RNA id: XM_043249411.1


Basic Information

Item Value
RNA id XM_043249411.1
length 1477
RNA type mRNA
GC content 0.50
exon number 6
gene id fhl2a
representative False

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 6956521 ~ 6964046 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCCTGGTTTCCATCTGCTGCCTTTTATGGTAAAACAGTAGAGGGGGATTTGGTGTAGTAGTGAAGGCCGGGCCGGACGAGGGCTCAGTTAGACGCACTCGCAACCAGTTAGCAGGGGGCTGAGGAGCCAGGACAGAGCGCGTGAGGGACACCGGGGACCCCTGAGGAGGTGGCACTCAGCATCACAGGGCTCATGGGAACAGACAGCCTTGACGGGTCCACAGCTCAGACAGCCGCGCAGAAGTAAAGATGACAGAGCGTTACGACTGCCACTACTGCAAGGAGTCTCTGTTTGGGAAGAAGTATGTTCTTCGTGAGGAAAACCCTTACTGCGTGAAGTGTTACGAGAGCCTGTACTCCAACACCTGCGAGGAGTGCAAGAAACCCATCGGCTGCAACAGCAGGGATCTGTCCTACAAGGACCGTCACTGGCACGAGGACTGTTTCCACTGCTTCCAGTGCAAGCGCTCGCTGGTAGACAAGCCTTTCTCCACCAAAGACGAGCAGCTGCTGTGCACCGAGTGCTACTCGAACGAGTACTCCTCCAAATGCCATGAGTGCAAGAAGACCATCATGCCTGGCTCCAGGAAGATGGAGCATAAAGGAAACAGCTGGCACGAGACTTGCTTTACCTGCCAGCGCTGCCAGCAGCCAATTGGCACCAAGAGCTTCATCCCCAAAGACAACCATAACTACTGCGTGCCCTGCTATGAAAAGCAGTTCGCCATGCAGTGTGTTCACTGCAAGAAGCCCATTACCACCGGCGGTGTGACGTATCACGACCAGCCGTGGCACAAGGACTGTTTCCTGTGCACTGGCTGTAAGCAGCAGCTGTCTGGTCAGCGCTTCACCTCTCGGGATGACTTCGCCTACTGCCTGAACTGCTTCTGCAACTTGTACGCCAAGAAATGCGCCTCCTGCACCACCCCCATCAGTGGACTCGGAGGAAGCAAGTACATCTCCTTTGAGGAGCGCCAGTGGCACAACGACTGCTTCAACTGCAAGAGGTGCTCAGTGTCTCTGGTGGGCAGAGGTTTCCTCACCGAGAGAGATGACATCCTGTGTCCTGAGTGTGGCAAAGACATGTGAAAGCGCGCAAGAAACAATTCCAGCATGCATGACAGatcaaaatgttaaaaccaGCTCATTGGAAAAGCATGAAACGGTGTGAGCAATGAATACATTTAGGTACTCCATAGAAACGTAGTAAAAATTGTTGTAGCAGAGATTATAATAGCGTATGTATAGCAAAAGGCAGAGCGTCTTTATTTCAGCTTGAAGAGGAAAGAACCGGTTCTAAAGATCAAACTTTAAATGTGAGGATAATAACCTTTGTTCTCTCTTTCAAATGACTAACCGGCTCTCTGAAGTGTTGCATAATCCATGTCTTAACTTGGGGCTTTTTGTGTATCTAACAGTTACGGatgaatactaaataaatacagttaatgCAATACCAATAAAGCTTATTAAAACAA

Function

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101009 lncRNA upstream 14679 6907738 ~ 6943321 (+) True G68296
TU100960 lncRNA upstream 249807 6707841 ~ 6708193 (+) True G68254
TU100958 lncRNA upstream 263089 6694678 ~ 6694911 (+) True G68252
TU100957 lncRNA upstream 266160 6691342 ~ 6691840 (+) True G68251
TU100954 lncRNA upstream 273504 6682624 ~ 6684496 (+) True G68248
TU101024 lncRNA downstream 27787 6991833 ~ 6995856 (+) True G68309
TU101167 lncRNA downstream 235223 7199269 ~ 7199817 (+) True G68405
TU101162 lncRNA downstream 292634 7256680 ~ 7259394 (+) True G68401
TU101189 lncRNA downstream 298495 7262541 ~ 7263713 (+) True G68424
TU101158 lncRNA downstream 316721 7280767 ~ 7298285 (+) True G68397
XM_043248631.1 mRNA upstream 77972 6842578 ~ 6880028 (+) True uxs1
XM_043248733.1 mRNA upstream 144978 6763869 ~ 6813022 (+) True st6gal2a
XM_043248736.1 mRNA upstream 144978 6774481 ~ 6813022 (+) False st6gal2a
XM_043248735.1 mRNA upstream 144978 6782931 ~ 6813022 (+) False st6gal2a
XM_043249763.1 mRNA upstream 240203 6710206 ~ 6717797 (+) True pdzk1
XM_043248363.1 mRNA downstream 136383 7100429 ~ 7106362 (+) True mfsd9
XM_043248355.1 mRNA downstream 153500 7117546 ~ 7142648 (+) True inpp4aa
XM_043248356.1 mRNA downstream 153500 7117546 ~ 7142648 (+) False inpp4aa
XM_043248357.1 mRNA downstream 153502 7117548 ~ 7142648 (+) False inpp4aa
XM_043248358.1 mRNA downstream 153503 7117549 ~ 7142648 (+) False inpp4aa
TU100736 other upstream 993120 5962967 ~ 5964880 (+) False LOC122351907
TU100723 other upstream 1072247 5883927 ~ 5885753 (+) True G68097
unassigned_transcript_1464 other upstream 1500471 5457458 ~ 5457529 (+) True trnam-cau_112
unassigned_transcript_1463 other upstream 1500737 5457191 ~ 5457263 (+) True trnar-ccu_65
unassigned_transcript_1462 other upstream 1501157 5456772 ~ 5456843 (+) True trnam-cau_111
TU101608 other downstream 1377252 8341298 ~ 8342679 (+) False si:ch211-167j6.3
TU101615 other downstream 1467099 8431145 ~ 8433483 (+) False sumo3b
TU101764 other downstream 1900603 8864649 ~ 8865897 (+) False cryba2b
XR_006251841.1 other downstream 2178546 9142592 ~ 9149666 (+) False si:ch1073-416j23.1
XR_006251842.1 other downstream 2178546 9142592 ~ 9149661 (+) False si:ch1073-416j23.1

Expression Profile