RNA id: XM_043249372.1


Basic Information

Item Value
RNA id XM_043249372.1
length 2733
RNA type mRNA
GC content 0.53
exon number 2
gene id trim13
representative False

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 10433507 ~ 10443619 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTGCCTGTTCTCATGATTAGATTTCGAGACTGTCACGtatatttgtacattattttatgACGGGTACAAATGTGAGACAAGGTGATTAAAGTTCAAACGAGCTTAAGCAGAAAATCACCGGtcaaacacacaccacagcGTTGAATTACACTGTTGtgaatttgtatgtttttgaacGTAGGCGTCCCCCTTGTGAGTTTCCGTTTGTGTTATTATCgagttaactaaataaaaacaatcataagAGGCGCTTATCCCGTTTCTACGACGAACCGGTTCGCCGAGCCCTCTCGCGGCCAATTACGTCACTGCACGCGCTTTCATCCCTGCCTCGACCAATCAGCGCGGCGCCTCGGAAGCCCTTCTCTTCCTGATGGCATGGAAACAGGGGAAGAAAAATCGAGGTCAAAATATTTTGACACGTGACTCGGTAGCGATTGGTTATCGATGCGTCAAGACCCCGACACATGGCACGGACATATGCGACCGAAAGTGGCGCGATGAAGGATCGTCTTTATGGCAGAAAACCCGACGTGTTTTTTTGGTCGCCCGCGTCTGTGACACATGAGTTGGATGCAAACGAAAATCACTCGGTTACTGTAGCTCGGTGAATAGGTGAATTAGGCGTTTATGGGGGTAGATGATGGGTAACGCCAGTATTGACGTAATCTGTAGAGAAACGCTGATCTAGGAGAGAGCGAGCGCTCCCCCGCAACAACCCCGTCCAAGAAGGAAGGGATCCTCTGCATTTCTTTCTCACCGACAAAAACGTGCATCCAAGCGCTCGAGTCTGCAAATACACTTCGCTACGCGGATATTACGCCGCACGCGCCATTGAAACGTTTGCCTTTAGATGAAGCATTCATTAGCCGTCTGTTCGCCTTCTTTTTAGTCGCCTGGCCGTACTGACTTGACCTGAACTAGTTAAAATTTCCCAATTGGAAAGGGCGAAGTCTGCACAGCAACAAGAGCCGCGATTGCGTTGCACACCGCCTAAGCATCCAGCGCGCTTCTGGTCCAATTGCTGATGTTTTCCGCCTGCAAAATCTGCCACAACCGTAGTAATACCTTGACAACCGGACCCGGGCGAACCGAGAAACACTTTTGACAACTCGACAGCGGGgaatctttttttctaaatcaatGCCTTGAAGTTTGTCGGACGGGTCCTCGGATATTCCCGCACGAAAGTTCTCACgctgcaattaaaaatgaagcacTGGTGCACTCAGGAGTCTCCATCATCAGGATACGATGGAGCTCTTGGAGGAGGACCTCACATGCCCAATATGCTGCTGTCTTTTCGAGGACCCGCGCGTTCTGCCGTGCTCTCACAGCTTCTGCAAGAAGTGTCTGGAGGGCATCCTGGACGGTAACCGGAGCCCTGCTTGGAGACCGCCGTTCAAATGCCCGACCTGTCGAAAGGAGACCGTGCACAACGGCATCGCGAGCTTGCAAGTCAATTACTCCCTGCGTGGCATCGTGGAGAAGTACAACAGGATCCGAGTGATGCCGAGGATGTCTCTCTGCCGAGTTCACAGCGGGCAGCCTCTCAACATCTTCTGCGCCACCGACCTGAAGCTCATCTGCGGCTTTTGCGCCACGACGGGCGACCATAAAGGACACAAGTTCTGCGCGCTGGAGGAGGCGTACGAACGCGAGAAGCTCGCGTTTGAGGAGTTGTTCCGCGTCGTGGAGAGCTGGAAGGGCGCGGAGGTGCATTCGTGCCTGGAATCGTTAGAGGGAGCGAAGAGGAAAGCGCTGGAGAGGGTCTCGCGGGACGCGGATCGGGTCTCAGAGTACTTCGACAAACTTTTGCGCACGCTGGGGCACAAACGCAGCGAGATCCTCTCGGACTTGGAGACCCTGAAGCTCGCGGTCATGCAGACCTTCGACCCCGAGATCAACCAGCTCCGCTCGGCGCTCGAGGAGCAGCAGCGCGCGCTCAGCATCGCCGAATCCTTCCGCTCGCTTTCGGACCCGCTCGCTTTCCTCCAGCAGATGCAGGACTTCAGGGAAAAGCTGCGCGTCATTCGGGGAACGCCGCTGCCGACGCGGACGGACGTGGACGTGGGGCTGCTCGGCCTCCGGAGCTTCGACGTGAAGGAATGGGACCGGGCGCGCCTGGGAGAGGTGGACAAGCTGTGCGCCCCCTACGAGAGCAGCACCTACCTGGCCTCGCTGCCCCCCGCTGCCGCTCCGCGCTACTCCCGCGTGCTCTGGAGAGTCGTTCTGGTCGTATGCGCGTGTCTCCCGGCGCTGAACTTTCTCCCGTCGGACTGCCTCGCTCTGAGCTTCCAGGATAAGGTGGTCGCACTCGGTGGCTTTTCTCTGCCCGGTCCTAGGGAGATCGCGCGCTGGCTCGGGTTCTGCTGGAAAGAAGCGGAGGCGATCTGCGCGCTACTGACCGAGCTGTGTCGGAACTGTATCTTGGACCTGATAAACACAACATCAGATTTCCTCAGCTGATTTTGTAACTCCATTCATTAGGTACTTTTTTTTACGTCCTACAATGTGCCAACCTAGAAAATCCCGTAGCATTGAGAAAATTTAGCTCGTGTCTGTTTTTGAGTGTGTAATGAGAATGGCTGATTCATACACAGTCAGCATTTGTGTGCCGGTAAACCGCACTTATCGTGTAAACGGACAAGCGAGTGGAACGGACGGCTGTTTACTAATGGGATGACATCCCCAAATCTttcattgatttaataaaatgccTTGTTCACTTAA

