RNA id: XM_043249324.1


Basic Information

Item Value
RNA id XM_043249324.1
length 4150
RNA type mRNA
GC content 0.52
exon number 25
gene id LOC122351910
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 5766330 ~ 5796149 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GAAGCGGCTCCGCAGCATCGCCGTCGCGCCCGGCGCACTCGCGGACGAACGCGCACTTGCACGCGGCGGATTTATAACCGGGGCTGAGCCGGGAAGACCATGGCGGAACGGGGCCAAGCGTCTCTGGCGGGACAGAGGTTAGGGGCTCCGGAGACTCTGGGGATCAGCACCCTGGAGCCCGGGCACAAACCGCCCGCCATGCCGTCTGGACGCCCGGTGCCCGTCAGAGTCGTGCTGCTGGATGACTCCGAGGAGATTTTTGAAATATCGCATCGAGCATCGGGCCGGGTTCTGTTCGAGATGGTCTGCTTGCATCTGAACCTCATTGAGGGGGATTACTTTGGCCTAGAGTTCCAGAGCCATCACAGAAAGATGGTTTGGTTGGATTTACTAAAGCCCATTAGAAAGCAGATCACACggcCCAAGCACACCGTCCTTCGGTTTGTTGTGAAGTTCTTCCCCCCTGATCACTCGCTGCTGCTGGAGGAGCTGACCAGGTACTTGTTTGCGCTGCAGGTGAGGCAGGATCTGGCGAGCGGACGTCTCACGTGCAGCGACGCCAGCGCTGCTCTTCTGGTCTCTCATATCATCCAGTctgaGATTGGGGATTTTGAGGAAACTCAGTGTAGACAGCATCTACTAAACACCAACTACATCCCTGACCAGATGGCCCTGATGGACAAAATCATGGAGTTCCACCATAAACACATtggACAGACACCAGCAGAGTCAGATTACCGGTTGCTGGAGGTGGCTTGCAGGTTGGAGATATACGGTATCCGACTTCATCCGGCTAAAGACAGAGAAGGAACCAAACTCAGCCTGGCTGTAGCACACGGCGGCGTCCTCGTGTTTCAGGGACACAACAGAATCAACAACTTCAACTGGTCTAAAATCCGCAAGCTGAGTTTCAAGAGGAGGAGGTTCCTTATCAAGCTGAGAGCAGACCCTAGTCAGAATGTCAATCAGGATACTCTGGAGTTTCTGATGGCGAGTCGGGACTGCTGTAAAATGTTCTGGAAGATCTGTGTGGAGTATCACGCCTTCTTCAGGCTCTTTGAGGAGCCCAGACCCAAACCCAAACCGGTGCTGTTCAGCAGGGGCTCTTCCTTCAGGTTCAGCGGTCGGACACAGAAGCAGGTGATAGATTATGTGAAGGAAAACGAGTTTAAAAAGCTGCCCTTTGATAGGAAACACAGTCGAGTGCAGTACAACAGCAGTCTTTCACCTCTGCGTTCTGTGCCAAATCAAGCTATCAAGCAGAGCTGGGAGGGCTCATTTTTAGTAAGCTCAGAAGATTCTGCGGTAATAAGACCATGTGGAAACTCCTCCCCATCGACTCAGCGCAATGGATGCAGTGACCAAACGTACCCCATTCAGGAGGACCGCAGAAGCCCGGCCGCTAAGCAGCAGCCCGTCGATCGAGCAGAGGTGACGTGTGCTTTAGTTAACGGTCACGCTGATGACTGTAGAGGAGCGACGCCGTCTCCTCTCATCTCGCCCATGCTGAATGACACTGGCACCATACGCACCGACGATGAGGAGGACAACAGGAGGAAGaacTGTCCCGCTGATACCGCTTACTGCATAGCTAAAGAGCTGCTGTGTACTGAGAGGACATACCTGAAGGACCTGGAGCTGATCACAGTGtggtTTCAGGGGGTGCTGGACAAAGAGGATTGTGTTCCTGACGCTCTGAAGACACTGTTGAGTTCCACGTACGAGCCGCTTCATTCCCACCACACACACTTCCTCcaggagctggaggagagaCTGTCACTGTGGGAAGGCCGATGCAGTACGGAGGTTAAAGAAGAAATGCAGCATGTAGGAGACCTGCTGCTGAAGAGCGCACAGGAGCTGAAGGCTCTCTCAGCTCAGCTGCAGACGATCTCAGAGTGCGTGTTTGCGCTGGAGAGAGCGTGCGTCGCGTCCCGCAGGCTGGAGAGCGCGTGCCGTGAGTTTGAGCTGCAGAAGGTGTGTTACATTCCTCTGAACGTCTTTCTGCTGAGTCCCCTCCACCGCCTGCTGCACTACAGACAGATGCTGGGCAGGCTCTGCAAACACTACCCGCCGACACACTCCGACTACGGCGACTGCTCAGCTGCTTTGGGCGAGGTGAGTGAGCTGGAGGCTGCTCTTCGTCCTGGTCTGGAGGAGATGGAGAACTATCAGAAGCTCCTGGAGCTCCAGAAGGATGTGGTCGGTGTGGAGCGTCTGGCCGTGTCTGGACGTCAGCTCATCAGGCTCGGCTGTCTCAGCAAACTCTCTGGGAAAGGCCTTCAACAGCGCATGTTCTTCCTGTTCAGTGACGTGGTGTTGTACAGCACCCGAGGGATAACGTCGACCAATCAGTTCACAGTGCACAGGCAACTTCCTCTGCGCGGCATGACAatccGAGAGAGTGAGGACGAGTGGGGCGTCCCGCACTCCTTCACACTGATGGTGCAGCAGCAGTCACTGGTGGTCGCCGCATGTTCAGAGTCAGAAATGGAGAAATGGATGGAGGATTTAAAGATGGCGGTGGACATGGCCGAAGAGTCTAACggactgacctctgacctgctGGCTGCTAGCAAGGATGTCAAATCCTCAGGGGCGTCCGAAGTGGAGTCAGAGGATGATCTTTGTGGATCTCGAACGTCTTTGCCTCGAAACGGCAACAGTTCGGGAAACACTCCGAACCGCGGCAACACGACGGCCCACGTGTGCTGGCACCGCAACACCAGTGTTTCCATGCTGGACTTCAACACGGCCATCGAGAACCAGCTCTCAGGAAATCTGCTCCGGAAGTTTAAAAACAGCAACGGCTGGCAGAAACTCTGGGTGGTCTTCACCAACTTCACCCTGTTCTTCTACAAAACACACGAggtaaacaacacacacacacacacacactgtcacgtcctctgtgaatgtgtgtgtgaaacgtCTGTCTCTTCTCGGTCAGGACAAGTATCCTCTGGCCAGTCTGCCTCTGTTGGGTTACTCAGTGACTCATGCAGGAGAATCTGAAAACATCCACAAAGAGCACGTCTTCAAACTGCACTTCAAATCTCATATCTACTACTTCAGAACGGAGAGTGAATACTTTTTCGACAGATGGATGGCGGTGATCAGAAGTGCCACGGTCTCTGCCAGCAGAACCCGTTATCTGAACCGGACAGAACCGGACTGAACCCCGGAGAACCCGGCATCTGAACCGGACAGACAAAAACACGAACCAACAGACCCACGCAGGCATATAGGGAGCAACcatctccgtgtgtgtgtgtgtgtgtgcttttatgaCAACGTCACTTTTTTTGTGAccgacttttttttaatagcattgTTTCATAGTACGACATTAAAAGGGAATGTCGCCGTTTCGCTTCTGAgccttttaatagttttaatgatCAGCCACGgacgttttttttctcccttatCTGTATTCTCACCGATTTTCTTGCATGTAAGGCGCTGAGATTTAATGAGTGAAGCGGTGAATGCCAAAAGGTCAAGTACAGAGGTCACCGCCGAGATAAAAGGTGCTGACGAAAATCCTTATCGAGATATTCACAAAAGAACTGCATTACGTTTCATAAAACGGCCTCGGACGTGCTTCACAGCATTATCTTGAGAAAACAAAGGCTCAGAGATGAAGACCGTGGAATTCCCTTTAAACTCACGCCATtccccacaaacacacaggtgCTTTTTAAAGCTCGCGTTTTTGTCCTCTGGTGTAaccaacgaaaaaaaaaaaacatttcctgcatttttttaactggGCTTTTACAGAACCtctttttgtaaatgataaGCAAGTGTAAAGCCGTCACTTGTTGCCTTTGAAAGGAGGCGGATCCATTTCAGTGCCATGGTTTTTATAGTACGGGTTTCTATGTTTTAGACTTTGTTTCTATCAGCTGACGCCACGCTGGGTTCCAGAAGCCAATGTGCCAAAACCACGACGGTGACTTCTGTCCGTTTCCATTCTGGACTGACTATATCGTGGGAGCATCGAGAATTAGGGATTTATCACGTGCCATAACGCGCAAAAGGTCACTTAGGTAACGTTtgatgaggttttttttttgttatttaaggTCGCTGTCGTTTTAGGGGTATCGTCTTCACCCAGCTAAGAAACCGTAAAGCGGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100657 lncRNA downstream 30547 5735337 ~ 5735783 (-) True G68055
