RNA id: XM_043249308.1


Basic Information

Item Value
RNA id XM_043249308.1
length 1051
RNA type mRNA
GC content 0.47
exon number 5
gene id tex30
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 11379870 ~ 11381952 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCTTCACGTGACCTGTCCACGTGGGAGAAACCCGGGCGTTTGAGTTCTTCCACCAAGCAACCATCAGTTCATAAATGGAATTTTCTGAGGAGAACGTGAGCATCCCGTTCGAGCAGAAGGAGCTGGACGGTGTGGTGACGGTGCCAGCGGACGTCCGCGCGCGACGCTGCACAGCTGTGGTGTTGACGCACGGCGCGGGGGGGGACATGCGCGCCAAACAGCTGGAGAGCGTCGCGCGCGCCCTCGCCCGTTCAGGCGCTCTGTGTCTGAGGTTCACCTGCAGGGCGCTGAACTTTACCTACAGGATCAGAGCTTACAGCGCCGTCGTAGAGTATTTAAAGACCCATGAGAGATATGCACCAGACAGTCTTTTCTTGGGAGGACGCTCTATGGGTGCTCGTACCGCTGTCGCTGTGTGTAAACGTATGTGTGACGTACAGAAGGATGCAGTCCAAGGGGTTTTGTGTTTGTCCTTCCCGCTGAACGTACCAGGAAAACCACAATCATTTGCTGAGCGGAGTCGTGACCTCCATGCACTGTCCCAGACCTCTGTGCTCTTTGTTTCTGGCACTGCAGACAACATGTGTCAACAGAATCTCCTACAAATTAGTATGCATGCCATGAAAAGCCCTTCTGCTGTTCACTGGGTCAAGGATGCAGACCATGGACTCAAAGTACGCGGCAGAACAGAAGAATCAGTAATGGAAGAAGTCAATTCAAAGATTATTGCATGGGTAGAACACCAAAAGTGACATGCATTtctagaaataaataaaggtggTTATTACTGTCTGGATGAAAGAAGAGGGTGAGCTCTGTACATAGTTACCGTATGTTAACTGTGTTACAGATTATGTAAGAACAATACAGATCATAATTATAGTCagcattattatcattaaaattgtgtttgaaCTGAGTACTATTTGGGATATTTTTACTAAACTATAAAAATCATATGTGTTGTTATTCTTATTGAGAGGACATTTGCttgcaaactgtattttcttgtaagctacagctataaaaaataaacactccTGGTAAAtaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU102718 lncRNA upstream 134392 11245151 ~ 11245478 (+) True G69459
TU102659 lncRNA upstream 178705 11200651 ~ 11201165 (+) True G69417
TU102625 lncRNA upstream 289436 11063601 ~ 11090434 (+) True G69403
TU102581 lncRNA upstream 349468 11029380 ~ 11030402 (+) False creb1b
TU102562 lncRNA upstream 438346 10941308 ~ 10941524 (+) True G69358
TU102766 lncRNA downstream 38253 11420205 ~ 11423317 (+) True G69483
TU102767 lncRNA downstream 38253 11420205 ~ 11423317 (+) False G69483
TU102823 lncRNA downstream 597829 11979781 ~ 12009922 (+) False G69518
TU102821 lncRNA downstream 623749 12005701 ~ 12009922 (+) False G69518
TU102824 lncRNA downstream 623749 12005701 ~ 12009922 (+) True G69518
XM_043248189.1 mRNA upstream 448 11372926 ~ 11379422 (+) True poglut2
XM_043248862.1 mRNA upstream 7299 11263726 ~ 11372571 (+) True stxbp5l
XM_043249679.1 mRNA upstream 135440 11232007 ~ 11244430 (+) True gtf2e1
XM_043249678.1 mRNA upstream 135440 11232049 ~ 11244430 (+) False gtf2e1
XM_043248564.1 mRNA upstream 154037 11224548 ~ 11225833 (+) True crygs2
XM_043249225.1 mRNA downstream 440 11382392 ~ 11385994 (+) True nepro
XM_043249494.1 mRNA downstream 83652 11465604 ~ 11490149 (+) True LOC122352020
XM_043249531.1 mRNA downstream 664522 12046474 ~ 12086508 (+) True arhgap15
XM_043248390.1 mRNA downstream 740279 12122231 ~ 12155973 (+) True LOC122351360
XM_043248569.1 mRNA downstream 1010334 12392286 ~ 12429356 (+) True acvr2aa
XR_006251850.1 other upstream 984640 10328731 ~ 10395230 (+) False il1rapl1a
XR_006251853.1 other upstream 1823223 9443125 ~ 9556647 (+) False thsd7ba
XR_006251841.1 other upstream 2230204 9142592 ~ 9149666 (+) False si:ch1073-416j23.1
XR_006251842.1 other upstream 2230209 9142592 ~ 9149661 (+) False si:ch1073-416j23.1
TU101764 other upstream 2513973 8864649 ~ 8865897 (+) False cryba2b
TU102754 other downstream 101485 11483437 ~ 11489996 (+) False LOC122352020
TU102836 other downstream 664547 12046499 ~ 12155804 (+) True G69527
TU103038 other downstream 1245583 12627535 ~ 12629535 (+) True G69670
XR_006251865.1 other downstream 1348884 12730836 ~ 12730962 (+) True LOC122352187
TU103102 other downstream 1350681 12732633 ~ 12741060 (+) False LOC122351618

Expression Profile