RNA id: XM_043249432.1


Basic Information

Item Value
RNA id XM_043249432.1
length 2411
RNA type mRNA
GC content 0.39
exon number 2
gene id adat3
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 19713485 ~ 19716443 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATAAAGGAGGGAACAAGACTAACATGGAAGAGAGAGATGTGTTAGACCGAATTGGATAATTTTTTCAAGCTTGGCTTCTATAAAGAAGATGTCGTCAGTAAACTCCTGACAATCTATTAAATGAACGAAACAAGATGGAGCCACAAGCCAAACGAAGGAAAGAAATGGACAAATACGACACTTGGGATGTTCTTCCAGTTCTCTCTGACAAACAGTCCCAGGACACCGAATTGTTGCCAGCCTACGCTGCACCTATCATGGAGAAAAGACAAACTTCCCGCCTGGTTCAGGAGCTTTCCCTGATCCACCCTTTACCCGATTTGCAACACATAAAAAGAGTGAGAGCTTGCAAGGACAAAAGCTCTCCTCATCCATTAGAGGTCATTGTGTGCTTGGCCAGGGATGTGCAGGTGATAGACTGCGAAAGAGTTACGCTTGCCGATCTGCTTCGCCCACAGTCTTTTGACTCCAGTGGTTTGGGAGAACCTTTCCTTGTCGAAATACCTGCCAACCCTCCGCTGACGAGACCGCAGTTTGAAAAAGCTAGCGAACACTGGCCCACGTCATTCCACGAGGACAAACAAGTGACGTCTGCTCTGAGAGGCCAGTTATTCGCTGCCCATcagaaacataaaatgcaaGAGTACATGATGGCAGCCGTGGATGCTGCAAAATCAGGCGGGGAGATGGGAATGGATGCGGCGGGCGCTGTGATCGTTGACCCAGAATCGGAGCAGATCGTTGCAGTGGGTCATGACTGTAAGCGGGGCTCTCATCCGCTCCATCACGCTGTCATGGTCTGTATTGACCTCGTGGCCTGCGGGCAAGGAGGAGGCGCTTATAGCTACGAGAAATATCCAGCCTGTCGGTTTAGAGGCTCCGTGTCCTTCAGGAATGCCTGCAATGCCAAAGAAAGCGGCCTGCCTTACATCTGCACTGGATATGACCTTTACGTCACTCGAGAGCCGTGCGTGATGTGCGCAATGGCTTTGGTCCACTCAAGAATCAGCAGGGTGTTTTATGGGGTGCCCTCTGCAGATGGTGCCTTGGGAACCAAGTATAAAATTCACTGccaaaaagatttaaatcatCGCTTCGAAGTGTTTAAAGGGGTGATGCTAAATGCATGCGAGGCTTTAcacaaaaagtgatttttttttttatacattcacatcaaagatgacattttaatagtttttacatttccaattacaaccaaatataattttcttttacataggaccgtaataaaaagtataaaaaaaatgctgtctacGTTTAAATATTCTTACGTCtaagtatcatgtgacactaaggACTGGAGTGAAGATGCTGAAACttcataaatagcatttttaaatataacaaaatggaAAAGTTATTACATTTCTCAACCTTTTCGAACAGTGGTGTTTATGATTGTATGATTTGCATCGAATGCATTTCTTATTtcacaaaattcatttttatagtgAAGAACAGAGTTCGTAATActttgtaaagttttatttgtttgcagcATGTCATACAACACACAACATCCTACGTTCATACCTTTTCTCAAAACAAAAGGACAAAACAATTGGCACAGTCGAGCCTTTGCAAATATTGTCAAAAGACAAGAAAGTGGAAGAATACAAATAGTTAATGGGTTTATGTTACAGTTTCTCAACTTCAATAATACTGTGACAGAAAAGAGCAAAGAAACATGATGGTTTGCTGAAGCTTGGTAATGATCCAgagatttaaaatgacatactGATATTGAGCtaaaagtcaacatgaaatattctGATTCAAACATTTAGGGAAGAACTTGATGTTTTGTTTCGGGGGCAGAGGAAGCCGTTCAAAATTTACACGAAAATGTCGTGCACagataaaatgttcaaaatgagACCAGAAACATGtaaaaagaataagaaagttctatttttgatttcatgttgactctACTGAAATTACTTAAAAGGCTAAATGTtgttaatgctattttttttctttgtcatttaTTAGCTGTAAGACattaactaaacaaaactaCGGCGTACTGAgatgaacaaatattttttcaggaAATCATGCAAACtgactttttatttgttgtctCTAAAGCAATGATAACATTAACGAAACAGCAGAAAGGTTTCAtggcttttaaattatttttaaaacacattttgtcaaTTCATGGAATTATCTAAGAATGCATTTAGAAATGTGAAGTGACACTAAAAGCATAAAACTATCTTAGTGTATCAGTGTTGTGAGCAcatttgaacaaacaaaaactatatgaacgaaaaaaaaaaactaaaacaacaacaacaaaaaaataattaattaacaaaaaaaaaaaaaaaaaaccatgaaaCCTGGGCCAGCCCAGATCCACGAGGATCACAAAACAA

