RNA id: XM_043249345.1


Basic Information

Item Value
RNA id XM_043249345.1
length 1424
RNA type mRNA
GC content 0.40
exon number 6
gene id LOC122351925
representative False

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 5349955 ~ 5369589 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTGAAAAAATCCCTAACCGAAAGTATCGAGCCACTTCTGAAATGGACAGAGACGCTAAAAGGTAAACGCACCTTTACGCGAGCCCTAAACAGGATATAGTGCTCCTGCTGGGACGTGTTTTACTTGGTGAACAGTGATGCAGAGATGCACATACAGGAACTTACACTCACTTTCAGCTTGACATCTTCAACTAGAACAACTCAGAGAGCTGGATGAAAATGCTGCTAAACTTAACATTAATTATCTTCAGTTTAATCTTCATGTCCTTCTCtgGTAAATTTGTCTCTTCGTGTATCTACAAAGCCACGGGGGAAAAAGCTGTGATTTCATTCGATGGTGCAAAATTACAAGAGGAATATGAACTGAAATGgacacataataaaaacagagtttattttaaaaaaggctcAAAGGTTAAGGTCAAAGAGCTCGATGTCGATGAAGATGGATCTCTGATACTGACGGACGTACAGAAGGATAAATCTGGAGAGTACAAGGGCATCGTCTATGATTCAGAAGGAAGTTTAATAAAGGAAACCGTACAGCAGCTCTGTGTCCTGGAGCCAGTGTCTGAACCTACAGTCGTGGTGGAGTGTGTAGAAAAAGGAGTAAACCTGACTTGTAGCGCAGAGAACCACCGTGAGGTGCTTGTGTCCTGGATGAGAAATCACATGGAGGCTAATGTGACACATGCTTTTTTACACATCAGTCTGTCCGAGATCAAATCTGGAGATAGTTTCTCATGCACAGTCAGCAACCAGATAAGCCAGAAGTCAGCAAAAGAAGTTCAGCCCGCTTGCTCTGACGCAGATACGTCTGAGAAGAGATTTCTATTTGGCTTGGATTCGTGGTTGATGCTGGTGATCCTGACGGGGGGAGGAAgcttcctcatcctcttcatcatctGCTTAGTCGctgtctgctgctgctgcggacGAAACAAGAGGAAAGCAAAACGTGAAGAACAGCATCAGCTTGTCTCTTTAATGCCGTATCTTTAATACCTAAATCAGCCTGATGAGCAGAAAAAGGCAGCATTCTCTTTCTGCTAGTTATAAAAAGATGAAACTAACCTCAGCTTGATTCACATCGACCTGTATTTGATCTGCTGTTATTAATAAGTACCTGTGGAAATGGAAACATATCACACAGTGATTTACATTCAATCTAAGGATTACATGATCCTTTTTTCTTCACAACTCCTCCAGATGGCAGCAATGTGCTGAAAAAGCAAATCATGCTCCACTGAACTAGTATTAGAAACATAATTGTGTTtgacataaatgtgtgttaacCAGGTCAGATCAAGCAGAGTAAACATtacaaagtattttattttaatatgttcaaTGTTTTCtgttgcaaaataaatgcatagacTATTGTGTGacgtaaaaatgacaaaataaataaataaaataaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100482 lncRNA downstream 184587 5141790 ~ 5181500 (-) True G67917
TU100495 lncRNA downstream 265310 5099906 ~ 5100777 (-) True G67928
TU100488 lncRNA downstream 276694 5089182 ~ 5089393 (-) True G67923
TU100476 lncRNA downstream 314795 5050429 ~ 5051292 (-) True G67913
TU100474 lncRNA downstream 338490 5027044 ~ 5027597 (-) True G67911
TU100600 lncRNA upstream 27352 5396865 ~ 5397396 (-) False LOC122351915
TU100602 lncRNA upstream 27966 5397479 ~ 5398139 (-) False LOC122351915
TU100650 lncRNA upstream 345828 5715341 ~ 5715637 (-) True G68048
TU100655 lncRNA upstream 365411 5734924 ~ 5735172 (-) True G68053
TU100657 lncRNA upstream 365824 5735337 ~ 5735783 (-) True G68055
XM_043249340.1 mRNA downstream 16984 5346160 ~ 5349103 (-) True LOC122351922
XM_043249328.1 mRNA downstream 24866 5323729 ~ 5341221 (-) False LOC122351913
XM_043249337.1 mRNA upstream 21840 5391353 ~ 5394547 (-) True bzw1b
XM_043249331.1 mRNA upstream 27441 5396954 ~ 5399880 (-) True LOC122351915
XM_043249315.1 mRNA upstream 93801 5463314 ~ 5521286 (-) True myo1b
XM_043249316.1 mRNA upstream 93801 5463314 ~ 5521285 (-) False myo1b
XM_043249317.1 mRNA upstream 93801 5463314 ~ 5521285 (-) False myo1b
TU100497 other downstream 257700 5105894 ~ 5108387 (-) True G67930
TU100475 other downstream 336612 5028926 ~ 5029475 (-) True G67912
TU100470 other downstream 351274 5010513 ~ 5014813 (-) True dbi
TU100469 other downstream 351352 5010513 ~ 5014735 (-) False dbi
TU100414 other downstream 382340 4959717 ~ 4983747 (-) True G67863
TU100767 other upstream 550244 5919757 ~ 5922820 (-) False LOC122351463
TU100782 other upstream 673762 6043275 ~ 6043925 (-) True G68124
TU100850 other upstream 729834 6099347 ~ 6099883 (-) False LOC122351979
TU100887 other upstream 877387 6246900 ~ 6261069 (-) True G68188
TU101110 other upstream 1701472 7070985 ~ 7148620 (-) False LOC122351350

Expression Profile