCAAGAAGGCAGGAGTACCATCATGCAGTACCATGAGGAACAAATGAGAATGTACAAATGGAATCATTTGCCCCGAGGTCAGAGATGAGACTGCCTCAAATCTGTCAACTCCATTTGAACTGTCTCCCATAATGACTTTTCTATAAGAAGTGTCTCATGGAGCTACACTGATAGTAATTTAGGAAGATAACGCATCTTACTTGGGCACGTTGTTCTCCTCAAATGGTGAAAAACAACTTTGCTACATCTTCGGTAAAACCACACCATCCAGGTTTCTACAACTAGATTTGTGTATAGTTTGAACACTGCCAGTCActattcttttttgtttagGGGAATAATCATGATGTTATGTTGCTGGTGTGGAGATGTGAAATGGTTTTATAGCACTTAACAGCCTGGCACAACCGCATGAgtttgttttaaacatcaaCGGCACTGATTGAATActcatttattataatcataGCTACATAACGATAGCACACACCACCCGCCCATATACTTTTGTTTTGCTCTATCATTTTTTTGCCTttgaatgttgttgttttttttctgcttatgAATATGAAGGTTTACGGTTACATGGAGCACTTTAATTAATGAACATAACAAAGATAGAGCGGAGTTCTTTTCATTGTGGGAATTGCTGTTCCCATGCGATAACAGATTagacaaatgacatttttggcTCTCTACTGGAAACCAAATCAGGGAATGTTAGTGACGCGCAGTGATTTTGCCAAACACAGATGTTTACTAATTGAAGTATTTATCTCAAGCTTTCatccttaaaaataatgtaattaggGCAAAATTTAAGGTGGATCACTAAGAttatctatataataataatagacacCTTTACAGGACAAAACTGATACTTGAAATTGCTTAATTTTAGCTCCTGTAGAGTTTGGAAAGTAGGTTAACAGTTAGGAAGTATAGTGTGTAGAACTAAGgccaaattatattttttattcatctttcttGTATTTATGATGAACCCAGTGCATAGTTATCTAAAAGATTCTGGTTGGGGTTATGAAAAGCTCCAGAACCTCCATGAAAACCCTCTTATTTACAATTTCTAAGAGTTTTGAAGCTTTCAGTTACCTTCTCTTAGCCTAATTAAAGGCAAGGACCTCGTGCATTTGCTACTGATAACATCACCGCAGGTCTGGGTGTTTAAATCTATATGTAGCAACTGCTGTGAATACAGGGTGGGTAAAGATCTACTAAATCCATCAAGTGAGGAACAACTAGGCCAAAACAGAGGGAGAAGAATACCTGATGTGTGAGGGTTACTGTTTTTGAAGATTTTCACAGTTAGAGACTGTTATTGGGTGGAACTGATTATCTTTGTAAACATTTCCACTTTCTAGGAACTCTAGGAAATGAGGTTTGGATGGCGCACAACATTTTGTCTCACTGCACATTGTTCATTGGTGACTCACATTTCGCAGAATCAAGAAGAACATGCGAAAGACATCTTTACATGaacttgtgtgtatatatatatatatatatatatatatctgaaggGGCTTGAAGATAATTAATCAAGAGTAGTGAGATACTGTTGAAGGCTTGTGTTCCACTTTTTTAagcattgctttaaaaatctgAAGAGTGAGTTCACTAAGTTTCAGTGCAACACACTTGAATCAGCTCTTTAAAATGCTTCAAGTGTGCTGGTTGTCATGCTGTTTTTCATCATTCAATTAATGATCAGCAACATCTTTTATATGATTTCTGTTAAGAGTAATAGGCCAATAGCATTGAGTTAATGAACCCAATTTAAACAAAGGATGTGTAcgctaaaataataaagactTAATTGACAGTAAATACAGcgaaaaaactattttgctatatttagtGTTTGGTTAAACTGACTTGTGGGTGGCTGATTGGAAAGTGTggcattttgaattaaaaaatcaaATGCAGAAGCACTTAGTGAATTCACCCTTTGatccttttttgtttgtttttttagcttttctCCTTCATTTCTAACATGTATCAGCTAGTTgcaatatacatgtaaaatcCACGTACAATttcattaatgtgttttaacgggccctacaaaaaaaactttttttataatactatgtgatcatatattttattgtatagaGAGGCAATAAGCTTTACAAAACACAGTGCGTTTCAGTTTGTGTTATCACATTACTGTTAAGTTATGAGTATGTTAAAGCACTTCATGTTTAACACCACCAGTTaatgtcttttcttttataatttctCTTGAAATGCTCATTGGAACTTATTTTGCATGTGGCAAGGTAGTCAGAAAGTATCGGTAGACTAagcacagttaaaaaaaatcgttttatattacaaaggacaaaaaagggaagaaaaacacCTTCCTGCAACATTGACATTTGGAATGGTTGTTCCTCATGATTTTACTACTGTACGTCAATGAGAAAATgtgaatagtatttttatagaCAGTTGAATTGGCCAGATGTATTTGTAAATAGCTGAGAAACTTATGCTCTTTTTGgactgacctttttttttttcccccattatGTTTTGTTGACTTATATTGTGTGTGACCGGTTATTCTTATTTGATGGCTGTATATATCTGTAATTTGAACAGCACATATTTGATTTTGTAGATCTTGCAGGTTCTTTTAGTACTTCGGTGTGTTTTTCGTGATCGTATGTAGCCCGGCTtggtgctttttgtgttttttaacctcTGCCCGTGTTCAAGAGGTAGgagatgttttctttctgtcaGGTATAGCCTCCCTCCATCACCCCacaattttctctttttgtacAGAATCCAGCGTGGGGAATCTGCAGCTGTGTGACGATAGCATTTGTATCTCCCAGGAATCTCTCTCGAACTCCAGTTAGGCTTTTCCTGACTTTAGTCCCGGTCATATGGGTAGTGTCTAGTTCTTTCTCAGTATGTAATTCATATTCATGCACAATCTCCCATCTCTTCACATCTGCAGCCAACCGCACCGTGAGCGAGCTCAGGCTTAGCCGCGAGCCACGAGCGCGAATACGGTGAAAAATGATGGCAAAAGCTGAGCTCAACCATCTCAAATACATCCGCTATGGTGTTCCTCCAAGAGATCTGTAAGTCAGAGTGTATTATTCACGCTGTCAAGTGGACTAATTGCCTGGAGTGGTGTTCATTTGGCCACGTTGTTATTGAGTGACGGCTCATCAAAACTAAAGTCAAGTCTTGTCATTTTTGACGCCCATCTTCAGCTCTGGTCACAGTAAATTTCTTCACCACAGCTTTCCCATTCCCCAAAGCTAGAGCATTTAAATACTGTTTCACAGTTTTGTTACCtgaatctatatttttaatttaatataaataaataaataaatacaacaccTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU105862 lncRNA downstream 7376 18911843 ~ 18972902 (-) False LOC122351248
XR_006251715.1 lncRNA downstream 7376 18941516 ~ 18972902 (-) False LOC122351248
XR_006251716.1 lncRNA downstream 7376 18941516 ~ 18972902 (-) True LOC122351248
TU105832 lncRNA downstream 238053 18737756 ~ 18742225 (-) True G71471
TU105739 lncRNA downstream 288189 18688498 ~ 18692089 (-) True G71424
XR_006251824.1 lncRNA upstream 2463 19251637 ~ 19254248 (-) True LOC122351981
XR_006251712.1 lncRNA upstream 194271 19443445 ~ 19459100 (-) True LOC122351235
TU105981 lncRNA upstream 209613 19458787 ~ 19543847 (-) False G71587
XR_006251749.1 lncRNA upstream 247738 19496912 ~ 19508085 (-) True LOC122351387
XR_006251732.1 lncRNA upstream 270566 19519740 ~ 19525590 (-) True LOC122351304
XM_043248514.1 mRNA downstream 90223 18885444 ~ 18890055 (-) True myl1
XM_043248798.1 mRNA downstream 259831 18709228 ~ 18720447 (-) True tgfbr2l
XM_043248378.1 mRNA downstream 331223 18642470 ~ 18649055 (-) True znf142
XM_043248382.1 mRNA downstream 346674 18626417 ~ 18633604 (-) False ccdc93
XM_043249176.1 mRNA upstream 10555 19259729 ~ 19285223 (-) False ikzf2
XM_043249178.1 mRNA upstream 10555 19259729 ~ 19285209 (-) False ikzf2
XM_043249175.1 mRNA upstream 10555 19259729 ~ 19284034 (-) True ikzf2
XM_043249179.1 mRNA upstream 10555 19259729 ~ 19284027 (-) False ikzf2
XM_043248417.1 mRNA upstream 297050 19546224 ~ 19568760 (-) False bard1
XR_006251863.1 other downstream 410396 18569755 ~ 18569882 (-) True LOC122352185
TU105258 other downstream 1724787 17235872 ~ 17255491 (-) True G71118
TU104984 other downstream 2156503 16817140 ~ 16823775 (-) True G70986
TU104983 other downstream 2156584 16817140 ~ 16823694 (-) False G70986
TU104521 other downstream 3208414 15771421 ~ 15771864 (-) True G70663
TU106113 other upstream 471324 19720498 ~ 19721737 (-) False ankar
TU106134 other upstream 547083 19796257 ~ 19804599 (-) False glsb
XR_006251780.1 other upstream 632650 19881824 ~ 19893315 (-) False mfsd6b
TU106614 other upstream 1239990 20489164 ~ 20503890 (-) False G71938
TU106615 other upstream 1239990 20489164 ~ 20503890 (-) True G71938

Expression Profile