RNA id: XM_043249351.1


Basic Information

Item Value
RNA id XM_043249351.1
length 5135
RNA type mRNA
GC content 0.48
exon number 29
gene id abcb11a
representative False

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 24533877 ~ 24558743 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTCCTGAACACAGGAAGAGACCTCAGACCTCTTTGAAACTGTGTATCAGCACTGAGCAGGAATCACTTGTGTTATTGTAACGGCTCCGGGCTGCTCGAGGCGTATTCGTTTAACAGAGGCAGAAATACAGAAGGACTTCAGTGGTTCTTCGTAAAGAGACGAGGCGCTGCTTCAAAAGAAATGTCAAGATCACTCAGAAAAGCGTGAGCTGGGACTGAGACACAGATGGGACGCATTGGAAAGACAACCCAAAAATATACCTGCCAACAGGAACGGATCCATTTCATGTGAATCAGTCGCTTCCTAAAGTCTAATAAAGGGGAAGATAGCGCAGAAGGTGTGGACAGACTGCACTGATAGAAGAGCCCCTCGGACATGAGAGAAACGCCACTCAGAGCAACTCCACACAGCAGATGCTACCAAAACTGAAGAATGAAGAATACAAGTGAAAACTCTCCGGGGGACCGCGCAGAAAAAACCACAGAATCATACAAAGCTGACGAAGATGCTGACCTCAAGAATGACAgcgacaaaacaaaaaaagagaaagctcTGACCGTTGGATTCTTTCAGCTGTTCCGGTTTGCGACGTGGAAGGAGGTGCTGATGATGGTGGTGGGAAGCGTGTGCTCTCTGGTCCACGGCGCCGCGGCTCCTCTCATGCTGCTGGTGTATGGCATGATGACCAACACCTTCGTGGACTATGAGCTCGAGATCCAGGAACTGGCCAACCCCAACAAAACCTGCATTAATAACACCATCACCTGGCTGGACGGGACTGTGGTCGAGCGGCCGGACAACAGCACCACGTACTGTGGTGTGGATATTGAGGCTGAAATGACCAAGTTTGCGATTTACTACGTTGGAATTGGCATTGGAGTCCTTATTCTGAGTTACTTTCAGATCGCTCTGTGGGTTTCTGCCGCCGCCAGACAGATCCAACGCATCAGGAAAATGTACTTCAGGAAGATAATGCGCATGGAGATCGGCTGGTTTGACTGCAACTCCGTCGGAGAGCTGAACACAAGGATATCTGACGACATCAACAAAATCAACAATGCCATAGCAGACCAGGTGTCCATCTTCATCGACAGGATCTCTACGTTCATATTTGGTTTcatggtgggattcatcggcgGATGGAAGCTGACTCTGGTGGTGATAGCCGTCAGTCCTCTCATCGGATTGGCTGCAGGACTCATGGCGATGGCTGTGGCGAGGCTGACGGGCCGTGAGTTGATGGCTTATGCTAAAGCAGGAGCAGTGGCTGATGAAGTCCTTTCCTCCATCAGAACGGTGGCCGCTTTTGGAGGAGAGCACAAAGAAGCAGAGAGGTATGACAAGAACCTCGTGGAGGCCCAGGCGTGGGGTATTAAGAAGGGAGCGATCATCGGTGTGTTTCAGGGTTATCTTTGGTGCATCATATTCTTGTGTTATGCACTGGCTTTCTGGTACGGCTCAAAACTGGTGATTGAAACCAAAGAGCTCACGCCCGGTGGCCTTGTTCAGGTATTTTTTGGGGTTCTTATAGGTGCAATGAATCTGGGTCAGGCCTCTCCTTGTCTTGAGGCCTTTGCCTCTGGTCGGGCTGCAGCCAAGAGTATATTTGACACCATTGACAGGGAACCAGAAATCGATTGCTTCTCAGAAGAAGGTCATACGTTAGACAAAGTTAAAGGTGACATTGAATTCCACAGAGTTGACTTCTACTATCCCTCCCGCCCTGAAGTGAAAATATTAGATAATTTGAACGTTGTGGTCAAAGCTGGTGAAACAACTGCATTTGTTGGACCTAGTGGATCGGGAAAGAGCACAGGAATACAACTCATTCAGAGGTTCTACGACCCAAAAGAAGGAAAGGTCACCCTGGACGGTCACGACATCAGAAGCCTGAATATCCAGTGGCTGCGTTCTCTCATCGGTATAGTGGAACAAGAGCCTGTTCTGTTCGCCACCACCATTGTGGAGAACATCCGATACGGCCGTCCTGGAGTCACCATGGAGGAGATTATAGAAGCCACCAAACAGGCCAACGCTTACAACTTCATCATGGCTCTTCCTCAGAAATTTGACACGTTGGTGGGCGAAGGCGGGGGTCAGATGAGCGGAGGGCAGAAACAGAGGATCGCCATTGCTCGAGCGCTGGTCAGGAATCCCAGAATCCTCCTGTTAGACATGGCCACATCAGCGCTGGATAACGAGAGCGAGGCCGTGGTACAGGAGGCCTTGGACAAGGCTCGACAGGGGAGAACGACGATCAGCATCGCACACCGTCTGTCCACCATCCGCAACGCAGATGTGATCGTGGGGTTCGAGCACGGACATGCTGTAGAGAGAGGCACGCACAGCCAGTTGCTGGAAAGAAAGGGAGTTTACTTCACACTAGTAACCCTGCAGAATCAAGGAAAGGATACAGACGGCGATAAACCAGAGGACACTGCTGAGATGACGGTTACAGATGAGGATGAACTTGAGAAAGTAAGGCGCTTCAGCAGAGGAAGTTACGAGAGTGCCTTAAGGCGTTCTTTGAGACAGCGGTCACATTCTCAGATGTCAAGCAACATTCCCGACGCCATATCTGGAAATTTCAAAATCTTCGACCATTTAGAAACGGAGGAAGTTGAAGCGCGCGACAAGaaaaaaaagaggaaagaggaAAAAGTCATTGAACCGGCTCACGTGGCACGAATCCTGAAGTATAACCGTCCCGAGTGGCCATATATGCTGCTGGGCTCTTTAGGTGCTGCCATTAATGGATCGGTCAACCCCATCTATGCTCTTTTATTCAGTGAAATCCTTGGgACATTCTCCATTCAAGACCTAAACGAACAGAGGAGGCAGATAAACGggatttgtattttgtttgttagCGTAGGAATCCTGAGCTTCTTTTCGCAGTTCTTACAGGGCTACTCATTTGCCAAATCAGGCGAGCTGTTGACTCGCAGGCTGAGGAAGGTTGGATTTCAGGCAATGCTGAAGCAAGAGATCGGCTGGTTCGACAACCCCATGAACAGTCCTGGTGCTCTGACTACTAGACTAGCCACTGACGCCTCCATGGTGCAGGGGGCTACAGGTTCACAGATTGGCATGATCGTGAATTCTCTGACCAACATCGGCGCGTCCTTCATTATTGCGTATTTCTTCAGCTGGAAACTGAGTCTGGTGGTCACCTGCTTCCTTCCTCTCATCGGCCTGTCTGGGGTTTTTCAGGCTAAAATGCTGACAGGATTTGCCAATGAGGATAAAAATGCATTGGAGGCTGCTGGACAGGTGTCCAGTGAAGCTCTGAGCAACATCAGGACCATCGCCGGTTTAGCCAAAGAGAAACACTTCGTGTCTCAATATGAAGAGCGACTACAAGCACCGTATAAAGGGGCCAAGAAGAAAGCTCATGTTTATGGGGTCTGTTTTGCATTTGCCCAGTGTGTCATTTTCATGGCCTATGCTGCCTCTTTTAGATACGGCGGCTATCTGGTCAGCAATGAGGGACTTTCATACATGATGGTGTTCAGAGTCATTTCAGCTCTTGTGACCAGCGCCACTGCACTCGGCAAAGCTTCGTCTTTCACGCCAGATTACGCCAAGGCCAAGATTGCTGCCGCTCAACTTTTCAAACTGTTGGACAGGGTTCCCAAAATTAGCATCAGCAAATCAGAGGGACAAAGTTGGGATGACTTTAAGGGCCGGATAGAATTCAAAGGGTGCAGGTTCACGTATCCCAGCaggccagacatccaggtttTGAGGGGTCTGGAGGTGTCAGTAAATCCAGGACAGACTCTTGCTTTTGTGGGAAGCAGCGGCTGTGGGAAGAGCACCAGCGTTCAACTGCTGGAGCGATTCTACGACCCCGACGAAGGGCAAGTGATCATCGACGGACGTCCATCTGCGAGCATCAGCGTGCCCTTCCTCAGGTCACATATTGGCATCGTGTCCCAGGAGCCGGTGCTGTTCGACTGCAGTATCGCCGAGAATATCCAGTACGGCGATAATTCCCGTACCGTGAAAATGGAGGAGATTATAGAGGCTGCTAAGAAGGCCTATCTGCATGATTTTGTGATGACACTACCTGATCAATATGAAACTCAGGTCGGTGCTCAGGGCTCTCAGTTATCCCGTGGACAGAAACAGCGCATAGCCATCGCAAGAGCCATCGTCAGAAACCCTAAAATCTTGCTCCTGGATGAGGCCACGTCTGCACTCGATACTGAGAGTGAGAAGGTCGTTCAGGCCGCTCTCGACGAGGCCCGTCAGGGACGCACGTGTATCGTCATCGCTCACAGACTCTCCACCATTCAGACGGCTGACATCATCGCTGTGATGTCACAGGGCGAGGTCATCGAGAGAGGGACACACGAGGAGCTCATGGCCAGGAAAGCAGCATACTACAAGCTTGTCACCACGGGGGCGCCTATTAGTTAAAAATGACATAGTGTTCGGACGAGCAGGGAGTCCCTCCTCAAACTCACGCCATTATTTGAGCAGGCTTTGGTTTGTCTGGCCTAGTCGGGTTTCTCACAGAAATGACATCTCATTGCATTTGTTAATGGAATTACTTAACAATTGTGGAGGTGTTTttgatttatatgtatttatttattatgttttggcACTATTCTCATGTGTTTGAATCATACACAGCCAGCTATGACGTGTTTTCTTtgctgttttcaaaatgcttgCAAAAGGTTGCAGAGATCTGTCGTAGCAGCTGAAGATATGGTGTCCTTGAACAGCGGCGATAATAGTACGGGACTGATAACGTGCTCATAATCGCTGATATCTTTATGCTCAGTCATTGTTTAATGTAGTGCCGTGTGTGATCTCTGCTTTTCACGTCTCGTTTATTGTCATTCAGATGTTACAGATGAACGCGTACgtattaaaaagtcattttaaaactgtatgtaatttatacatatttgtcATTATTAATTTAGCCTTCAGTGAGGATGTGCTCATTCAGCTATAAGCAATAATTAGTATGCCATTGCATTTTTTCtagcttgtttatttgttccaggggCCTTAGAGGgcttaaatgttttgtaaagggatttgtttgtgaaaataaaagtaCCTTACCTTACCTAGTGACTTtaccttaataaataaaaaaaaaaaaaaaaata

