RNA id: XM_043249427.1


Basic Information

Item Value
RNA id XM_043249427.1
length 7172
RNA type mRNA
GC content 0.48
exon number 14
gene id satb2
representative False

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 15834539 ~ 15876097 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTCCTCTCTCGGCTCTCCGTCAGTCCGCGCGCCGCGCAGGGGAGAGATTGAAAGTGACACGCTCACATTGTTGCTCTTGAGATTTTACGCCGCCGTTAATAGGTAACGTCCGCGTCGCGCAAAGCAAGATACCTGACATCTGTTTTTAGCTCGGGTTCCCTTTGTGCGCGCGCGGCAGCGTAGATGGACgttttttagattttgatgCTCTCTTTGCGCCCGCCGCTGAGGTTCTCGGCTCTGCCACGGACACTCGTGACTCAAACTCGCGGTGAACGCTCGGAGTCTCTCAGTTCCAGTGGCTCGGTCGCAGCGCGCAGCGCACGGAGCCCAAGTGTCCAACACCGAACCCACCGAACTCGACCGTGTTCAGTCCTCCGCGAGGCAGCGACAAGCCCAGCCCTGGATTCAATACTTTTAATCAATGGACAGAGCCCTCTCAACGGCCAACCGAGGTACCGACACGCCATAAGCAGTCCTTATCCTCTGGCTGGTGTTCCCCCTGTAGTGTGGAGGGGGATGGAGCGTGGCGGAGGAGAGAGTCCTCGTTTACGGGACAGCCCAGAGCGACGTGGGAGCAGCAGTCCTGATATCGGCGGCCCCCCACCAAAGTTGGGCCGCCTGGAGCTCAATGGCAGTCCCACAGGTCATCGCAGTCGCCACAATGGGGCCCCACAGAGACCTCTCGGTGGTCTGATGATTCCAGTCTTCTGCGTGGTGGAGCAGCTGGATGGAGGGATGATATCGGATGGAGAGAGCCGGGAGGAACATGCCGAGTTCGTGTTGGTCAGGAAAGACATCCTCTTCACTCAGCTGGTTGAGACTGCACTTCTCGCCCTTGGATACTCCCACAGTTCTGCAGCCCAGGCACACGGCATCATTAAGGTGGGCCGCTGGAACCCCCTGCCCATCCATTACCTGACAGATGCTCCAGAGGCAACAGTTGCTGATATGTTGCTGGACGTTTATCACATGGTCACGCTACGCATCCAGCTACAGAGCTTTGCTAAACTGGAGGACCTTCCGTCAGAGCAGTGGAATCACGCTACAGTACGCAACGCCCTCAAAGAGCTGCTCAAAGAGATGAACCAGAGCACGCTGGCCAAAGAATGTCCGCTCTCTCAGAGTATGATCTCCTCGATAGTGAATAGCTCCTACTATGCTAACGTCTCAACAGCCAAGTGCCAAGAATTTGGTCGCTGGTACaagaagtataaaaaaattaaaggGGACTATTTGTGGCAAGGACGGGAGAGCTCGGAAATCAAGGTTGAAAGGGACAGTCTCACTGACTTCTGTGTATTAGCCCAGCGTCCGCCCCCTCACCTTGCTGGTCTGGCGCAGCTCGGTCCGTTGAACAGTGGCGGGTCTCTGGTGAAAGGTGGCTCTGGAGAACCTCAGAATTCAGCCCAGTCTCAGCCTCCATCTCAAGGGCAGCCCCAAGCTCCATCATCTCACGGACAGCTCCATCACAGTCCTCCGCTAAGGGCTCAGGTGCCTCCTCCACCTCCGCCAGCCGCGCTGCAACCTCTTTTGGCACCCggaggactcctctcaccccaGCTCAGTCCACAGCTGGTGAGGCAGCAGTTAGCCATGGCTCATCTTATAAACCAGCAGCTGGCCGTCAGCCGCCTCCTGCATCAGCACCCACAGGCTCTCAACCAGCAGTTTCTCAATCACCCACCCATCCCGCGGCCTAGCAAGTCCGGTGGTCCTGGAGAGCCCGGGTCCAACCCCTCGGCTGCGGAAGTTTCCTCTGATATCTACCAGCAGGTGCGAGATGAGCTGAAAAGAGCCAGTGTCTCACAGGCAGTGTTCGCTCGAGTTGCCTTCAACCGTACACAGGGCCTGTTATCAGAGATCTTGCGAAAAGAGGAGGACCCACGCTCAGCCTCTCAATCCTTGCTAGTAAACCTCAAAGCCATGCAGAACTTCCTAAACTTACCTGAGAGCGAGAGGGACCGAATTTACCAGGAAGAGCGGGAGCGCAGCATGAACCCTCCTGTGAGTCTGCCCCCAAGCACAAACCCCAACCCTGGTGGCGCCCGCCTTTCTCAGAAAGTGTGGGAGCGCAGCATCGATGAACAGTTAACCCCTGACGCGTGGGCATCTATTTGGaagaataaaaccaaaataacaaacTCGTCCAAAACTTCTGGTCCGAACCCTGACCTTCCTCTGAAACTTGAGCCGCTGGTTAACATCACTTCAGCCATTTATGACGAAATCCAGCAGGAGATGAAACGGGCAAAAGTGTCTCAGGCCCTTTTCGCTAAGGTGGCAGCCAATAAGAGCCAAGGATGGCTGTGTGAGCTGCTTCGCTGGAAAGAGAGTCCCAGCCCGGAGAACAGGACTCTATGGGAGAACCTGTGTACCATCCGGAGGTTTTTGAGCCTTCCACAAACAGACAGGGATCTGGTGTATGAGGAGGAGTCCCGCCATCACCACAGTGAACGGCTGCACACTGTACTGCATTTGCCCACTGACCCTCAGGCACTTCACAGACAACCCATGCAGCCACTAAAGGACCACTCTCCCATCCGAGAAGAACCTGTTCCCAGTTCTGGAGCCGAAGATAACCCCCAGGCTATTGCTGGTTCAGGCAACAGTGGAGGAGTTGGCAACGTCACAAAAAAACCTCGCTCCCGCACCAAGATCTCTCTGGAGGCTCTAGGCATCTTACAGAGCTTCATTCAAGATGTGGGCCTCTACCCTGACCAGGAAGCAATCCACACCCTTTCAGCTCAACTAGATCTGCCCAAACACACCATTGTTAAGTTCTTCCAGAACCAGCGTTATCACGTGAAGCATCATGGCCGACTGAAAGAGCTAGGATCTGAGGGAGGCGGTGTCGACGTAGCCGAATATCGTGATGAGGAGCTGCTCTCCAGTTCGGAGGATGCGGAATCCAGTGAAGATGGCCACGAGGAGATCTACAGTGGGCATGAAAGCGCACCAGCTGGAGCAGTCAACTCAATCTCAACTCCAGCTGTTTCTTCAGGCCAGGATGAGAATAAAGACAAAGGCCTGCCTCTGGGATCAGCCAGACCCAGCTCCCTGCCCCCTTGTGGTTCATCTCCAAGTCCTCGAGATCAAGCAGAATATCAGAGATAAAACAGTCTCAACAAAGACTATACTGTCAGTGGGGAAAGGCAAGGAGTGAGCACTTATAACTATTCTGTAGTGGAGGAGAGACAGCTTAGAAACTTACTGACAAAGACACAGTGTCCTCTGAGGACCTGTAGAAGGCAAACCAAACTAGACAAGATCTGCATTTTGATTAAGGTGATATGGTGTAGAAAGATGAGTTGTGATCTACTCCCGGCCTCATACCTCACAAGTTACTTACAGGGATAGCATGGTAAGGAAGCAGTCCCTATGGCGTGCTACAAAGGAGGGAATTTGGTTGGCTGGGAAGCATTCATTTTCTAGATGTAACTCATCAATTTTAGGCAAGATAGCTGCCACAACCCCAACATGTCACAAGCATTCAAATGTGCATGCTAAGAATGTCAAGAAGGCCAGTCTTTCACTAAGTGTTTCATTTCTAATCTGAGAGCAGGGGGTCTCTCTCAAAATACCACTATCCATGCCCCCTCTTTATCTCTGCAGGGCTAAAATGGCAGGGACAGTGCTTTAGATGAGCCAATGATCTCCTATGGGACACCAACAACTTCACTCCTGTCCAATCAGGGAGCCTAGTGGGCGGCTGTAGCTGTCCTCATCTTCCCCTCCATGATGGGGCATTCTGGTGGTCGCCAACTGAGGGCTGTGCTTGACTGCTAAAGCGGTTGGTTGGGTTGGAGGTACAGATGAGATCTTGGGTGTACACATAAGCCCAGCCCAGGAACCCTACTATAAACACATGTGGTGTGCTGAAAGGTCCACAGTTAGCCCAGTGGCGCTTTTGAAGACCACGCCATCCTTCCCACAACCAGCCACAAGCGTCATTCCAAGCAGTCCCACATGGTTCAAGAAATCACTCTTTTACCCCCACCACCCATGCACACCCAATACAGACTGTGCACAACATCCCAATCCATCAGTCCTGTCCAGTGATTGAAGGTTTGCTTTATACAGATATGTTTAGATTGTAGGTTTCATTGCAGGTTTGCTCTCTCTACACTTAAAAGACAGTGAGAATAAAACATAATTGGCGGGAGGACTGACTGCTATGGACAGAAGGACACTGGTGAGGGTGCAGTCTAATTGCATCTGCCTCTGGCCTAGTGGAGAAGAGCAAAGCATTTCCAGCAACTGCGCTTGCGTGGAAGTGCGGTAGTTCTTCTCTCTTCCGTCACCTCCCACAGCTTTCTCTTTTACTGACTGATGCCCACAATGTCCTGATTTGACCACACTCACCCACACCCAACTCCACAGCACTATTTATTGCTATCTTCACCctcaattattattgttgttattgttattattgttattatggttgttcttgctgttatttttagttCTATTTTCATGGTCTAATATCAGCTTTTGGCTTGCAGCAGATGTTTTGGTAATGAGAGACgttgtgaaagaaagaaacactgcCAAAACAGAGAGGAACGAATTGGAAGCAGTTACTGAAGTTACTGAGTCAATCATGTGATATGTACTGCCAATTCTATCAGCATTATGTACTTTTCCAAAGAGAACAGCACTTGGCAGATGAGGTGttgaatattaaaacaatagaaataagAGGAATCATTGGAATTTATATGATCTTTTTGTGTATACGATGACAATCCTTCTTTTGAGCCAATCAGAACTCAGCAAGCATGGACTCTGCATTCTGATTGAAACTTTGATCAGCATAACTTGAGGCAACATGGCCACCTGTTGCAAATCATCCATGACACCGTGGCAACACTTGGATCCAGGGTTCTGATTTGTTTTTGAGAATCAGCTGCTACTTGCTCTTTCACAGATAATAGACAAAATGTTGTTAACCTTATGCTAACCcttaaactatttttgtttcaaacGAGTGATAATTGTGGTCTATGTCCATGTTTTGTCtactaaaaatggaaaaatgttttatttagaatcTTTAATGTGCAAAATGCTGATGTGGTTCTTGCAATTCCTTTGAGCATCCTGAATCTTTCACATAGGCACAGTGTCCACACCTGCACATGCCTATGACTAATCCATTCCAACAGAACATTGATTTAAAACGGggatacacatatatttttctcaGAAGGTATAGAAGATGGCATTCCAATTACAAGGTATACAACCTTGAGAAGTTGTTCTCTAGTAAATCAATCATTTGTACCTGGTTATGGTTTCTCTGTGACCACACTACATTTCCAACAAATATTCAATAAAGACCAGCCAAAGCATCAAGAACTAGAGCTCTCTAATAAGATGTGCAGGTGGCAAAATAGCCTGTTGTGCTTTACACCTACTAACTGTTGACAACTTTAGACTATGATGTGCTTCTCTGCTGTTCACCTCTCTAGAGAGATTAAATTCTTCTGAACCATTTTCTGTCCAATTCAGCCATCTGCATCATCATCTGCTCATTTCAATTTCACTCTCTGTTTGCTTGATTGCTTGCTGTCCTGCATTTACCCAAATCTGAACTTTATGGTCAATCATAGGTGATTATACAGACCTGACGCACCTCCCTGTCTTTCATCGTTGCTCCCCTAAAATCTTAAATTACTGTAAACAGCCTGAGAATCTGTGATTATGTGATTTTTCTCCATGATAACTGGCAACAGTCTACAGTCTTTTAGGTTATTCCACCCTCTTGCTACTCATTTAAGGTTAGTTACATTTACCCATCATCTTTAAATGTTAGAAATTGCATTTGATAATGGGAAAGAGCTGCTGAATGACGAGATACACTATAAAATCCTGGATACCTGCAGGCTTTGCAAAAGGTCTTTAATAACATGGTAGTGATTGCCTCCTTGATCTACACCTTACTTAAACCTGTCAATCATCTGCCCATTTTGGAGGCCTGCACCGCCTCTTTCGTTAAACTCTAAGCATCTTCTCCAAATCCCGCCACCCCGCCGAGTTTAGATCAGCTGGAGACAAGCACTTCTGATGAGTCCGTCCCTATACACCTCCCAAATTACCCTCATAAATGATGCAAGCATGTGCAcgcatgtgtctgtgtgtcctAGACTGGTGTTTAACCTACCATGGGGGTGGCTTACCACTCAGCGGGAGCGAACAACCACGCGCTTCTTCTCTTCCATCACCTCCTCCTCTCCGTCTTTGTCAGAGTTAGTGGCGAGAGTGACGTCGAGGAGAAAACAAAGAAGATTCCAAGAGTCCCTGATGAGCACTAGGTCAAGGTCACTGCCCAATTATCCatgtctttcattttcattctgtcTTTTCAGTTCTCTCTACTATCCTCTCTGTTCCCTCATTTTCTCGTTCACCAGGCGGGAAAGTAATCGTTGTCATCCCATGCTGTGGTGTCGAGGTTAAGTGGAGGTGATCATGTCTCCTTGTGGAAAGGCTAGTTCCTTGAGAAGCAGCAGACTCCTGGAGAGGCATGTCTGAGAAGTGCTGCGGTTAAGACAAAGGCTTAGTTTGACTCATTTGTTTGGTATCTGGTCGTCTACAAAGCCACTATCACTTTAGGTTGactttcagtgttttgaatggAAAAACTGAAGGCCACTTTCTTGTACGTACACACACTATTTAGAGGATTTTGATTAGGACGACCTGAAGTGTTTATAATTTATCGCTTTAATATGAAATTTACAGGTACACAAGAATGtcccaaacaaaataaaacaaaaagtaaaggATCATAATCATTTTCAATACCCCATAAATTTCTGAGAAAAGATGTTCTTGCTCGTCTTgctaatgcttttgtttttcatacagTGCCTCTGAACTAAGCACAATGCTCCAGTTCTTGCTTTGGAGATGACAAAATTAGATGATCTCATAATTTTCAtcagttttcatcatttttgtaCTCATAAACGCCTACAATGTGAATCAGGATTGCCACTCCTGAATTGGTACTTTCCTTGTCAATCGAATGCATTGTCATTATCACTAAGTGATAATTAACTTATGTGCATCATTTGGCTTCTTTGTTTGTAtgacaatgttttgttttttgattttgtttttcaaatgctgttgtttaaataaagtgcattcaAGGAAATGGA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0055113 