RNA id: XM_043249406.1


Basic Information

Item Value
RNA id XM_043249406.1
length 2088
RNA type mRNA
GC content 0.48
exon number 9
gene id idh1
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 11089670 ~ 11096681 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GATTGAAGAAGTACATGCATGAGCAGATCTGGAGAGAGCCTATGCCATCGGCTCAGCTGATAGGAAACAACGCCTTCCAAGACTAGTCCAAAAGCCTTCAAGCTCCACATCAACCACCCGATATCTTTCCATTTACTCCAGTACAAGCTCAAAAGAAAAGGCTCCAAAATGTCCCAGAAGATCAAAGCGGGTTCTGTGGTGGAGATGCAGGGAGATGAGATGACCAGAGTAATATGGGAGCTCATAAAAGAGAAACTCATTTTTCCATATCTGGAGCTCGACCTACACAGCTATGACCTGGGAATGGAGAACCGCGATGCCACCGATGACAAGGTGACTGTTGAGGCGGCAGAGGCTGTGAGGCGCTTCAACGTCGGCATCAAGTGTGCCACCATCACTCCTGACGAGAAGCGCGTGGAGGAGTTCAAGCTCAAGAAGATGTGGCGCTCTCCCAACGGAACCATCCGGAACATCCTGGGTGGCACTGTGTTCAGAGAGGCTATTATCTGCAAGAACATTCCCCGCTTGGTTCCCGGCTGGATCAAGCCCATAATTATTGGCAGGCACGCACATGGAGACCAGtacAAGGCCACAGATTTCGTTGTTCCCGGTCCTGGTAAAGTGGAAATGACATACACGCCTAAAAATGGAGGAGAGCCGCTCAAGTTTGTTGTCCATGACTTTGAAGgtaCTGGTGGAGTTGCTCTGGGGATGTACAACACAGACAACTCAATCCGGGACTTTGCTCACAGCTCTCTCCAGATGGGGTTGAACAAAGGCTGGCCAGTGTACCTCAGCACCAAAAACACCATCTTGAAGAAATATGACGGCCGCTTCAAAGACATTTTCCAGGAGATCTATGACAAagAGTACAAGGCTCAGTATGATGCTAAAGGTATCTGGTATGAGCACCGGCTGATTGATGACATGGTGGCTCAGGCCATGAAGTCTGAAGGTGGGTTTATCTGGGCCTGCAAGAACTATGATGGAGATGTGCAGTCAGACTCTGTAgctcaggGTTATGGGTCACTGGGTATGATGACCAGCGTGCTCGTGTGTCCTGATGGCCGTACAGTAGAAGCTGAGGCAGCCCATGGCACCGTTACACGACACTATCGCTTTCACCAGCAGGGCAAAGAGACGTCCACCAACCCTATTGCCTCTATCTTTGCATGGACGCGAGGGCTGCTGCACCGGGCCGAGCTGGATAAGAACGCAGAGCTTCGGGTGTTTGCTGAGGCGCTGGAGGCCGTCTGCGTGGAGACCATTGAAGCCGGTTTCATGACCAAGGACCTGGCCATCTGCATCAAGGGCATGTCTAGtgttgcgCGCTCTGATTACCTCAACACTTTTGAGTTCTTGGACAAACTGGCCGAGAATCTGAAGATGAAGTTGTCAAGCCAACCCAAACTGTAAAGCTGCTGGGTGTCCACGGGGcgttcacacacacgcacactctgACACTCAACCCACCTCAAAGCGCAGACTCCGCTTCTTTAGTCTCATTTTCTGTCTTAACTGGGACCAAAGGCAGAGAAATGATTGACTTCACCACTACAGCCAGTAGGGGGAGCAATGCACTTTCAACTGGACGTCGAAAGTGCCCTTTTTAATGGAAGGAGCCGGTGTAACTttcattatgattttaaaaacaaatgacaaacattcatatattagACTGTATCACTGTTTAGGCGGTTTTATCATTGCAACGGTTGTTctcattgaaaaatatattccCTGTAGtgcataaatgtgtattttgtgcTACTGCTATCTCTCAGGTGCACGAACACCTGTTGCCTTATTGTCTGCGTGTCTAGTAGTCTTGTCTTCGGGCAGCTTCTCTGGAAGCCGTCCGAGAAACAGTGAGATTAGGTCTTAACAATGTAAATACCTGCTTTTAACTGAAACACTGGTAGTTTACACCAGTAGACATTCCTGTTCGTTCTACACTTGTATCAGTGTCTGTCaatgcattacaaatgattttccTTATATGGTTCTGTTTATGTCAGTCTGTGTGCTCACGTGATCGGGTCTTGGGTTATTTTGACATCAATAATAAATGAGACTTTTTAAGAAGAA

