RNA id: XR_006251823.1


Basic Information

Item Value
RNA id XR_006251823.1
length 2246
RNA type transcript
GC content 0.41
exon number 7
gene id mrasa
representative False

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 10680158 ~ 10686627 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTTCCGGATGCGTAATGCTGCTAGTTAAACAAACGATAAAAGCACTGTAAAAGTTGTGACAAGAAACACATCCACCCCTTCCAAACCATTCTATTTATAGCATCGGCAGTTGCGATGTGAAGATTGTTACACTGTAATTTCATAAGGGCGGAggaaaatgtcttaatttttttcatttaagctGAAGGGCAGACCACGTTTTGTTAAGAGCCTGACGATTTTTCAGGGATGTCGAGGAGGAGTCTGGATTTTTTGCACACTTGGTAAATCAACCAACCCATGACTGGTGTAGCTGTTATCATGGCAACCAGTGCAGTCCCTAGCGACAACCTCCCAACGTATAAATTGGTGGTTGTGGGAGATGGAGGTGTGGGAAAGAGCGCTCTTACCATCCAGTTTTTCCAAAAGATTTTTGTGCCAGATTACGACCCTACTATCGAAGACTCCTACTTGAAACACACAGAGATCGATGGCCAGTGGGCTATTTTAGATGTTTTAGACACGGCTGGTCAAGAGGAATTCAGCGCCATGCGAGAGCAGTACATGAGGACTGGTGACGGTTTCCTCATTGTGTTCTCCGTGACAGACAAGGCCAGTTTTGAACACGTCGACCGCTTTCACCAGCTCATACTACGAGTCAAAGACCGGGAATCCTTCCCTATGGTGTTGGTGGCTAACAAAGTGGACCTGGTGCATCTGAGGAAAGTGACAAATGAACAGGGCTGTGAGATGGCCGCCAAACACAATATTACTTACATTGAAACAAGTGCCAAGGATCCTCCAATGAATGTGGACAGAGCCTTTCACGAATTAGTCAGAGTTATCAGACAGCAAATTCCTGAGCGGAgtctaaaaaagaagaagaagacaaagTGGCGTGGAGACAGAGCCATGAGTTCCCACAAGCTTCACTGTGTGATATTGTGACTACCTCTCATCTTCAGCGTTTGGCAACATAAACTGCCAGAGAGGACTGACTAGAGATCTGCACTAATCAGAGGACCACAGACTTTATCAAAAGAACTGGCATGAAGTCAGAccatcacttcctgtctcagGGAAGCATATTAGCCTTGATGACCGTAAGAGGCTTCTCGCGATTTCGACATTTTAAACTCTAGTGCaccttttgtttttctacaTATGCTGTGATTCAGTGTTGCCAAGAGTAAAAAGTGAAAAGTATGACTGAGCTGTACAGATGGGTTATATTTTATGCTTGATCAACTTTCAGTATTTATCAATTTGTCAAACCTCCTGTGCCTCAGTTTCCTCTGTGTCGGACCAATTTATGTGCCTGTGCCAGTGTGATAATAATCAATTTCTAACCACTGGTTCCTCTGACTCTTCCCAAAGGACAAAGAAGCTGTTAGAACTAGAAGCACGGGAGCCCTTAGCCAAATGTTATGTTGTAATGTTCAATAACTCTCCGCTCgacacataaataaatcagcGAGGAGCCGCATCAAACCTTGCTGTTATCTGTTGAATGAGGAGGTCTTGGttgatttagttatttttgcgAAACGTTAGGTCTAATGAGCTAGAGAGTGCAACATGTCTGGAAGCTCTGTAAGAATTAGTTTAATGCTGACAGAGATTCATTTCCACGGTGTATTAGACGCTCCAAGTAAAATCACGGCATTCTAACAATGCATTTGATTTTGGTCTCCTACAaatattgtaactttttttttttcttttggttggTGAATTACATAAACACTTCACAATTAGAATATAAACCGGTGTAGCAGTTTGAGATCAGAGATCATAGAGATCATATCAATCCAATTCCATCTTGCTGTATTATACGATATAATAGATCTAGACTTTGTTGAGAATTCATCATCGTTTACATGCACTGCTAGTAAATGCGGAAGGGAGCTGTTTTGCATTCAGAGGTCATGAAGGGCctaatgggtttttttctgctctgttgctgttttttttttaatgatgaattaatGCAAAGATTGGTGTTGTGTTACATGTCAGCTGTTTTACAATGCTAATGTTTATTTAAGTTACATCTCAATCATAATGAACATTTGTTGTCAGGTTGGTTATTGCAGTGCAACAAAcgctttgttttctgtttttttcaccATGATAAGattgttttaatatgcatgtCATTGTGATAAAGCTGCTCTGCTTTGTTTCAAGTGACTCCGAAGTAAATGACTTGCCAAGTTGCCTTGGGTGGTTTATGatgggtttttaaataaaagattctTCATATA

