RNA id: XM_043249310.1


Basic Information

Item Value
RNA id XM_043249310.1
length 3021
RNA type mRNA
GC content 0.46
exon number 7
gene id tbccd1
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 11217132 ~ 11222171 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACGTCACGTTGTGACGCAGACATGGCAACCGCTCATGAACTGTTGTGCGGTTTTATCGTTGTTTGTTTTCTAAGAGCTAATACTTCTTTAGAGATCGTACATGTTTATTAACTTTaactactttattattttaaggtgGTGGTTTGGTGGTTACGTGGGTCTCTAATAATGAAGGAGTTAATGAAAGGATGAAAATAATGAAGTTTTGAGCGGCACGGCAGTGCTCGTTCGCGAAGCGCCTCCTTTTGGTATCTGGTCGCTCGCGCGCGCGCATCAGTGCAACAGCATCGGAAAgcatttcagtttaaatatatacgttGTATATGTTTGTTATGTATTAATCCACGAAGCAATGGTGACCACCTTTTGAAACTCCAAAACTTCCAATGATTAGAAATGGACAAATACACAGCTTGTGTATGGCCACGTCTGGAACCCTTTCTAATGGGGGTGCTTCCTGCCACACCTCCAAGCAAATTCAGCATGCATTATCTGCGCAAGATGGCTTGTTACGTCCGGTCCCGGGACGGCTGCTTCCCCAGGCTCGGCTGGCACATGTGGCGACACATTGCTTGTGGCAAACTGCAGCTGGCGGAGGAGCTTGCCTGGTTGTATTTCGAAACTTTTGACCTGTTGATGCCTCGTTCTGCAGAGCAGAGATTAGAGTGGGCAGAAGCTCTGTCGCAAAGCCATACTCCTAAGGAACTGGACAGGCAGCGTTGTAAGCTGTCAGTGGACACTCTGCAGTTTCTGCTCTTCCTGTATCTACAGCAACTAAACCGAATCTCTCTCCGCACGTCACTGATTGGGGAAGAGTGGCCGAGTCCCAGATCACGAtctccctcttcctcctctgaGAGAGACGCCAAAATAAGCTCACAAAATAAGAACTGGGATGACCAGGCTCATCTTACGTTCATCCAGACACACCTGTCTGAGCTTTTGGAGTTACTAGTAGAGCCAGGCCAGCTGAGCACTTCTGGACAGGTTCTGCGTGACAGCCAGCTCACTTCAGAGGCCCTGGAAAGCCTCAGTTTGTTGTTGGAAGGATCTGTGAGCCATAGCCGTACCGTGCACCCAATCCACAAGCTCCTCAGCCGCTCAACACTGCAGTCCCAGGCAGGATACTCCAAACTCAGCCGCTCCTACTCTCTGCAGCAGTTCCAGGGGTTTCTGCATCAAGCCCTTTGTCTCAATCCCTTCGGCATTTCCACCTGTTTAGAGTCGGGAAAGAAACTGACATGGGCACAGCAAGtaGAGGGCACCctaaaaaaagccaaaatattcagaaatacaCACATGGCTCCTCCAGGAAGTCGATTGTTGCTCATGTCACAGGTCTGCAAACAGACGCTGGCCAAAGATTCTGAAAAGCTGAATAATTCCAACATCAAACTCCACCGCTGCAGTGAGGCTTTCATCTACCTTCTCTCTCCTTTGAGGTCTGTGACCTTGGATAAGTGCAGAAACAGTACAGTGGTATTCGGCCCGGTGGGAACCAGCGTCCACATTCAGAGCTGTGAGAATGTTCGTGTGGTGTGTGTGGCCGGCCGGCTGACGATAGGCGGCTCTTCTCATTGTACAATCCATGCCCTCACCCCTACTCGACCCCTTCTCCTTCCTGGGAATGTGTCTCTCACACTGGGCCCCTTCCACACACATTATCCCACTCTAGAGGATCACATGGCTAGTGTGGGCCTAGCTGTGGTTCCAAATTTATGGGACCAGCCTCTGCTGTTTGGAGCCGAGGGTTCTGCTACAGACACTGGCTTCTACCGCATCCAGCCCCCCTCTGAGTTTTACCCGCTGGTGATACCCTTTCAAATGGAGGGGGATAACTGCGAAATCCCTTGGGGCCTGCCAGCAGATTACCAGAAGGCCTTGGAGAGCCGAGAGAAGATGATAGAGGAATGGCAGAAGACTGTGAAGGAAGCACACCTAAACAAggTCCAGAGGCGGCAGTTTCAGGCCGTAGTGGAGCAGAAGTTTCATGAGTGGTTGCTTGCGACAGGACAAAGACAAGAGCTGGACAGCCTCCTCCCTCCTGTCCTCACCCCCTCCACATCTGTGGACCACCGGCCTTCCAGCCACAACTCCAACCCTGGACCAACGGTACTCAAAGAACAAGCACCCGAACAAGCAATGGGACGAGCACCAACCGTTTGCTAAGGGAACAGCGAAACAACCAAAAGCTGATTTTTGCCGTCTCTGATCCTCAAACATTAGTGTTCTTTTTGTATGAAGACTGTCAATGCTGTATCTAGTTTTGATAGGGACTTTGTCCTGTCACATTATTGACATCTAGAAAAATCTATGCTGGATTAGTGATTAGAGTTGCTATAttattactgcagttttcagATTATGCATTATGCTAATTTTTGTTACGAAACACCAGTGATTCCAGAgaagcattatttaaataaaacagaaaagggACAGATTGCTGCCTTTATTGGAATTTAGAGGATACAGGGATGAGATATGTACTGTAATTATTGACACATGTCGATCTCAATTGGTACGTGGCATAACACATACACTCACTGAAGAGTTGAATGCCTTCACATGGCCAGtatgaaatgttaatatttctcCTTTGCTGTATGTTCACAATGCCTTGCACTGTAATTGCACTATTACTGTATCTTCACCATACAGATTCCAACAACGCTGTCACTTAAAATGTCTCTCGACTGTATTAATGTCTTAagttaacatttgaaatatgtttgaATCAGCATTTTATAGTTTAGTGTACATATTCTATAGACATCTGTGTAACACAAATCAACTTTGGTTTCTTAAAGGTGAAATGGTTTGGTTGTTTAATAAACCATAGCTATTATCATATTCTCTTTTGAAGACAATTTTTAGCTATTTGGACTTCAGACTCCTTGTATCTTACCTTTGAGCTTTAATGGCCGTATTGAATCAGTAGCACTTACCTTTAGCTTGCTGAATGACTATATGTGTGTAATGCATCTTTAAATCATCAAGCAGCAATTCTTTTTCATCTTA

