RNA id: XM_043249420.1


Basic Information

Item Value
RNA id XM_043249420.1
length 2654
RNA type mRNA
GC content 0.50
exon number 3
gene id col8a1a
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 10239297 ~ 10247492 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTCAGTTGGTCAAGGTGTGTGTTTCGGGGTCTTTCTGAGTGTGAGCTTGACAATCTTTGAGATTATCTCCTCCTACGGCCGTTCAAAGGAAAggcCATGGACATGGCTTCTTTCCTAGTAGCTTTGGTGCATTTGGCTCTGTTACCATCAGCGTTGGGAGGTGCATATTATGGACACAAACCACATCCTCAACAACATCAACCCTTACCACAGATGCCTCACATGGGCATGGGAAAGGATATGTCACACATGCCATATCCACATTACAGAAAAGACCTTCCGATGCACCTAAACAAAGGCAAAGATATCAAAGGTGAGACAATTCCCAGAGGTGAGCAGGGTGTTCAAGGAGAGATTGGACCGCAAGGGCCTCCTGGTTCACCTGGGCCCCAAGGACCTCCTGGGCCTCAAGGTATTGGTATTCAAGGCCCTCTTGGAAAGCCAGGACCTCCTGGCCCTCCAGGATTTCCTGGAGTTGGTAAACCAGGAATGCCAGGTATGCCCGGGAAGCCAGGGGGTATTGGGCAGCCTGGACAGCAAGGTGAACAGGGACCCAGAGGTGAAGAGGGACAACCAGGCATGATTGGGCCATCTGGCCCTCCTGGACCCCCCGGCCTGCCAGGAATAGGAAAGCCTGGTGGACAAGGATTACCAGGACAGCCAGGGGCAAAGGGAGAGCCAGGACATAAAGGTTTTCCTGGTCTCCCAGGGTTACCTGGCCCTAAAGGAGACAGAGGAATTGGGCAACAAGGCCCACAAGGGCCAAAAGGTCCGATTGGGCCACCTGGCCCCCCAGGGCAAGCAGGATTACCGGGGATTGGTAAGACTGGTCTTCCTGGTGTAGCAGGTCCCCCTGGTATACCAGGAAAACCTGGAGATCCTGGGGAGCCAGGTCCAGAGGGTCCGCCTGGTGGACAAGGCCTACAAGGACCACAGGGAACCCCTGGCATTGGAGTTCCAGGAGAAAAAGGATTACCAGGACAGCCAGGTACACCCGGCCACAAAGGATTACAAGGACCACCAGGGTTGCCTGGGAAACCTGGATTACCTGGATTTGGCAAACCTGGATACCCTGGCCCAAAGGGTGACAAAGGGATGGGAGGGCTTCCTGGTCCTCAGGGACCAAAAGGAGACAAAGGTTATGCTGGTCAACCAGGCATGATGGGTCCCCCCGGCCAAACCGGTCCTCTGGGGCCTCCAGGACCAATGGGGGCACCAGGAGGAATTGGTTCCCCAGGTCTAAAAGGAGAGGGAGGAGCAGAAGGAGCTAAGGGAGATCCTGGACCAATGGGGCAACCAGGCCCTCCTGGATTTCCTGGTCAACCAGGCCTCCAAGGTGAAGATGGAGAACCTGGGCTAAGAGGACCACCAGGATCCATAGGTCCTAAAGGAGAAGGAGGAAGCAGAGGTCTACCTGGTACACCCGGTCCATCAGGCTTGCCTGGTCTTAAAGGAGAACCTGGTCAGCCTGGCCTCGAAGGACCACAGGGTCCTAAAGGTATTCCAGGACTTGCAGGTCCAGGAGGACCAATTGGGCCTCCTGGACCTTCTGGGCCAAAGGGAGAAGCAGGTTCACCAGGTCAAGCTGGTCCACCCGGTGAAGGCATTGCTGGAATCCCTGGTTCTGTTGGTCCAGCAGGTCCACCTGGCCCTAATGGATCCCCAGGTCAGCGAGGTCTCCCAGGTCCACCGGGTCCTCCTGGACCTCCAGGACCCCCACCTTCTCCAGACCTGATGGGTGTTCTCCCTGAGATGGGCCCTGCCATAGATGGTATAAAAACTGGTGGGTACAAGAAAGGGAAGTATGCAGGTGGGGGTGACATTATGGGTGCCAATGGTCTAGAGATGCCTGCTTTCACTGCCCAGCTGACCACACCATTCCCTCCAGTTGGCACTCCGATTGTGCTTGACAAATTGCTGTACAATGGGCGTCAGAATTACAACCCTCAGACCGGTGTGTTCACCTGTGAACTCCCAGGCATCTACTATTTTGCCTATCATGTGCATTGCAAGGGTGCAAATGTATGGGTTGGGCTCTACAGGAATGGGGAGCCACTTATGTATACATATGATGAGTACAAGAAGGGATACCTGGATCAAGCATCTGGGAGTGCTGTGATTCCATTACAACCAGGAGACACAGTTTATTTACAGTTACCATCTGACCAGGCAGCTGGATTTTATGCAGGACAGTATGTCCACTCCTCATTCTCTGGCTTTTTACTGTACCCAATGTAGAGCGCAAGAATAATTGAAAgaattttaaagacaaaaagggGAAGAATGAactgacattaaaatgtttgacttatttaaaatgtccaTATTTTCACAGGAAAGAAGAAGACTTATAGAAACAGGTCCTTTAAACTCAACCTAACAATATAAATCTACAGACTGTATGAGTATATGCAATGATAATTACAGTATACTGTGTCTGTAAAGATACAACTTGCCCAAAGACTCACAGATTGTAGTAAGAATATTTAATTCCATACcacaattaaacatatttttgaaaagattgTTTTTGTAacgtatttatgtatttgtttaattggtGGTATCCAACATGAGTatacatgctttaaaatgtttagaacAGTATTTTTAATGACGTTAATAACTAATGTATTCGCTTTGAATGAGATGAG