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0016020 membrane cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU102406 lncRNA downstream 233391 10445277 ~ 10446767 (-) True G69231
TU102394 lncRNA downstream 235517 10444293 ~ 10444641 (-) True G69228
TU102379 lncRNA downstream 253693 10426227 ~ 10426465 (-) True G69223
XR_006251782.1 lncRNA downstream 416711 10253933 ~ 10263447 (-) True LOC122351639
TU102286 lncRNA downstream 437946 10173936 ~ 10242212 (-) False G69157
TU102549 lncRNA upstream 150885 10837512 ~ 10844040 (-) True G69346
XR_006251830.1 lncRNA upstream 163196 10849823 ~ 10908594 (-) False LOC122352018
TU102556 lncRNA upstream 163196 10849823 ~ 10891473 (-) False LOC122352018
XR_006251829.1 lncRNA upstream 197028 10883655 ~ 10908594 (-) True LOC122352018
XR_006251756.1 lncRNA upstream 243853 10930480 ~ 10946744 (-) False LOC122351427
XM_043248816.1 mRNA downstream 70767 10606194 ~ 10609391 (-) True LOC122351611
XM_043248809.1 mRNA downstream 121579 10531653 ~ 10558579 (-) True uggt2
XM_043248811.1 mRNA downstream 123398 10531653 ~ 10556760 (-) False uggt2
XM_043248812.1 mRNA downstream 123398 10531653 ~ 10556760 (-) False uggt2
XM_043248807.1 mRNA downstream 123398 10531653 ~ 10556760 (-) False uggt2
XM_043249489.1 mRNA upstream 143287 10829914 ~ 10833116 (-) True zgc:162780
XM_043249490.1 mRNA upstream 146635 10833262 ~ 10835970 (-) True zgc:162396
XM_043248825.1 mRNA upstream 354665 11041292 ~ 11045462 (-) False fzd5
XM_043248824.1 mRNA upstream 354665 11041292 ~ 11045462 (-) False fzd5
XM_043248822.1 mRNA upstream 354665 11041292 ~ 11045462 (-) True fzd5
XR_006251803.1 other downstream 160701 10515272 ~ 10519457 (-) False fdx1
XR_006251819.1 other downstream 238286 10433507 ~ 10441872 (-) False trim13
XR_006251818.1 other downstream 238286 10433507 ~ 10441872 (-) False trim13
XR_006251820.1 other downstream 238286 10433507 ~ 10441872 (-) True trim13
TU102057 other downstream 769980 9908188 ~ 9910178 (-) True LOC122351483
TU102802 other upstream 810383 11497010 ~ 11499372 (-) False LOC122351308
XR_006251743.1 other upstream 1480364 12166991 ~ 12189656 (-) True gtdc1
TU102995 other upstream 1735802 12422429 ~ 12423446 (-) True G69650
TU103144 other upstream 2022004 12708631 ~ 12711824 (-) False LOC122351186
XR_006251867.1 other upstream 2051417 12738044 ~ 12738171 (-) True LOC122352189

Expression Profile