RNA id: XM_043249290.1


Basic Information

Item Value
RNA id XM_043249290.1
length 1451
RNA type mRNA
GC content 0.54
exon number 8
gene id scrn3
representative False

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 4120527 ~ 4127013 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGAATCAGATAGCCCTGCATGCGGATTTCTGTCAAGTGCGGCCAGTTTTGTTTATGgagaaaggaaaaggaaagtAAACACATGTTTAATTTCATCGAACAGAGAAGCGATTCTCGTCACACCTGCTATTTTTATATACGCTGAGTCGGCCAAGGTTAAGATGTACCCGACCTCCTGCGACACATTTGTAGCCCTGCCTCCATCCACGGAGGGTCAGCGGATAGTCTTCGGGAAGAACTCCGACAGACCCTGCGATGAAGTTCAAGAGGTGGTCCACTTCCCCGCCAAAACGCATGAACCGGACGAGAAAGTGGAGtgtacatacatacagataGAGCAGGTGGCTCAGACGTATGCCGTGGTTCTGAGTCGTCCCGCCTGGCTGTGGGGGGCGGAGATGGGGGCAAACGAGCATCAGGTGTGCATCGGGAATGAGGCGGTGTGGGGGAAAGAGAGCGTGGACGGCGAAGAGGCTCTCCTGGGCATGGATCTCGTCAGGCTGGCTCTGGAGAGGGCAGACACCGCTCAGCGGGCTGTAGACGTCATAACAGATCTGCTGAAGAACCACGGCCAGGGAGGGAACTGTATGGAGGACCAGTGTGGATTCAACTACCACAACAGCTTCCTCATATCAGACCGCACGGAGGCCTGGGTGCTGGAGACTGCTGGGAAATACTGGGCGGCAGAGAGAGTGGAGGcgGGCTATCGAAACATCTCCAACGAGTACTCCATCACTACTAAGATCGATAGGGAGCACCCGGAGTTGAGGACGTATGCGGAGAAGCAGCGCTGGTGGAACGGAAAGACTGAGTTCAACTTTGCTAAGGTTTACTCCTACTCCAACACAGCCCGGATCGAGGCCGCAGAGGGACGCTACTGTGAGGGACGCAAGCTCCTGCAGAAGAGCTCAGGCCACATCACAGCGGAGAAGATGATGGAGATTTTGAGGGATAAGGAAAGCGGTATCAACATGGAGGGGATGTTCATGACCACAGGAAGTATGGTGTCTGTAGTCCCGAAAGACCAGAATTTACCCGGCGTCCACTTCTTCACGGCTACTCCAGACCCCGAGCGGTCCGTCTTCAAGCCGTTTGTTTTCGTAGTGGATATAAAGCAGCTGAAGCACACGTGTTCTCCGTGTTTTGGAGACGAGGATCCGGTGAAGAAGAAACCTCGTTTCCAGAGCAAACCCAACCGCAAACACCCCCTGTTTCTGAAGCACGAGGTGGCCGCCGCCGTCATCGACAGCAACGGGGTCAGCCAACGTCTTTTAATACCGCCAGCATTTGTTAAGTAAGCTCGCGCGCAGAGAGGAGAGAGGACAGAAGATCTTGGAGGAATTGAGAGCGCTGGAGACGCAGAAGTTGGCAGAGATGGAGAAATATCTAACGGCGGGGATTGAAGATGCTACGCTGCTGGTTCATCTCTTCACAGACACCGCTGAAGAGGAG

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0016805 dipeptidase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99979 lncRNA upstream 55566 4064637 ~ 4064961 (+) True G67606
TU99977 lncRNA upstream 81705 4038596 ~ 4038822 (+) True G67604
TU99905 lncRNA upstream 88707 3946534 ~ 4031820 (+) True G67562
TU99916 lncRNA upstream 134593 3984169 ~ 3985934 (+) False cdca7a
TU99748 lncRNA upstream 290755 3828991 ~ 3829772 (+) False G67448
TU100026 lncRNA downstream 31209 4156656 ~ 4157963 (+) True G67637
TU100030 lncRNA downstream 36909 4162356 ~ 4165072 (+) True G67641
TU100051 lncRNA downstream 82243 4207690 ~ 4208541 (+) True G67657
TU100015 lncRNA downstream 91603 4217050 ~ 4219510 (+) False G67630
TU100017 lncRNA downstream 94528 4219975 ~ 4222171 (+) False G67630
XM_043248594.1 mRNA upstream 8302 4109650 ~ 4112225 (+) True sp9
XM_043248534.1 mRNA upstream 134565 3981346 ~ 3985962 (+) True cdca7a
XM_043248533.1 mRNA upstream 139316 3948018 ~ 3981211 (+) False zak
XM_043248532.1 mRNA upstream 139316 3948020 ~ 3981211 (+) True zak
XM_043248084.1 mRNA upstream 174919 3925891 ~ 3945608 (+) True LOC122351193
XM_043248257.1 mRNA downstream 256077 4381524 ~ 4382885 (+) True hoxd13a
XM_043248255.1 mRNA downstream 259992 4385439 ~ 4387003 (+) True hoxd12a
XM_043248258.1 mRNA downstream 264201 4389648 ~ 4392011 (+) True hoxd11a
XM_043248345.1 mRNA downstream 269269 4394716 ~ 4397578 (+) True hoxd10a
XM_043248300.1 mRNA downstream 273276 4398723 ~ 4401072 (+) True hoxd9a
TU99910 other upstream 136945 3981527 ~ 3983582 (+) False G67566
TU99912 other upstream 169216 3948036 ~ 3951311 (+) True G67566
XR_006251861.1 other upstream 197649 3913638 ~ 3922878 (+) True LOC122352174
TU99551 other upstream 924006 3194795 ~ 3196521 (+) False LOC122351419
XR_006251792.1 other upstream 2391132 1713813 ~ 1729395 (+) False bpifcl
TU100018 other downstream 15607 4141054 ~ 4222171 (+) True G67630
TU100016 other downstream 91603 4217050 ~ 4220395 (+) False G67630
TU100101 other downstream 285429 4410876 ~ 4413142 (+) False hoxd4a
TU100144 other downstream 431696 4557143 ~ 4562602 (+) True G67717
XR_006251862.1 other downstream 583606 4709053 ~ 4717233 (+) True rbm45

Expression Profile