RNA id: XM_043249289.1


Basic Information

Item Value
RNA id XM_043249289.1
length 2964
RNA type mRNA
GC content 0.45
exon number 8
gene id scrn3
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 4120527 ~ 4127013 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATCAGATAGCCCTGCATGCGGATTTCTGTCAAGTGCGGCCAGTTTTGTTTATGgagaaaggaaaaggaaagtAAACACATGTTTAATTTCATCGAACAGAGAAGCGATTCTCGTCACACCTGCTATTTTTATATACGCTGAGTCGGCCAAGTTGTTTAGGTTAAGATGTACCCGACCTCCTGCGACACATTTGTAGCCCTGCCTCCATCCACGGAGGGTCAGCGGATAGTCTTCGGGAAGAACTCCGACAGACCCTGCGATGAAGTTCAAGAGGTGGTCCACTTCCCCGCCAAAACGCATGAACCGGACGAGAAAGTGGAGtgtacatacatacagataGAGCAGGTGGCTCAGACGTATGCCGTGGTTCTGAGTCGTCCCGCCTGGCTGTGGGGGGCGGAGATGGGGGCAAACGAGCATCAGGTGTGCATCGGGAATGAGGCGGTGTGGGGGAAAGAGAGCGTGGACGGCGAAGAGGCTCTCCTGGGCATGGATCTCGTCAGGCTGGCTCTGGAGAGGGCAGACACCGCTCAGCGGGCTGTAGACGTCATAACAGATCTGCTGAAGAACCACGGCCAGGGAGGGAACTGTATGGAGGACCAGTGTGGATTCAACTACCACAACAGCTTCCTCATATCAGACCGCACGGAGGCCTGGGTGCTGGAGACTGCTGGGAAATACTGGGCGGCAGAGAGAGTGGAGGcgGGCTATCGAAACATCTCCAACGAGTACTCCATCACTACTAAGATCGATAGGGAGCACCCGGAGTTGAGGACGTATGCGGAGAAGCAGCGCTGGTGGAACGGAAAGACTGAGTTCAACTTTGCTAAGGTTTACTCCTACTCCAACACAGCCCGGATCGAGGCCGCAGAGGGACGCTACTGTGAGGGACGCAAGCTCCTGCAGAAGAGCTCAGGCCACATCACAGCGGAGAAGATGATGGAGATTTTGAGGGATAAGGAAAGCGGTATCAACATGGAGGGGATGTTCATGACCACAGGAAGTATGGTGTCTGTAGTCCCGAAAGACCAGAATTTACCCGGCGTCCACTTCTTCACGGCTACTCCAGACCCCGAGCGGTCCGTCTTCAAGCCGTTTGTTTTCGTAGTGGATATAAAGCAGCTGAAGCACACGTGTTCTCCGTGTTTTGGAGACGAGGATCCGGTGAAGAAGAAACCTCGTTTCCAGAGCAAACCCAACCGCAAACACCCCCTGTTTCTGAAGCACGAGGTGGCCGCCGCCGTCATCGACAGCAACGGGGAGAGAGGACAGAAGATCTTGGAGGAATTGAGAGCGCTGGAGACGCAGAAGTTGGCAGAGATGGAGAAATATCTAACGGCGGGGATTGAAGATGCTACGCTGCTGGTTCATCTCTTCACAGACACCGCTGAAGAGGAGTTCAGGGTTTACAGCAACGCCTGAGGCTTAGGTCACGGGCTGTTGGGCGTTTCTTCAACGGAGGGCACTTTTGAACCCTTAGTTTCACTAAATTGCAGATTGATTGGCGTggaagcataataaaaatattcagctCACGTGTGATTACATCATATGCCTTGAAATATAATTCGCTAATTGTATTCAGTGCTGAACTCTAAAAGTCCTTTTTTATCCAATATAATCATAATTCATGTCATTCCTCGTGGtcttataatattataatgattctAATTATAATAAGGTCCCATTTAGtgcattaatgtaatttattgtttgCATTGTTAGTAAATACATTGTTTGTAAGTTCATGacagcattaaattaaaatgggtCTTTTTATTCAGCATACGTAGTAAACCTATGTTAACAAATTGTAAAGTCTTAATAAATTTTGTGCATCTGAGAACTAAAATCTATATagaaacatcttaaaatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatataaacgaatGCATGGTTAACAAAATCCAAGACAGCTTCATGTTTAAAGACCGCTCAAGCCCTCAGACGCCAAAGTTCCCAAAGTTGAATAAACAGCCCTGTACTGCCATCAAGAGCTAGCTGGAGATGTCCTATTATTTAGACACTTACTGTATGTTTGGATATCATTTGAGATGATTGTACAGAAGGCTGCATGCATTTGAACCTGTTAATGGTTTAGTCCAGGGGTCATCAAGcttcaacacacctgcctggaaggTTCAAGTATACAGAGCAACACCGTGATTaactgcttcaggtgtgtttgattaggaagGGAGCTAAACTCTTCAGAAACACCGCCCTTGGTGACCCCTGGTTTAGTCTCTAATTGTTCTCATTACTGAAATGTACAGTTTATGTCATGGATTGTTGTGTCATGAAATCCGGTGTCAATTCCAGTCATTTTAATGTCTCTATGATGCACAGAAATCCTATGCACTCAACAAACACTTAAAGCTAGCTAATTTATCactttaagaaatgtttcattttgtgaaCAGTTCACCGCTCTAGACCTATTGTATTGTCGAAGCaccttttgattttattaaactaTTCAGTCTTTTGGGGGGTGAGTCTATCAGCGTTACACACCAATATGTTCCCTCTTTGCAAAAACACTCCAAATCTGTCAGATAGCGAGGGCATGTCCTGTCCCTCACATTTTCAGGATTCAGGTCTGGGATGTGGCTGTGTCCTTACGTAACCTCAGTCTCGTTTCCAGCTGAATAAACAGCCTCAAAGTGTGACGTCCCCCCCATCGTTGCTTCGCTGTGGTTATGGTGTTCCTTTGGTTACgtgcagtgttgtttttttaggcCATAACACATTTTCCCACACGCTTTTGGGAGACGTATAATGCGTTTCTGCAAAATGTAGCTAAGTTTAGATGTTTTTCTTACCACCATCTCGGCCCAGACATGTAAAGAATATGGGAGATTGTTGACACATATACTACATAAACAGTACTTTCCAAAAA

