RNA id: XM_043249371.1


Basic Information

Item Value
RNA id XM_043249371.1
length 1773
RNA type mRNA
GC content 0.45
exon number 17
gene id LOC122351939
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 10446980 ~ 10462522 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AAAGGAAACTCAAAGAAAGGTGCGATGAAAACTTCAGTCGTTGTTGAAAGTCATCAAGCAGAGCTCAACATGCCATCGAATCAAATTATTTGTGCACTTTGCAAAAAATCAGACGAAACTGAAGTCACCGGGCCCCTCTCCTCCAAACACAACATCTCCGCACATCAAAACTGTTTGTTGTACGCATCAGCGATCTTCTGCACGAATTCACCCACCTACGACGACCTGTTTGGATTTGATGTAGAAGATGTGAAGAAAGAGCTGAAGAGAGGGAAAAGACTATTTTGCCACTACTGTAAGAGAGCCGGTGCTACAGCCGGCTGTGACGTGAAGCGCTGTAAACGCTCGTACCATTACCCCTGCGCCATAAAGGACCGAGCCAGAGCCGCTGAAAACAGTAACGAAGGCAGTTATAAATTGTTCTGTGCATTACATGTTTcagaatccaaaaaaataagtCCTTTAAAAGTGTCGTCTCCTCAGAAAGCTTCTGGATCATCAGACCATCCAGAAGATTTGAAGGACAagAGTCCACATACATTCCCATATATGTACAGACGACGTTTGCGTGTgCCCAGGGGAACATATAACAGCACTCCAGACTCAAAATCAgATGATGAAAGCCCAACAAGCGCTGACTGTGTAATAGTTTCAGGGGTGTCTGATCCGGAGAACTCTGTGCTACAAAAACAGCCCAATCAGTCCAGTCCTGTGCCTAAAAGAAAGAGGCTGTGTGAAAAACTCAAACCATCACCCACAGaagCTGACGACGACACAGACGTTGATTCGtctcaggAAGAGTCTCAGAGTTTGTTATTCTCAAAACGGTACCGTATCACAATGCCCTGTCAAGTTATTTTGGACTCTGGACCCTCTGTAGAATCAGAGCACAGTCTAGAGCCTTCTTCACCTGCCAGTGCAGCTGTGTCTACCTCCCCTGAACAGAAGGAAACGGCGTCCACAAGCAGATCTTCTCCAGCGCCCAGAGCTCCGACCACTGAGCCTGTCTCACCAACTATTTATTCTGTGCCTGCTGTGGAGCGTTTCAGCTGTGATTCAGGTCGTCCCGCTGCAGCGAAGGCCTCTAAAGTGGGCACCACAGAGAAACCCAAGTCCAGTGCCAGCGTGTTTTGGACCCGATGTAACGAGGCTGGGTGGACCAAAGAGATCTTCTCAGAGCTCGAGTCTCAGCTGAGCAGTCTTGGAGAAAGAGTGCAGTCACAGAAAGCCAGTGACCAAGATTATGATGCTGCTCTCAAAGTGTTGGAGGCATCTGGACGTCTACCTTGCATTATTTCTCAGCTGGAACAAGACATAGAGAAACAGGAACAGGacttaaagaggaaaaaagcagCACTGAGGGATGCCAAAGCTGTACTAGATGTTTAATGTATAAAACATGAACGTGATGTTCTAGTTGCAACTGAAACTGACAAAACAGCCCCTGATGAGGCTTTAGATCAACCAACTTGCCTGAAGGGCTAGTCGAAGCTGTTACTCGTGTGCTTTCataagagagaaaagaaaagtctGTTCCCAAGTATGGCCACTAGGTGGCAGCAGACACATAACTGCTTTCAGAGACTCAAAACATTCCGTCGTCTTTCGACTCTTTGTCCTTTCAACTGCGCTGTTTAGTCCAAACTTTTCCTgaacagtttttacatttatttacattccataaatattacaatacttttaaaaaagtattttaaaaacatgattcatataattaataatcagtCCATGtacattcagaaataaacataccaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU102406 lncRNA downstream 213 10445277 ~ 10446767 (-) True G69231
TU102394 lncRNA downstream 2339 10444293 ~ 10444641 (-) True G69228
TU102379 lncRNA downstream 20515 10426227 ~ 10426465 (-) True G69223
XR_006251782.1 lncRNA downstream 183533 10253933 ~ 10263447 (-) True LOC122351639
TU102286 lncRNA downstream 204768 10173936 ~ 10242212 (-) False G69157
TU102549 lncRNA upstream 374990 10837512 ~ 10844040 (-) True G69346
XR_006251830.1 lncRNA upstream 387301 10849823 ~ 10908594 (-) False LOC122352018
TU102556 lncRNA upstream 387301 10849823 ~ 10891473 (-) False LOC122352018
XR_006251829.1 lncRNA upstream 421133 10883655 ~ 10908594 (-) True LOC122352018
XR_006251756.1 lncRNA upstream 467958 10930480 ~ 10946744 (-) False LOC122351427
XM_043249373.1 mRNA downstream 3361 10438773 ~ 10443619 (-) False trim13
XM_043249374.1 mRNA downstream 5108 10433507 ~ 10441872 (-) False trim13
XM_043249372.1 mRNA downstream 5109 10438773 ~ 10441871 (-) False trim13
XM_043249378.1 mRNA downstream 27594 10416256 ~ 10419386 (-) False rnaseh2b
XM_043249377.1 mRNA downstream 27636 10416256 ~ 10419344 (-) True rnaseh2b
XM_043249742.1 mRNA upstream 473 10462995 ~ 10479085 (-) False mcf2lb
XM_043249744.1 mRNA upstream 473 10462995 ~ 10476744 (-) False mcf2lb
XM_043249741.1 mRNA upstream 473 10462995 ~ 10476744 (-) False mcf2lb
XM_043249743.1 mRNA upstream 473 10462995 ~ 10476742 (-) False mcf2lb
XM_043249740.1 mRNA upstream 473 10462995 ~ 10476740 (-) True mcf2lb
XR_006251819.1 other downstream 5108 10433507 ~ 10441872 (-) False trim13
XR_006251818.1 other downstream 5108 10433507 ~ 10441872 (-) False trim13
XR_006251820.1 other downstream 5108 10433507 ~ 10441872 (-) True trim13
TU102057 other downstream 536802 9908188 ~ 9910178 (-) True LOC122351483
unassigned_transcript_1465 other downstream 2105965 8340943 ~ 8341015 (-) True trnak-uuu_106
XR_006251803.1 other upstream 52750 10515272 ~ 10519457 (-) False fdx1
XR_006251823.1 other upstream 217636 10680158 ~ 10686627 (-) False mrasa
TU102802 other upstream 1034488 11497010 ~ 11499372 (-) False LOC122351308
XR_006251743.1 other upstream 1704469 12166991 ~ 12189656 (-) True gtdc1
TU102995 other upstream 1959907 12422429 ~ 12423446 (-) True G69650

Expression Profile