Function

GO:

id name namespace
GO:0000902 cell morphogenesis biological_process
GO:0005815 microtubule organizing center cellular_component
GO:0000922 spindle pole cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K16810 TBCCD1; TBCC domain-containing protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU102659 lncRNA upstream 15967 11200651 ~ 11201165 (+) True G69417
TU102625 lncRNA upstream 126698 11063601 ~ 11090434 (+) True G69403
TU102581 lncRNA upstream 186730 11029380 ~ 11030402 (+) False creb1b
TU102562 lncRNA upstream 275608 10941308 ~ 10941524 (+) True G69358
TU102559 lncRNA upstream 293655 10923149 ~ 10923477 (+) True G69355
TU102718 lncRNA downstream 22980 11245151 ~ 11245478 (+) True G69459
TU102766 lncRNA downstream 198034 11420205 ~ 11423317 (+) True G69483
TU102767 lncRNA downstream 198034 11420205 ~ 11423317 (+) False G69483
TU102823 lncRNA downstream 757610 11979781 ~ 12009922 (+) False G69518
TU102821 lncRNA downstream 783530 12005701 ~ 12009922 (+) False G69518
XM_043248820.1 mRNA upstream 7551 11205837 ~ 11209581 (+) True dbr1
XM_043249569.1 mRNA upstream 24205 11099044 ~ 11192927 (+) True kcnh3
XM_043248826.1 mRNA upstream 176174 11031448 ~ 11040958 (+) True ccnyl1
XM_043249647.1 mRNA upstream 186723 11021736 ~ 11030409 (+) True creb1b
XM_043249648.1 mRNA upstream 186723 11021923 ~ 11030409 (+) False creb1b
XM_043248564.1 mRNA downstream 2377 11224548 ~ 11225833 (+) True crygs2
XM_043249679.1 mRNA downstream 9836 11232007 ~ 11244430 (+) True gtf2e1
XM_043249678.1 mRNA downstream 9878 11232049 ~ 11244430 (+) False gtf2e1
XM_043248862.1 mRNA downstream 41555 11263726 ~ 11372571 (+) True stxbp5l
XM_043248189.1 mRNA downstream 150755 11372926 ~ 11379422 (+) True poglut2
XR_006251850.1 other upstream 821902 10328731 ~ 10395230 (+) False il1rapl1a
XR_006251853.1 other upstream 1660485 9443125 ~ 9556647 (+) False thsd7ba
XR_006251841.1 other upstream 2067466 9142592 ~ 9149666 (+) False si:ch1073-416j23.1
XR_006251842.1 other upstream 2067471 9142592 ~ 9149661 (+) False si:ch1073-416j23.1
TU101764 other upstream 2351235 8864649 ~ 8865897 (+) False cryba2b
TU102754 other downstream 261266 11483437 ~ 11489996 (+) False LOC122352020
TU102836 other downstream 824328 12046499 ~ 12155804 (+) True G69527
TU103038 other downstream 1405364 12627535 ~ 12629535 (+) True G69670
XR_006251865.1 other downstream 1508665 12730836 ~ 12730962 (+) True LOC122352187
TU103102 other downstream 1510462 12732633 ~ 12741060 (+) False LOC122351618

Expression Profile