RNA id: XM_043249340.1


Basic Information

Item Value
RNA id XM_043249340.1
length 1760
RNA type mRNA
GC content 0.37
exon number 6
gene id LOC122351922
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 5346160 ~ 5349103 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TATTTGTTCAAATTTAAGGCAAAAATGCattcttaaaaatcttaatcttaaaaataaataaatactaactaaaataactaatatttgaaaacatgacaatctttataataatgtaatgaattgtcaaataataaattgataTAAATGGAATCTATTCAGAATTTTGAATAGCAGTGAATAATAGgcagtgtacacacacacacacacacactcccagaGAAACACAGGAAACCGATTCACTGTGAGCTCGACAACTTAAAACTAGAGCATCTCACTCAGAAAAGTGTGTGAAAATGCTGGAAAACGTGACATTAACTCTCCTCATCAATTTAATCTTCATGTTCTCCACTGgtcaatCTTCATGTACCTACAGTGCTGTGGGTGAAAAAGTCGTGATTTCATTCGATGGTGCAAAATTACAAGAAGGTGATGAACTGAGATGGACGCATGATGAAGTgagagtttattttaaaaaaggctcAAAGGTTAAGGTCAAAGAGCTCGATGTCGATGAAGATGGATCTCTGATACTGACGGACGTACAGAAGGATAAATCTGGAGAGTACAAGGGCATCATCTATGATTCAGAAGGaagtttaataaaagaaacCGTACAGCAGCTCTGTGTCCTGGAGCCAGTGTCTGAACCTACAGTCGTGGTGGAGTGTGTAGAAAAAGGAGTAAACCTGACTTGTAGCGCAGAGAACAACCGTGAGGTGCTTGTGTCCTGGACAAAAAATGGCATTACGACCGATTCGACTCtcgcatttttacatttcctttcATCTGAGATCAAATCTGGAGATAGTTTCTCATGCACAGTCAGCAACCAGATAAGCCAGAAGTCAGCAAAAGAAGTTCAGCCAGCTTGCTCTGACGCAGGTCTATATGCAACCACTGCCAATTatcacaaagaaaaagaagcaaacagCAGCagtgcaaatgaaaacaaaaaagATGTGTATAAGAAGAAGTTTCTAGGCTTGGATTTGTGGTTGATGCTGGTGATCCTGACAGGGGGAGGAAGTTTCCTCGTCCTCTCCATCATCTGCCTGGTCTGTTTCTGCCGCTGCTACAGACGAAACAAGAGGAAAGCAAAAGAAGAAGAAGAGTACCGGCTTACGTCTCTAATGCCAGATCACACAAATCCACCTGATGTGCAATACATGCAGCAAATCACATCGGAGAGGTCTTCTAAAAGCCAGCGTCCTCTTCCACCCCTGCCCGGCCCCCAAGGTCCTCCTTGTGTTGGACCCCCATAAGAGAACACCCCGACCTTCCAGAGACACTGAGACCAGTATCAAGACCAGCGCTCAACAGAATATCgtttatatatagaatttatcATATACACAAAAGTTagaaaatattaagtaataattttattataaaaataatcaatatattttttttttcagtctcttAGCATATGCATCCGAAAATAATAAGCAGTTTTCGACATTGATTATAATAAGAGCTActattaataattgataatattACCTAATATCACCCATTGATATTAATGAagagtaaatcagtatattgtaatgatttctgaaggatggtgtgacactgaagactggagtaatgatgctgacatGTCAGCTTTCAATCACAGGACTCATTTACGATTGAAATATGTACAAGTggaaaacttatttattttaaattgcaataatacaATATGCccttattactgtatttttgaagagCATAtgagacttatttcaaaaacattaaaaatcttaatcaTTGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100482 lncRNA downstream 164660 5141790 ~ 5181500 (-) True G67917
TU100495 lncRNA downstream 245383 5099906 ~ 5100777 (-) True G67928
TU100488 lncRNA downstream 256767 5089182 ~ 5089393 (-) True G67923
TU100476 lncRNA downstream 294868 5050429 ~ 5051292 (-) True G67913
TU100474 lncRNA downstream 318563 5027044 ~ 5027597 (-) True G67911
TU100600 lncRNA upstream 47762 5396865 ~ 5397396 (-) False LOC122351915
TU100602 lncRNA upstream 48376 5397479 ~ 5398139 (-) False LOC122351915
TU100650 lncRNA upstream 366238 5715341 ~ 5715637 (-) True G68048
TU100655 lncRNA upstream 385821 5734924 ~ 5735172 (-) True G68053
TU100657 lncRNA upstream 386234 5735337 ~ 5735783 (-) True G68055
XM_043249328.1 mRNA downstream 4939 5323729 ~ 5341221 (-) False LOC122351913
XM_043249329.1 mRNA downstream 4939 5323729 ~ 5341221 (-) False LOC122351913
XM_043249330.1 mRNA downstream 4939 5323729 ~ 5341221 (-) False LOC122351913
XM_043249327.1 mRNA downstream 4939 5323729 ~ 5341221 (-) True LOC122351913
XM_043249326.1 mRNA downstream 26573 5297506 ~ 5319587 (-) True LOC122351912
XM_043249344.1 mRNA upstream 16984 5366087 ~ 5369589 (-) True LOC122351925
XM_043249346.1 mRNA upstream 16984 5366087 ~ 5369588 (-) False LOC122351925
XM_043249345.1 mRNA upstream 16984 5366087 ~ 5369513 (-) False LOC122351925
XM_043249337.1 mRNA upstream 42250 5391353 ~ 5394547 (-) True bzw1b
XM_043249331.1 mRNA upstream 47851 5396954 ~ 5399880 (-) True LOC122351915
TU100497 other downstream 237773 5105894 ~ 5108387 (-) True G67930
TU100475 other downstream 316685 5028926 ~ 5029475 (-) True G67912
TU100470 other downstream 331347 5010513 ~ 5014813 (-) True dbi
TU100469 other downstream 331425 5010513 ~ 5014735 (-) False dbi
TU100414 other downstream 362413 4959717 ~ 4983747 (-) True G67863
XR_006251815.1 other upstream 852 5349955 ~ 5369589 (-) False LOC122351925
TU100767 other upstream 570654 5919757 ~ 5922820 (-) False LOC122351463
TU100782 other upstream 694172 6043275 ~ 6043925 (-) True G68124
TU100850 other upstream 750244 6099347 ~ 6099883 (-) False LOC122351979
TU100887 other upstream 897797 6246900 ~ 6261069 (-) True G68188

Expression Profile