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0016805 dipeptidase activity molecular_function

KEGG:

id description
K14358 SCRN; secernin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99979 lncRNA upstream 55569 4064637 ~ 4064961 (+) True G67606
TU99977 lncRNA upstream 81708 4038596 ~ 4038822 (+) True G67604
TU99905 lncRNA upstream 88710 3946534 ~ 4031820 (+) True G67562
TU99916 lncRNA upstream 134596 3984169 ~ 3985934 (+) False cdca7a
TU99748 lncRNA upstream 290758 3828991 ~ 3829772 (+) False G67448
TU100026 lncRNA downstream 29643 4156656 ~ 4157963 (+) True G67637
TU100030 lncRNA downstream 35343 4162356 ~ 4165072 (+) True G67641
TU100051 lncRNA downstream 80677 4207690 ~ 4208541 (+) True G67657
TU100015 lncRNA downstream 90037 4217050 ~ 4219510 (+) False G67630
TU100017 lncRNA downstream 92962 4219975 ~ 4222171 (+) False G67630
XM_043248594.1 mRNA upstream 8305 4109650 ~ 4112225 (+) True sp9
XM_043248534.1 mRNA upstream 134568 3981346 ~ 3985962 (+) True cdca7a
XM_043248533.1 mRNA upstream 139319 3948018 ~ 3981211 (+) False zak
XM_043248532.1 mRNA upstream 139319 3948020 ~ 3981211 (+) True zak
XM_043248084.1 mRNA upstream 174922 3925891 ~ 3945608 (+) True LOC122351193
XM_043248257.1 mRNA downstream 254511 4381524 ~ 4382885 (+) True hoxd13a
XM_043248255.1 mRNA downstream 258426 4385439 ~ 4387003 (+) True hoxd12a
XM_043248258.1 mRNA downstream 262635 4389648 ~ 4392011 (+) True hoxd11a
XM_043248345.1 mRNA downstream 267703 4394716 ~ 4397578 (+) True hoxd10a
XM_043248300.1 mRNA downstream 271710 4398723 ~ 4401072 (+) True hoxd9a
TU99910 other upstream 136948 3981527 ~ 3983582 (+) False G67566
TU99912 other upstream 169219 3948036 ~ 3951311 (+) True G67566
XR_006251861.1 other upstream 197652 3913638 ~ 3922878 (+) True LOC122352174
TU99551 other upstream 924009 3194795 ~ 3196521 (+) False LOC122351419
XR_006251792.1 other upstream 2391135 1713813 ~ 1729395 (+) False bpifcl
TU100018 other downstream 14041 4141054 ~ 4222171 (+) True G67630
TU100016 other downstream 90037 4217050 ~ 4220395 (+) False G67630
TU100101 other downstream 283863 4410876 ~ 4413142 (+) False hoxd4a
TU100144 other downstream 430130 4557143 ~ 4562602 (+) True G67717
XR_006251862.1 other downstream 582040 4709053 ~ 4717233 (+) True rbm45

Expression Profile