Function

GO:

id name namespace
GO:0008033 tRNA processing biological_process
GO:0016787 hydrolase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K15442 TAD3, ADAT3; tRNA-specific adenosine deaminase 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106074 lncRNA downstream 1301 19709384 ~ 19712184 (-) True G71645
XR_006251727.1 lncRNA downstream 32086 19674731 ~ 19681399 (-) True LOC122351289
TU106096 lncRNA downstream 42321 19667000 ~ 19671164 (-) True G71667
TU105978 lncRNA downstream 169638 19537741 ~ 19543847 (-) True G71587
XR_006251732.1 lncRNA downstream 187895 19519740 ~ 19525590 (-) True LOC122351304
TU106115 lncRNA upstream 14293 19730736 ~ 19731239 (-) False ankar
TU106128 lncRNA upstream 74804 19791247 ~ 19791560 (-) True G71692
TU106135 lncRNA upstream 83169 19799612 ~ 19807087 (-) True glsb
TU106137 lncRNA upstream 83169 19799612 ~ 19804599 (-) False glsb
TU106132 lncRNA upstream 83964 19800407 ~ 19807087 (-) False glsb
XM_043249043.1 mRNA downstream 4515 19684890 ~ 19708970 (-) False pms1
XM_043249042.1 mRNA downstream 4515 19684890 ~ 19708970 (-) True pms1
XM_043249044.1 mRNA downstream 4515 19687834 ~ 19708970 (-) False pms1
XM_043249045.1 mRNA downstream 4515 19687837 ~ 19708970 (-) False pms1
XM_043248250.1 mRNA downstream 70552 19636451 ~ 19642933 (-) True pofut2
XM_043248068.1 mRNA upstream 3499 19719942 ~ 19731794 (-) True ankar
XM_043249547.1 mRNA upstream 17457 19733900 ~ 19736121 (-) True asnsd1
XM_043249549.1 mRNA upstream 19590 19736033 ~ 19737211 (-) True LOC122352057
XM_043249391.1 mRNA upstream 34099 19750542 ~ 19766793 (-) True wdr75
XM_043249392.1 mRNA upstream 34099 19750542 ~ 19766787 (-) False wdr75
XR_006251863.1 other downstream 1143603 18569755 ~ 18569882 (-) True LOC122352185
TU105258 other downstream 2457994 17235872 ~ 17255491 (-) True G71118
TU104984 other downstream 2889710 16817140 ~ 16823775 (-) True G70986
TU104983 other downstream 2889791 16817140 ~ 16823694 (-) False G70986
TU104521 other downstream 3941621 15771421 ~ 15771864 (-) True G70663
TU106113 other upstream 4055 19720498 ~ 19721737 (-) False ankar
TU106134 other upstream 79814 19796257 ~ 19804599 (-) False glsb
XR_006251780.1 other upstream 165381 19881824 ~ 19893315 (-) False mfsd6b
TU106614 other upstream 772721 20489164 ~ 20503890 (-) False G71938
TU106615 other upstream 772721 20489164 ~ 20503890 (-) True G71938

Expression Profile