epiboly involved in gastrulation with mouth forming second biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104518 lncRNA downstream 71870 15762383 ~ 15762669 (-) True G70660
TU104479 lncRNA downstream 190263 15642259 ~ 15644276 (-) True G70633
XR_006251775.1 lncRNA downstream 196103 15628883 ~ 15638436 (-) True LOC122351574
TU104406 lncRNA downstream 412962 15418999 ~ 15421577 (-) True G70581
TU104305 lncRNA downstream 558698 15269829 ~ 15275841 (-) True G70503
XR_006251840.1 lncRNA upstream 73229 15948113 ~ 15953976 (-) True LOC122352066
TU104861 lncRNA upstream 243398 16118282 ~ 16120319 (-) True G70894
XR_006251709.1 lncRNA upstream 730483 16605367 ~ 16631420 (-) False LOC122351188
XR_006251710.1 lncRNA upstream 730483 16605367 ~ 16617024 (-) True LOC122351188
TU104934 lncRNA upstream 735386 16610270 ~ 16610561 (-) True G70955
XM_043248898.1 mRNA downstream 105739 15716322 ~ 15728800 (-) True rftn2
XM_043248422.1 mRNA downstream 126875 15701915 ~ 15707664 (-) True hspd1
XM_043249076.1 mRNA downstream 141924 15682700 ~ 15692615 (-) False sf3b1
XM_043249691.1 mRNA upstream 19238 15894122 ~ 15899152 (-) True dnajb11
XM_043248043.1 mRNA upstream 27463 15902347 ~ 15904183 (-) True LOC122351158
XM_043248042.1 mRNA upstream 31144 15906028 ~ 15907567 (-) True LOC122351156
XM_043248041.1 mRNA upstream 34400 15909284 ~ 15913570 (-) True ercc1
XM_043249362.1 mRNA upstream 55737 15930621 ~ 15932536 (-) True olig1
TU104521 other downstream 62675 15771421 ~ 15771864 (-) True G70663
XR_006251733.1 other downstream 435102 15389849 ~ 15399437 (-) False tmtc4
TU104362 other downstream 528564 15303103 ~ 15305975 (-) True G70549
TU104031 other downstream 1580763 14196479 ~ 14253776 (-) True G70317
TU103993 other downstream 1894671 13938259 ~ 13939868 (-) True G70294
TU104983 other upstream 942256 16817140 ~ 16823694 (-) False G70986
TU104984 other upstream 942256 16817140 ~ 16823775 (-) True G70986
TU105258 other upstream 1360988 17235872 ~ 17255491 (-) True G71118
XR_006251863.1 other upstream 2694871 18569755 ~ 18569882 (-) True LOC122352185
TU106113 other upstream 3845614 19720498 ~ 19721737 (-) False ankar

Expression Profile