Function

GO:

id name namespace
GO:0006099 tricarboxylic acid cycle biological_process
GO:0006102 isocitrate metabolic process biological_process
GO:0051287 NAD binding molecular_function
GO:0004450 isocitrate dehydrogenase (NADP+) activity molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG:

id description
K00031 IDH1, IDH2, icd; isocitrate dehydrogenase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU102615 lncRNA downstream 59177 11029377 ~ 11030493 (-) True G69396
TU102576 lncRNA downstream 135685 10947044 ~ 10953985 (-) True G69362
XR_006251756.1 lncRNA downstream 142926 10930480 ~ 10946744 (-) False LOC122351427
TU102742 lncRNA upstream 262269 11358950 ~ 11365819 (-) True G69467
TU102798 lncRNA upstream 299995 11396676 ~ 11493120 (-) False LOC122351858
XR_006251827.1 lncRNA upstream 694100 11790781 ~ 11954234 (-) True LOC122351998
TU102924 lncRNA upstream 989033 12085714 ~ 12156439 (-) False G69596
TU102926 lncRNA upstream 989033 12085714 ~ 12156439 (-) True G69596
XM_043249268.1 mRNA downstream 3760 11051094 ~ 11085910 (-) True plekhm3
XM_043249269.1 mRNA downstream 3760 11059233 ~ 11085910 (-) False plekhm3
XM_043249270.1 mRNA downstream 3760 11059235 ~ 11085910 (-) False plekhm3
XM_043248825.1 mRNA downstream 44208 11041292 ~ 11045462 (-) False fzd5
XM_043248824.1 mRNA downstream 44208 11041292 ~ 11045462 (-) False fzd5
XM_043249581.1 mRNA upstream 97012 11193693 ~ 11204968 (-) True armc8
XM_043249582.1 mRNA upstream 97012 11193693 ~ 11204942 (-) False armc8
XM_043248821.1 mRNA upstream 113519 11210200 ~ 11216654 (-) True rab5b
XM_043249309.1 mRNA upstream 129275 11225956 ~ 11231688 (-) True lcmt2
XM_043249223.1 mRNA upstream 289696 11386377 ~ 11389378 (-) True tlr20.4
XR_006251823.1 other downstream 403043 10680158 ~ 10686627 (-) False mrasa
XR_006251803.1 other downstream 570213 10515272 ~ 10519457 (-) False fdx1
XR_006251819.1 other downstream 647798 10433507 ~ 10441872 (-) False trim13
TU102802 other upstream 400329 11497010 ~ 11499372 (-) False LOC122351308
XR_006251743.1 other upstream 1070310 12166991 ~ 12189656 (-) True gtdc1
TU102995 other upstream 1325748 12422429 ~ 12423446 (-) True G69650
TU103144 other upstream 1611950 12708631 ~ 12711824 (-) False LOC122351186
XR_006251867.1 other upstream 1641363 12738044 ~ 12738171 (-) True LOC122352189

Expression Profile