Function

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008270 zinc ion binding molecular_function
GO:0016874 ligase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU102379 lncRNA downstream 12308 10426227 ~ 10426465 (-) True G69223
XR_006251782.1 lncRNA downstream 175326 10253933 ~ 10263447 (-) True LOC122351639
TU102286 lncRNA downstream 196561 10173936 ~ 10242212 (-) False G69157
TU102283 lncRNA downstream 263915 10171769 ~ 10174858 (-) True G69157
TU102297 lncRNA downstream 300014 10136649 ~ 10138759 (-) True G69168
TU102394 lncRNA upstream 2422 10444293 ~ 10444641 (-) True G69228
TU102406 lncRNA upstream 3406 10445277 ~ 10446767 (-) True G69231
TU102549 lncRNA upstream 395641 10837512 ~ 10844040 (-) True G69346
XR_006251830.1 lncRNA upstream 407952 10849823 ~ 10908594 (-) False LOC122352018
TU102556 lncRNA upstream 407952 10849823 ~ 10891473 (-) False LOC122352018
XM_043249378.1 mRNA downstream 19387 10416256 ~ 10419386 (-) False rnaseh2b
XM_043249377.1 mRNA downstream 19429 10416256 ~ 10419344 (-) True rnaseh2b
XM_043248304.1 mRNA downstream 27259 10408759 ~ 10411514 (-) True LOC122351326
XM_043248140.1 mRNA downstream 149258 10285026 ~ 10289515 (-) True cmss1
XM_043248859.1 mRNA downstream 154151 10278858 ~ 10284622 (-) True tmem30c
XM_043249371.1 mRNA upstream 5109 10446980 ~ 10462522 (-) True LOC122351939
XM_043249367.1 mRNA upstream 5512 10447383 ~ 10454136 (-) False LOC122351938
XM_043249366.1 mRNA upstream 5512 10447383 ~ 10454135 (-) False LOC122351938
XM_043249365.1 mRNA upstream 5512 10447383 ~ 10454135 (-) False LOC122351938
XM_043249368.1 mRNA upstream 5512 10447383 ~ 10454135 (-) True LOC122351938
TU102057 other downstream 528595 9908188 ~ 9910178 (-) True LOC122351483
unassigned_transcript_1465 other downstream 2097758 8340943 ~ 8341015 (-) True trnak-uuu_106
XR_006251804.1 other downstream 2343926 8079136 ~ 8094847 (-) False als2a
TU101496 other downstream 2420668 8014449 ~ 8018105 (-) False LOC122351623
TU101110 other downstream 3290153 7070985 ~ 7148620 (-) False LOC122351350
XR_006251803.1 other upstream 73401 10515272 ~ 10519457 (-) False fdx1
XR_006251823.1 other upstream 238287 10680158 ~ 10686627 (-) False mrasa
TU102802 other upstream 1055139 11497010 ~ 11499372 (-) False LOC122351308
XR_006251743.1 other upstream 1725120 12166991 ~ 12189656 (-) True gtdc1
TU102995 other upstream 1980558 12422429 ~ 12423446 (-) True G69650

Expression Profile