RNA id: XM_043249378.1


Basic Information

Item Value
RNA id XM_043249378.1
length 1085
RNA type mRNA
GC content 0.46
exon number 10
gene id rnaseh2b
representative False

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 10416256 ~ 10419386 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACTTCTTATACGTGCTTAACCAAACGTGAAGTAGCATCAGAATAAAACATGACTTCGGGTTTCACACCCTCTTTGTACTGTACACAAACATTTGCCGCCATTTTTCTGCAGGCAGAAACTCTCAACAGGTCTTGTGTTCTCACGTTATTATCACCAGACTACAGGTCGATGCGCTATTAAATCAGCCCTTAAAATGACTACTAAAAAGAAACGCTCTGTGCACACCGACAACGACAGTTGGGTTGTCATTGCTCCAGATTCAGCACTGGACACGGGCAGGTCTGAAGAGGGAGACCCATCCTTCATCAAACTAAAGAATCCTGCTACAGGCGGTTCTTCACTGTACATGTTCGGCTGTGGCGATGTCTCTGTTTATGAAGTAAAAGCCTTTTCTGAAGACTTTCGCTCTTGGTTTATTGGACAGACGGTACAAAGAGATGGCAGGCTGCTGTATGTGACCCCCATCGATCCTTTATTCCTGCTGTTGCCATACATTAGCAGTACTGCCACTGAGGGAAAGTTCCAGCCGGCGAAGCAGATGATTATGGATGAGGATTACCCCGGATGCACTAGACTTCTGCGTTGCAAACAGGGACTGGATTGCCTTCATCATGTGGCTGATGAGAAAGaggtgGGCGATTTAAAGGTCCACAGATATAACCAGGAGAAGACCTTGGAGTGGCTCAAGAAAAAggTCCAGCGCACGATAATAACACTCAAAAAGAGCGACGTATCTGTGGGTGGAGGAGTGAAATCCAGCATGTATGTCCGAGTGAAACATGAAGATGCTACCGAAgAGGACTACTTGCGTTATGCACATGGCCTCATATCGGAGTACATCAGTGAAGACTTGAGCAAAGCCCTCCTGAAGCATCTGCAATTGCCAGAGATATCCAGCCCTAAAGAGACGGAGCCACCTTCTAAGCCACCGAAGAAGATGACTGCAGCTCAGAAGAGCCTCGCCAAGGTAGACAAAACTGGAATGAAGAGCTTGTCGGCATTCTTCAGCCCCAAAGTCAAACAAGAGAAGAACTGAGGGTTTAAGGGTCAAAACATTTTGCTAATAAAGTTATTAGAAAATAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251782.1 lncRNA downstream 152809 10253933 ~ 10263447 (-) True LOC122351639
TU102286 lncRNA downstream 174044 10173936 ~ 10242212 (-) False G69157
TU102283 lncRNA downstream 241398 10171769 ~ 10174858 (-) True G69157
TU102285 lncRNA downstream 243271 10117793 ~ 10172985 (-) False G69157
TU102379 lncRNA upstream 6841 10426227 ~ 10426465 (-) True G69223
TU102394 lncRNA upstream 24907 10444293 ~ 10444641 (-) True G69228
TU102406 lncRNA upstream 25891 10445277 ~ 10446767 (-) True G69231
TU102549 lncRNA upstream 418126 10837512 ~ 10844040 (-) True G69346
XR_006251830.1 lncRNA upstream 430437 10849823 ~ 10908594 (-) False LOC122352018
XM_043248304.1 mRNA downstream 4742 10408759 ~ 10411514 (-) True LOC122351326
XM_043248140.1 mRNA downstream 126741 10285026 ~ 10289515 (-) True cmss1
XM_043248859.1 mRNA downstream 131634 10278858 ~ 10284622 (-) True tmem30c
XM_043249420.1 mRNA downstream 168764 10239297 ~ 10247492 (-) True col8a1a
XM_043249349.1 mRNA downstream 178292 10236298 ~ 10237964 (-) True jagn1a
XM_043249374.1 mRNA upstream 14121 10433507 ~ 10441872 (-) False trim13
XM_043249373.1 mRNA upstream 19387 10438773 ~ 10443619 (-) False trim13
XM_043249372.1 mRNA upstream 19387 10438773 ~ 10441871 (-) False trim13
XM_043249371.1 mRNA upstream 27594 10446980 ~ 10462522 (-) True LOC122351939
XM_043249367.1 mRNA upstream 27997 10447383 ~ 10454136 (-) False LOC122351938
TU102057 other downstream 506078 9908188 ~ 9910178 (-) True LOC122351483
unassigned_transcript_1465 other downstream 2075241 8340943 ~ 8341015 (-) True trnak-uuu_106
XR_006251804.1 other downstream 2321409 8079136 ~ 8094847 (-) False als2a
TU101496 other downstream 2398151 8014449 ~ 8018105 (-) False LOC122351623
TU101110 other downstream 3267636 7070985 ~ 7148620 (-) False LOC122351350
XR_006251819.1 other upstream 14121 10433507 ~ 10441872 (-) False trim13
XR_006251818.1 other upstream 14121 10433507 ~ 10441872 (-) False trim13
XR_006251820.1 other upstream 14121 10433507 ~ 10441872 (-) True trim13
XR_006251803.1 other upstream 95886 10515272 ~ 10519457 (-) False fdx1
XR_006251823.1 other upstream 260772 10680158 ~ 10686627 (-) False mrasa

Expression Profile