RNA id: XM_043249309.1


Basic Information

Item Value
RNA id XM_043249309.1
length 2090
RNA type mRNA
GC content 0.49
exon number 14
gene id lcmt2
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 11225956 ~ 11231688 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGCTTCCTTGTTGTTTCCACAGGCTGCTTCCACGTGTGTTCAGAGTGATGCCAGTAAACAGCAAGAGAGACCAAGGAAAAGATGCAGCTGTGCAGGGGACTAATGACAGCAGTGTGGTCAGTAAGGTATCAGCAGCTGCACAGGGCTACTTCCACGATGATTTCCTTAAGCATTTTGTGTGCAAGGTGTCAAGAAGAGCTCCACTGATTAATAGaGGTTATTATGTGCGCTGGAAAGCAGTCGATCACTGTGTGAAACAATTCTTCCATGCCACTCAAGCCTGCTCGAGAAGACAGATTCTTTCACTTGGAGCCGGGTTTGACTCCCTGTATTTCCGGTTGCGTGCGGAAGGAGCCCTTGGAGGTGTCACAGTTTTCGAGGTTGACTTTCCAGAAGTTGCCCGACGCAAGACTGCCTTGATCAATAGCAATACTTCTCTGAAGGACACGTTGCCGGATAGAGAGACAGTCTCAAATCAGCAGACTAATGCTGTGTTCATCAGAAGTGGTCATTATAATCTCATTGGTGTGGATGTCAGGAACGAGCAGGAAGTGGAGGCGACTCTGAGCGGAGCTGGACTGCAGTGGGACGCTCCCACACTCGTCTTGTCAGAGGTTGTGCTGACTTATATGGAAACACAATGgtcagatgctgtgattggctgggCTGCCAAGTTGCTCCCACAATCTATGTTTGTGATGTATGAACAAATCCACCCAGATGACCCGTTTGGCAGGGTCATGCAGAACCACTTCCTGAAGCTCAATTCTACCATACACGCTCTGAAACAATATCCAGACACTGTCGCTCAAAAGCAGAGATTCATACAGAAGGGCTGGGAAAAATGTGTCTGTCTGGATATGAACCAGTTCTACTTTGACCTTCTTCTtgaagaagagagacagagagttgAGGGACTAGAGCCTTTTGATGAGTTTGAGGAATGGAACCAGAAATGTTCCCATTACTTTATCCTTACAGCCTCCAAAGGCACTGTGACCAGTCAAGCACTTCTCAAGTTAACGAAGGCGTCCTCCGTTCCTCACATGGCTTCTCACTGGGCCGAGTGTCCTCCCCTGGTCATTCAGCCCATGTGTGGGTCTCCGAGTATAGAGGCTGTCGGTATGGCCTCTGCTCTCCTGGCACCTGGAATCATCTTACTCACCGGAGGCTGTGGGAGAAGCGGAAGAGACACAGCAGCGAGGGTCCTGATCAAAGAGAAGGATGGCTGGAAATGTGCCTGTGTGGAGGCTCTTGGAGATAGAGTGATTAGTCTTTATCAGACGTTGACATCTATCCCTGGAGGTGGAGCTGTGCTCTTCGGTGGAAGAACTTCTCCACTCAATCCAACAGGCAGTGTTGTGTGGGTGACATTTGACCCCGGTAACGATCGATCCCAAGGTGCTGTACAGCTGTCTTTTAAGAACATGGTTTGTACCGGCGCTGGTCCAAAGCCACGCTGGCGACATACATCAACCTTGATAAGTTATAAAGATAAGACCTTTCTGTTAGTGTTTGGGGGACGTACAGAGAAGGATCCAGTTCTAGATGATGCACATTTTCTGAGTTTGGAGGACAAGCGCTGGACTGAGATGACAGTTGTTGGTGCCGTCCCGGAAGCCCGTCATTCCCATTCGGCTTGTCCCTTCGGTGGGGGCCTTGTGATATTTGGAGGCTTGGGGAAAGGTGGTAGACCTCTCGGTGATGCTTCCTATCTGAGACCTACATCATCAGGTTTTTGTTGGGAGACAAAGAATTTGCATCCACCCCCAGTACCCAGATATTCTCATTCAGCCTGTGTAATTAATGAGAAGTTGGTTGTGGTTGGTGGAGTTTGGCTTCAGGCTGATGGAGTACCAGGAGTTGCTGTAATAAATCTAAACACTGGGAGCTGTGTGGAGATCCAGCTGGATACTtcatcTGTGCCTTGGCCTCTGATGCTGCATTCATTCTGCTTGGAGGTGCTGGACTCTGAGGGGTCTGAGATGGTGCTCATTGGTGGAGGAGGAAATTGTTTCTCATTTGGAACTCACCTCAATCTCCACCCCATAACTCTGGATCTACGACCAATACTTTGCAATTCGCGTTAG