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0006200 obsolete ATP catabolic process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0042626 ATPase-coupled transmembrane transporter activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU108125 lncRNA downstream 12569 24513094 ~ 24521308 (-) True G73077
TU108005 lncRNA downstream 248187 24253362 ~ 24285690 (-) True G72980
TU108009 lncRNA downstream 249712 24281991 ~ 24284165 (-) True G72984
TU107925 lncRNA downstream 552639 23926223 ~ 23981238 (-) False G72929
TU108133 lncRNA upstream 6138 24564881 ~ 24571112 (-) True G73084
TU108266 lncRNA upstream 180583 24739326 ~ 24745938 (-) True G73160
TU108285 lncRNA upstream 217417 24776160 ~ 24778655 (-) True G73175
TU108295 lncRNA upstream 242295 24801038 ~ 24801377 (-) True G73179
XR_006251791.1 lncRNA upstream 253573 24812316 ~ 24820878 (-) True LOC122351686
XM_043248138.1 mRNA downstream 829 24529672 ~ 24533048 (-) True spc25
XM_043248139.1 mRNA downstream 1099 24529672 ~ 24532778 (-) False spc25
XM_043249564.1 mRNA downstream 51790 24425526 ~ 24482087 (-) True stk39
XM_043249607.1 mRNA downstream 340075 24142666 ~ 24193802 (-) True csrnp3
XM_043248992.1 mRNA downstream 495747 24029509 ~ 24038130 (-) True slc38a11
XM_043248836.1 mRNA upstream 13119 24571862 ~ 24667167 (-) True lrp2a
XM_043249293.1 mRNA upstream 158867 24717610 ~ 24727730 (-) True fastkd1
XM_043248298.1 mRNA upstream 169625 24728368 ~ 24733782 (-) True ccdc173
XM_043249729.1 mRNA upstream 196145 24754888 ~ 24758657 (-) True mettl5
XM_043248413.1 mRNA upstream 202798 24761541 ~ 24764855 (-) True cxcr2
TU108001 other downstream 253169 24220522 ~ 24280708 (-) False G72978
TU108002 other downstream 253169 24231235 ~ 24280708 (-) False G72978
TU108000 other downstream 253169 24271455 ~ 24280708 (-) True G72978
TU107931 other downstream 573552 23956219 ~ 23960325 (-) False grb14
TU107929 other downstream 602548 23930207 ~ 23931329 (-) True G72930
TU108324 other upstream 468842 25027585 ~ 25030965 (-) True G73201
TU108463 other upstream 790035 25348778 ~ 25349640 (-) True G73301
TU108462 other upstream 897671 25456414 ~ 25458742 (-) True G73300
TU108524 other upstream 1231774 25790517 ~ 25793056 (-) True G73347
TU108525 other upstream 1235340 25794083 ~ 25832356 (-) False LOC122351758

Expression Profile