TU100655 lncRNA downstream 31158 5734924 ~ 5735172 (-) True G68053
TU100650 lncRNA downstream 50693 5715341 ~ 5715637 (-) True G68048
TU100602 lncRNA downstream 368191 5397479 ~ 5398139 (-) False LOC122351915
TU100600 lncRNA downstream 368934 5396865 ~ 5397396 (-) False LOC122351915
TU100695 lncRNA upstream 9791 5805940 ~ 5806327 (-) True G68082
TU100773 lncRNA upstream 248966 6045115 ~ 6047596 (-) True G68120
XR_006251731.1 lncRNA upstream 321702 6117851 ~ 6142682 (-) True LOC122351301
TU100892 lncRNA upstream 445173 6241322 ~ 6241602 (-) True G68189
TU100973 lncRNA upstream 883946 6680095 ~ 6683011 (-) True G68265
XM_043249315.1 mRNA downstream 245044 5463314 ~ 5521286 (-) True myo1b
XM_043249316.1 mRNA downstream 245045 5463314 ~ 5521285 (-) False myo1b
XM_043249317.1 mRNA downstream 245045 5463314 ~ 5521285 (-) False myo1b
XM_043249318.1 mRNA downstream 245046 5463314 ~ 5521284 (-) False myo1b
XM_043249319.1 mRNA downstream 245047 5463314 ~ 5521283 (-) False myo1b
XM_043248538.1 mRNA upstream 77444 5873593 ~ 5874656 (-) True LOC122351461
XM_043248540.1 mRNA upstream 78520 5874669 ~ 5875367 (-) True LOC122351462
XM_043249341.1 mRNA upstream 79325 5875474 ~ 5876391 (-) True LOC122351923
XM_043249311.1 mRNA upstream 92744 5888893 ~ 5899643 (-) True LOC122351906
XM_043249312.1 mRNA upstream 92744 5888893 ~ 5899641 (-) False LOC122351906
XR_006251815.1 other downstream 396741 5349955 ~ 5369589 (-) False LOC122351925
TU100497 other downstream 657943 5105894 ~ 5108387 (-) True G67930
TU100475 other downstream 736855 5028926 ~ 5029475 (-) True G67912
TU100470 other downstream 751517 5010513 ~ 5014813 (-) True dbi
TU100469 other downstream 751595 5010513 ~ 5014735 (-) False dbi
TU100767 other upstream 123608 5919757 ~ 5922820 (-) False LOC122351463
TU100782 other upstream 247126 6043275 ~ 6043925 (-) True G68124
TU100850 other upstream 303198 6099347 ~ 6099883 (-) False LOC122351979
TU100887 other upstream 450751 6246900 ~ 6261069 (-) True G68188
TU101110 other upstream 1274836 7070985 ~ 7148620 (-) False LOC122351350

Expression Profile