Function

GO:

id name namespace
GO:0014028 notochord formation biological_process
GO:0005581 collagen trimer cellular_component

KEGG:

id description
K23455 COL8A; collagen type VIII alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU102283 lncRNA downstream 64439 10171769 ~ 10174858 (-) True G69157
TU102285 lncRNA downstream 66312 10117793 ~ 10172985 (-) False G69157
TU102297 lncRNA downstream 100538 10136649 ~ 10138759 (-) True G69168
TU102250 lncRNA downstream 129054 10108975 ~ 10110243 (-) True G69136
TU102268 lncRNA downstream 152275 10085433 ~ 10087022 (-) True G69147
XR_006251782.1 lncRNA upstream 6441 10253933 ~ 10263447 (-) True LOC122351639
TU102379 lncRNA upstream 178735 10426227 ~ 10426465 (-) True G69223
TU102394 lncRNA upstream 196801 10444293 ~ 10444641 (-) True G69228
TU102406 lncRNA upstream 197785 10445277 ~ 10446767 (-) True G69231
TU102549 lncRNA upstream 590020 10837512 ~ 10844040 (-) True G69346
XM_043249349.1 mRNA downstream 1333 10236298 ~ 10237964 (-) True jagn1a
XM_043248805.1 mRNA downstream 3626 10226387 ~ 10235671 (-) True tfg
XM_043248804.1 mRNA downstream 3633 10226387 ~ 10235664 (-) False tfg
XM_043249095.1 mRNA downstream 79291 10149875 ~ 10160006 (-) True rpgra
XM_043249105.1 mRNA downstream 90078 10140293 ~ 10149219 (-) False srpx
XM_043248859.1 mRNA upstream 31366 10278858 ~ 10284622 (-) True tmem30c
XM_043248140.1 mRNA upstream 37534 10285026 ~ 10289515 (-) True cmss1
XM_043248304.1 mRNA upstream 161267 10408759 ~ 10411514 (-) True LOC122351326
XM_043249378.1 mRNA upstream 168764 10416256 ~ 10419386 (-) False rnaseh2b
XM_043249377.1 mRNA upstream 168764 10416256 ~ 10419344 (-) True rnaseh2b
TU102057 other downstream 329119 9908188 ~ 9910178 (-) True LOC122351483
unassigned_transcript_1465 other downstream 1898282 8340943 ~ 8341015 (-) True trnak-uuu_106
XR_006251804.1 other downstream 2144450 8079136 ~ 8094847 (-) False als2a
TU101496 other downstream 2221192 8014449 ~ 8018105 (-) False LOC122351623
TU101110 other downstream 3090677 7070985 ~ 7148620 (-) False LOC122351350
XR_006251819.1 other upstream 186015 10433507 ~ 10441872 (-) False trim13
XR_006251818.1 other upstream 186015 10433507 ~ 10441872 (-) False trim13
XR_006251820.1 other upstream 186015 10433507 ~ 10441872 (-) True trim13
XR_006251803.1 other upstream 267780 10515272 ~ 10519457 (-) False fdx1
XR_006251823.1 other upstream 432666 10680158 ~ 10686627 (-) False mrasa

Expression Profile