RNA id: XM_043249327.1


Basic Information

Item Value
RNA id XM_043249327.1
length 2379
RNA type mRNA
GC content 0.50
exon number 29
gene id LOC122351913
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 5323729 ~ 5341221 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

aaaccatcaCCCTGGTTGTGTCCAGGTCAGTGTGTGGTGGAGTAACTGATGGAGACCAACGTGGACGATATTGACCTGAAGGCCTCTGTATTCAGCCAAGCAAACCCTCTTTATGACAACACCATGAAGCTGACTGACCATGATGACTTCCAGCACAGCAAACTAAATTCAAAAAAGCCAGCGACAAACCTTTGCTGCATTTCTGTTCTCGTACTGTTTTTGCTGCTGCTGACTGGACTGGTTTCTTTGTTGGCATATAAAGTCATTACTCTGGAGGCTTTGGTTCATCTTCACTATACATCAGCTGATGCCAAAATAGCGGCACTCATGTCTGCTGAAGGAATCAACCTGGGCAGCTCCAATTCAgatcagTGTCTCTCCGATATGTGTGGGAACAATGGGACTCTAGAGAATCTAAGGACTCAGCTAAACCAGCTCAACATTAGTGCACAAAGAGCCATAGTTTGTCCGCCTGGTCCACCTGGCAAACCTGGATTAAACGGTCCTCCTGGAGTGCCAGGGATGGCGGGACAGAAAGGACAGGCTGGCTCACcagGTCAGGTAGGTAAGCCTGGAGCTCCAGGTGATAAAGGACAGAAAGGAGACCAAGGACTAGCAGGTGAAAGGGGCCCGACTGGCATGATGGGTGCACCTGGCATTCCTGGCTTGAAGGGGGATACAGGACAGAGAGGATTAACAGGTTTACCTGGGACTGATGGTCGTCAAGGTGCAGTGGGAAAGACTGGTATCCAAGGAATACCAGGTCTCCATGGGCCACCAGGTCCTAAAGGAGACCCAGGTGCCAGAGGTGAGAGAGGTGAACGGGGGCCTTCAGGTCCTAGTGGTCTTTCTGGTCTGCAAGGACCACCTGGTGAAAAAGGTTCACCTGGACCAAAGGGAGACACTAGTGTTGGCCTTCCAGgGCGCCCAGGACCACAGGGACAAAAGGGAAGTCAAGGACTGACAGGTGTTCCTGGACTTCGGGGTACAAATGGAGAAAAGGGCAGTAAAGGTGATCAAGGCCTGAGGGGAACTCAAGGTCTTAAGGGAGAGAAGGGTGATGTAGGACCCCTGAGTAGCGCCCCTGGTCCTAAAGGAGACCCAGGTGCCAGAGGTGAGAGAGGTGAACGGGGGCCTTCAGGTCCTAGTGGACCTCCTGGTCTACAAGGACCACCTGGAGTAAAAGGTTCACCTGGACCAAAGGGAAACACTGGTGTTGGCCTTCCAGGGCCACCAGGTCAACGGGGAGAAAAGGGAAGTCAAGGATTGTCAGGTGTTCCTGGACTTCGAGGTCCAAATGGAGAAAAGGGCAGTAGAGGTGATCAAgGCCTGATGGGAACTCAAGGTCTTAAGGGAGAGAAAGGTGGTGTAGGACCCCCGAGTAGCACCCCtgGTCCTAAAGGAGACCCAGGTGCCAAAGGTCAGAGAGGAGAGCAGGGGCCTTCAGGTCCTAGTGGACCTCGTGGTCCGATGGGACCTTCTGGTCTCCAAGGACCACCTGGACTAAAAGGTTCACCTGGACCAAAGGGAGACACCGGTGTTGGCCTTCGAGggGTCCCAGGACAACAGGGACAAAAGGGAAGTCAAGGATCTGCagGTGTTCCTGGACTTCGAGGTCCAAATGGAGAAAAGGGCAGTAAAGGTGATCAAGGCCTCAGGGGATCTCAAGGTCTGAAAGGAGCAAAGGGTGATGTAGGACCCCTGAGTAGACCCTCTGctGTGATTCGTTTAGTGGGAGGTTCCAGCCGCGGAAGAGTGGAGGTGCTTCATGAGAATGCCTGGGGAACGGTGTGTGATGACAGCTTTGACACTGTGGACGGTACGGTGGTGTGCAAGATGCTGGGTTTCCAGAGGGCCACTCAGGTGTTCACGGAAGGTGCAGGAACTGGACGTATCTGGCTGGACGAGATGAGATGTACCGGAAATGAGATGAGCATTTTTGACTGTCCACATGGAGGATTCGGAGTTCATAACTGTGGCCACAGTGAAGATGCGGGAGTTAGCTGTgtctgaataaaagaaaaaaacatctcacaCCAAAAATTTTGCTTCTTGACTTTTAGCCAGCTAGTGCTTTTTAGTGCACGTATACCGTCAGTTCTCCTCAAACATATGCAGTTATCAAATTATGAAATTACTGCATAGTAAAACCAAACTTATTGTTGTCAGATGTTCTGCTTGAGAAGTATGCGTGGTGTCATTAAGGCAGCAACATCTATGCATTTCTGAGTTGGATTTATgtgtgccaatatttttggcctatgcactatataaatgtataatcacCACAATAAATTCATCCATGTGTACTGTGCTATCCTAAAACTGTCCTGACATATAACACTCAGacacagcaaaataaatagcttaattttaaaa