Function

GO:

id name namespace
GO:0032259 methylation biological_process
GO:0008168 methyltransferase activity molecular_function

KEGG:

id description
K15451 PPM2, LCMT2, TYW4; tRNA wybutosine-synthesizing protein 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU102615 lncRNA downstream 195463 11029377 ~ 11030493 (-) True G69396
TU102576 lncRNA downstream 271971 10947044 ~ 10953985 (-) True G69362
XR_006251756.1 lncRNA downstream 279212 10930480 ~ 10946744 (-) False LOC122351427
TU102742 lncRNA upstream 127262 11358950 ~ 11365819 (-) True G69467
TU102798 lncRNA upstream 164988 11396676 ~ 11493120 (-) False LOC122351858
XR_006251827.1 lncRNA upstream 559093 11790781 ~ 11954234 (-) True LOC122351998
TU102924 lncRNA upstream 854026 12085714 ~ 12156439 (-) False G69596
TU102926 lncRNA upstream 854026 12085714 ~ 12156439 (-) True G69596
XM_043248821.1 mRNA downstream 9302 11210200 ~ 11216654 (-) True rab5b
XM_043249581.1 mRNA downstream 20988 11193693 ~ 11204968 (-) True armc8
XM_043249582.1 mRNA downstream 21014 11193693 ~ 11204942 (-) False armc8
XM_043249406.1 mRNA downstream 129275 11089670 ~ 11096681 (-) True idh1
XM_043249268.1 mRNA downstream 140046 11051094 ~ 11085910 (-) True plekhm3
XM_043249223.1 mRNA upstream 154689 11386377 ~ 11389378 (-) True tlr20.4
XM_043249222.1 mRNA upstream 160552 11392240 ~ 11396663 (-) True LOC122351856
XM_043249224.1 mRNA upstream 164978 11396666 ~ 11399215 (-) True LOC122351858
XM_043248236.1 mRNA upstream 168863 11400551 ~ 11404296 (-) True gtpbp8
XM_043249495.1 mRNA upstream 222381 11454069 ~ 11464414 (-) True LOC122352021
XR_006251823.1 other downstream 539329 10680158 ~ 10686627 (-) False mrasa
XR_006251803.1 other downstream 706499 10515272 ~ 10519457 (-) False fdx1
XR_006251819.1 other downstream 784084 10433507 ~ 10441872 (-) False trim13
TU102802 other upstream 265322 11497010 ~ 11499372 (-) False LOC122351308
XR_006251743.1 other upstream 935303 12166991 ~ 12189656 (-) True gtdc1
TU102995 other upstream 1190741 12422429 ~ 12423446 (-) True G69650
TU103144 other upstream 1476943 12708631 ~ 12711824 (-) False LOC122351186
XR_006251867.1 other upstream 1506356 12738044 ~ 12738171 (-) True LOC122352189

Expression Profile