RNA id: XM_043249397.1


Basic Information

Item Value
RNA id XM_043249397.1
length 1819
RNA type mRNA
GC content 0.48
exon number 3
gene id mnx2a
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 7363964 ~ 7366993 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TAGAGATGAAAACACGCAGTTATAGAGTAACAAAGTTTCCTCGATTGCCTTAAAGAATTAGATAATATTACGCACGGTCAGGCGAACAGCTTGGTACATCTTAAGTAAAAGTTTTGACTGGCACGCGCTTAAACGTacactatttaataatatattcagCTCGTAAGATTCTCGAGAGCTGAAGTTTTTCTCAATGGATAAGTCGAGGAACTTCCGAATAGACGCTCTGttgtcagagagctctcagcgGATGGCGCGCGAGGCTTCGCCGGGACTGTGCACCGACGGCACCGACATCGAGCCTGCGACCTGCAAACGGACAGAGAGCTCTCCTCCCCGCGCTTTCCAGCTCCAGACGGGGGTCATACCCAAACCGGGCATGCTGAACATCTCTCACCCAGGATTAACGTCGCTTTCCCAAGGGTCTATTCCGGGAATGTATCCCTCGCCTATGTACTCCATCACGGCTCTTGGAGCGCAGCATCCCACCTTCGCGTATTCAGGCTTCGCGCAGCCGTACCCCGAGCACCTAAAAGCGGCGGCCGTGGCCGGTTCGTTTCCGCTAGAGCACTGGCTCCGCGCTGGACTCATAATGCCTCGCCTCGCAGACTACAGCGGGGCACCTCAGTCTGGTTTAATAGGAAAGTGCCGGAGACCACGCACGGCCTTCACCAGCCAGCAACTGTTGGAGCTGGAGAATCAGTTCAAACTCAACAAGTACCTGTCACGGCCCAAACGCTTCCAAGTGGCCACCTCTCTCATGCTGACTGAGACTCAGGTGAAGATTTGGTTCCAGAACCGACGGATGAAGTGGAAGCGCAGCCGTAAGGCTAAAGAGCAGGCTACGCAGCTGGAAACAGACGGCTCCAAGTCAGGCAAGAGAGAAACCAAGCCCAAAGACCTCAGTCGCTGCAGTGCACATGATGACGATGAGGATCTGGACGCCGAGGAGGAAGacgaagaagaggaggaagagttcAGAAAATCGATCAACGCAGGCGTGGGTCTTCCTCACCCCTCGGACTTCCTGAGCTACAGCTCTCACGGCTCTTACTCTGACGACGACCTAGAAGAGATCGGAGGAGACCGAAAGATCAGGCTCGGGTTATGAAGAACTGATGGCACCCGCACGTCCACGAACTGGACGGGTTTAAAGACTGAAAGCTGTTGATGTCAAAACTATCCCTTAGACCCAACGAGTTCCTTGTCCATGACGTTTGTAgtcaaaaaatgtcttaattcaTGAAAATGGTCTTCCAGTTTATTTgcacttaatatttttcttggAACGCTGCTTGTAAACTGCAAATGTATGCTATTTCAGactaacgtttttttttttcttatgtgatCAGAATATTTACTTTATGTGCTAACACGGACATTTCggttgaaaaaaaaggaaagctgTTGAACCAAAACGAGGAAGCCTCGCACTGAAACGTCACAGGCTGACACTTGTGCTCACTGGTCTCTTGAACACGTTTAATTTAATAGTGCGTAGTCAAGAGTGGGTGCTGAAGAACAGATGATTGTCCAGAGGTCATCAATGTCAGCTTTCTTTCAGTAACCATTGACTGGAACACGGAGGAACTGCTAAATCCTCTGTAAATATTGAACAAGGGCAAACTGTGAACGGTGCATTAGTTAGTCCATTAGTTTATGTcatgttgttgatgttggtgtctttaatgttatttaactGTTATAGATTATATCTAATTTATTCAACCGATATCAGGACTCAGTCTGAAGGATGTGTGACCTTTAAGATTGCCGGTAAAACATGTACTTGGAGACAAAAGGGAAATAAACAAAA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0021520 spinal cord motor neuron cell fate specification biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101200 lncRNA upstream 27605 7335491 ~ 7336359 (+) True G68435
TU101154 lncRNA upstream 62469 7298033 ~ 7301495 (+) False G68397
TU101158 lncRNA upstream 65679 7280767 ~ 7298285 (+) True G68397
TU101189 lncRNA upstream 100251 7262541 ~ 7263713 (+) True G68424
TU101162 lncRNA upstream 104570 7256680 ~ 7259394 (+) True G68401
TU101216 lncRNA downstream 486488 7853481 ~ 7854278 (+) True G68446
TU101545 lncRNA downstream 836860 8203853 ~ 8205963 (+) True G68668
TU101562 lncRNA downstream 855594 8222587 ~ 8222817 (+) True G68678
TU101678 lncRNA downstream 1135763 8502756 ~ 8506143 (+) False igf2bp2a
XR_006251751.1 lncRNA downstream 1233731 8600724 ~ 8614984 (+) True LOC122351403
XM_043248154.1 mRNA upstream 35372 7304840 ~ 7328592 (+) True ptprna
XM_043248155.1 mRNA upstream 35372 7307964 ~ 7328592 (+) False ptprna
XM_043249056.1 mRNA upstream 72422 7271362 ~ 7291542 (+) True tmem198a
XM_043249055.1 mRNA upstream 72422 7271362 ~ 7291542 (+) False tmem198a
XM_043249572.1 mRNA upstream 116366 7241336 ~ 7247598 (+) True ihha
XM_043248181.1 mRNA downstream 671 7367664 ~ 7380524 (+) True cfap65
XM_043248182.1 mRNA downstream 671 7367664 ~ 7379733 (+) False cfap65
XM_043248183.1 mRNA downstream 13825 7380818 ~ 7383202 (+) True LOC122351251
XM_043248936.1 mRNA downstream 37359 7404352 ~ 7430484 (+) True fn1a
XM_043249476.1 mRNA downstream 107005 7473998 ~ 7728791 (+) True pard3bb
TU100736 other upstream 1399084 5962967 ~ 5964880 (+) False LOC122351907
TU100723 other upstream 1478211 5883927 ~ 5885753 (+) True G68097
unassigned_transcript_1464 other upstream 1906435 5457458 ~ 5457529 (+) True trnam-cau_112
unassigned_transcript_1463 other upstream 1906701 5457191 ~ 5457263 (+) True trnar-ccu_65
unassigned_transcript_1462 other upstream 1907121 5456772 ~ 5456843 (+) True trnam-cau_111
TU101608 other downstream 974305 8341298 ~ 8342679 (+) False si:ch211-167j6.3
TU101615 other downstream 1064152 8431145 ~ 8433483 (+) False sumo3b
TU101764 other downstream 1497656 8864649 ~ 8865897 (+) False cryba2b
XR_006251841.1 other downstream 1775599 9142592 ~ 9149666 (+) False si:ch1073-416j23.1
XR_006251842.1 other downstream 1775599 9142592 ~ 9149661 (+) False si:ch1073-416j23.1

Expression Profile