Function

GO: NA

KEGG:

id description
K13884 MARCO; macrophage receptor with collagenous structure

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100482 lncRNA downstream 142229 5141790 ~ 5181500 (-) True G67917
TU100495 lncRNA downstream 222952 5099906 ~ 5100777 (-) True G67928
TU100488 lncRNA downstream 234336 5089182 ~ 5089393 (-) True G67923
TU100476 lncRNA downstream 272437 5050429 ~ 5051292 (-) True G67913
TU100474 lncRNA downstream 296132 5027044 ~ 5027597 (-) True G67911
TU100600 lncRNA upstream 55644 5396865 ~ 5397396 (-) False LOC122351915
TU100602 lncRNA upstream 56258 5397479 ~ 5398139 (-) False LOC122351915
TU100650 lncRNA upstream 374120 5715341 ~ 5715637 (-) True G68048
TU100655 lncRNA upstream 393703 5734924 ~ 5735172 (-) True G68053
TU100657 lncRNA upstream 394116 5735337 ~ 5735783 (-) True G68055
XM_043249326.1 mRNA downstream 4142 5297506 ~ 5319587 (-) True LOC122351912
XM_043248556.1 mRNA downstream 183730 5138114 ~ 5139999 (-) False ybey
XM_043248555.1 mRNA downstream 183730 5138114 ~ 5139999 (-) True ybey
XM_043248554.1 mRNA downstream 195631 5122207 ~ 5128098 (-) True insig2
XM_043248546.1 mRNA downstream 301374 5017068 ~ 5022355 (-) True steap3
XM_043249340.1 mRNA upstream 4939 5346160 ~ 5349103 (-) True LOC122351922
XM_043249344.1 mRNA upstream 24866 5366087 ~ 5369589 (-) True LOC122351925
XM_043249346.1 mRNA upstream 24866 5366087 ~ 5369588 (-) False LOC122351925
XM_043249345.1 mRNA upstream 24866 5366087 ~ 5369513 (-) False LOC122351925
XM_043249337.1 mRNA upstream 50132 5391353 ~ 5394547 (-) True bzw1b
TU100497 other downstream 215342 5105894 ~ 5108387 (-) True G67930
TU100475 other downstream 294254 5028926 ~ 5029475 (-) True G67912
TU100470 other downstream 308916 5010513 ~ 5014813 (-) True dbi
TU100469 other downstream 308994 5010513 ~ 5014735 (-) False dbi
TU100414 other downstream 339982 4959717 ~ 4983747 (-) True G67863
XR_006251815.1 other upstream 8734 5349955 ~ 5369589 (-) False LOC122351925
TU100767 other upstream 578536 5919757 ~ 5922820 (-) False LOC122351463
TU100782 other upstream 702054 6043275 ~ 6043925 (-) True G68124
TU100850 other upstream 758126 6099347 ~ 6099883 (-) False LOC122351979
TU100887 other upstream 905679 6246900 ~ 6261069 (-) True G68188

Expression Profile