RNA id: XM_043249415.1


Basic Information

Item Value
RNA id XM_043249415.1
length 1500
RNA type mRNA
GC content 0.51
exon number 4
gene id c9h2orf49
representative False

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 6965229 ~ 6969207 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTTCTTCCTGCGCTCTCCGGAAATAGATGAGAAACATGGCGTCGCGCAGGACGGACAGAACGGAAGACGCCTCATCCAAAGCTGGACATGTCTCCAAACTCGACCTCCTGCTCCATCCCGAGCTTCTTTCTCACGAGTTCATTCAGCTCGTGTTACGCGAGAGGAAGATAGCAGTGGGCGATGAAGAGGACCGCGAGCGGCTCACAGATCTGTACCTGCGGCATGTCGTTCCTCTCCCGCAGAGGGATCTGCCCGGCAGCCGCTGGGGGAGGAGGATGGAGAGGAGCCGAGCGCGCCAGAGCAACACCGGGGCGTACAGTTCAAGCAGTGACTCTGGCAGGAAGAGGCCGCTGATAGTGTTTGACGGCAGCTCTACTAACACTGGCGGTGTAAAGCTGAAGAAATCCGACCCTTCACCGGCACCTGTCACCACAGACCGACTGAAGCCCCCGGTTTCCAGCATCAGTCTCTCCAACCCCATACGCAAACTCTCTGGGACCTCTACGAACTCGTCCTCAAACTCCTCTAACAGGACCCCAGTGTCTTCGCCGGGGGACAGTCCCAAGAGCCCCTGTAATCACTCCAAAACGGCCAACTCCTCGCTGCACTCAAACAACACCACGTCTAAACTAAAGCGCGCGTCCCCCGGCGACGGAGAACCCGACGCTAGTGACATCAAGTCGCCCGATACAAAGAAAAAGATTCAACATATCACATGGCCGTAACCTGCAGTCGTCTGGGATGGACGGTTAACGGCGCCGACGTCGTCCGCTGGGTCTCTGAGGCGAAGATAGACGCGTGATGAGGCAGGAGAATTAGAAAGATGGGTTTACACACCGGCCTCAGGAAAGGTGACGTGAAATGTGACCCTCTGGTTTATTTCACACTAGGAAACGCCTCGGCTTTCGACTTGATGTGCGGCGAAGGAACTGAGACATTCCTAGCAGTTTTATGTTGGACTGGTcggtttttcacttttttagcAATACTTTATAGAGTAGTTTTCTTGCGATGGGCAAACGTCCCGTTGTGAGTGGATCACGTTGGCGAATCGAACCCACTGGGAGGAACTGGATGGAGAACGGACGAGCTTTCCAGTGCTCTGCGGGGGTTTTTTTACCGGTATAGAAGTATTGGCAGTAACCGGATGTGCTTTGACTGATTGGCGTTTTGAAGAAATCTCTTATTTCTCCAAGAAAATGCTTGCATTGATCAGCTTTCTAGATGGGGATAGGCCTGTTGAAGTACGTTGGTAATTATCAGGTAAACCCCTTGGCCGGTTTTGTATTTCTAGCCCCCCCCAACGGGCCAAAATGAAGTTGCGATGTTTGTTGCACCATGCGTTGTGTTTAAGTGAAAAAGCGATATAAAGGGTGTTTCACGTGTTCAGTGTTTTAGTGGTGGTCTTTTCAAGACATTATGAATTGAGTTTTTATTGAACTGCATGGAATGTTCCTCAGTGACAATAAGCCTGATCTAATAAATGGCTGAGAGCAATGA

Function

GO:

id name namespace
GO:0048598 embryonic morphogenesis biological_process
GO:0072669 tRNA-splicing ligase complex cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251826.1 lncRNA downstream 69832 6892652 ~ 6895397 (-) True LOC122351994
TU101086 lncRNA downstream 82253 6882585 ~ 6882976 (-) True G68357
TU101051 lncRNA downstream 152214 6809848 ~ 6813015 (-) True G68328
TU101058 lncRNA downstream 170854 6793402 ~ 6794375 (-) True G68333
XR_006251776.1 lncRNA downstream 188255 6775286 ~ 6776974 (-) True LOC122351577
XR_006251860.1 lncRNA upstream 13471 6982678 ~ 7035361 (-) True LOC122352164
TU101108 lncRNA upstream 177233 7146440 ~ 7153954 (-) True LOC122351350
TU101111 lncRNA upstream 177233 7146440 ~ 7153954 (-) False LOC122351350
TU101258 lncRNA upstream 358622 7327829 ~ 7341494 (-) True G68473
TU101275 lncRNA upstream 412083 7381290 ~ 7381508 (-) True G68489
XM_043249561.1 mRNA downstream 21787 6896477 ~ 6943442 (-) False nck2a
XM_043249562.1 mRNA downstream 21787 6896477 ~ 6943442 (-) True nck2a
XM_043249559.1 mRNA downstream 21790 6896477 ~ 6943439 (-) False nck2a
XM_043249563.1 mRNA downstream 40178 6896477 ~ 6925051 (-) False nck2a
XM_043249722.1 mRNA downstream 76855 6883488 ~ 6888374 (-) True ecrg4a
XM_043248245.1 mRNA upstream 610 6969817 ~ 6974908 (-) True gpr45
XM_043249731.1 mRNA upstream 18516 6987723 ~ 6990768 (-) True pou3f3a
XM_043249730.1 mRNA upstream 18516 6987723 ~ 6990767 (-) False pou3f3a
XM_043248370.1 mRNA upstream 124696 7093903 ~ 7097792 (-) True tmem182a
XM_043248360.1 mRNA upstream 137352 7106559 ~ 7117477 (-) True slc9a2
TU100887 other downstream 704160 6246900 ~ 6261069 (-) True G68188
TU100850 other downstream 865346 6099347 ~ 6099883 (-) False LOC122351979
TU100782 other downstream 921304 6043275 ~ 6043925 (-) True G68124
TU100767 other downstream 1042409 5919757 ~ 5922820 (-) False LOC122351463
XR_006251815.1 other downstream 1595640 5349955 ~ 5369589 (-) False LOC122351925
TU101110 other upstream 101778 7070985 ~ 7148620 (-) False LOC122351350
TU101496 other upstream 1045242 8014449 ~ 8018105 (-) False LOC122351623
XR_006251804.1 other upstream 1109929 8079136 ~ 8094847 (-) False als2a
unassigned_transcript_1465 other upstream 1371736 8340943 ~ 8341015 (-) True trnak-uuu_106
TU102057 other upstream 2938981 9908188 ~ 9910178 (-) True LOC122351483

Expression Profile