RNA id: XM_043249441.1


Basic Information

Item Value
RNA id XM_043249441.1
length 2562
RNA type mRNA
GC content 0.42
exon number 3
gene id LOC122351989
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 14569810 ~ 14573059 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGCCATTTTGGGAGTCAGATTGTAAATATTACTAGGGAACAAAAGCAAATACGTCCCCAAATTCGGTGGCCTTAATATGGTTCACACGTGCGTTGTGGCCGGTTGTCGGAACAGGAGGACTCCTGGGACCACGTTATCTTTCTACAGGTTTCCTCGCGACCCGGAGCGGAAGCAACGCTGGATCGCTGCTGTGAATCGTGAAGGGTGGGTGCCAAACGAGGGCAGTAGACTCTGCAGCACACACTTcatttcagGTGGGGTGGGATCACGCACCAGTTGCACTGCCCAAAGGACGATCCTATATATCAAAGATATACTTCATTGTGTCTGATTGCTCAGCATTTTTGTGCAGAAAACAAGTGAAAAATCCTAGATCCCCAGACTATGTTCCTTCTGTTTTCACTTCAGCGCCACTGTCGTCAAATATGAAGGAAGCAGGTGCATGTGAAATGTATGATAAACAAGAGGCACAAGTGGAGGCCGCCAATGCTTTGCTCTTCCTGCAAGGACAAGGACGCTTCTTGGAGGACCATGGCCAGACTAGAAATCAAGAAGAGCCAGAAAGTGTTTCTTCTTCACTAAGCAGCTGTGATGAAGAGGATTATAAGACTGAGGATTATAAAATTGAAGATTACATAGAAGAGGAAATCTCACTGACAAGAGTAAACCAAATGGGAAGCCCAGTCAAAAACATTCCCCCTGACTATGAATCCAGTCTTGACGCTCTGAAGAAAGAGAACATGGAGCTGAGAGAATCGATCGAAAAGATGTCTTTCACTGAGGCATCATTTAGAAATGATCCAGAAAAGGTTCGCTTCTATACGGGACTGCCGAACTACTTTGTGTTTGAGACTGTCATGATGCTGCTCATGCCACATATGAAAGGTGATAAAAATGCGAAACTTTCAAAATTCCAGCAACTTCTCTTGACGTTAATGCGACTCAGGCTTGATCTTAAAAACCAAGACTTGGCCTATCGTTTTGGGGTCAAGGTTGCCACCGTGACCAGGACTGTCCATCggattattaatataatgttcatCACCCTCGTGCCCACTGCTGTTTTTTGGCCATCCAGAGCAGAGCTCAGAAAAAATCTACCCACAGCTTTGCTTTGCATGTACCCAGACTGTGCAGTGATCGTTGACTGCTTTAGGGTGTCTCTGGAAAAAGCTCTCAGTGTGGATGTGAATCAAGAGCATGCATCTACAGCATTGACTGTGCCGGCTCATGCCACGGTGAATGAGCTTAAATATGTGATAGGTGTTGCTCCTCAAGGTGTGGTCACATTTGTTTCAAGGGGATCACCGGGTCATGTCAGTGACAAAAATCTTGTTGAGAGTTCTGGCCTCCTTTGTAAGATACTGCCTGGTGACGTTGTGTTGGCTGAGCATGATTTTGACATCGAGGGTTTGGTGGGGGCTCGCAAAGCAGAACTCAAAATCACTAGTAGAAATTGCTATGAAAATTGCCAGAGTGGACAAGATGGAGACAATTTCTCACTGGTTGGCACGCATTCAGATAAAGCGAATGTTCACAGGCATGTTGGGAAGGTAATAGACATGGTGAAGAGGAGATATTCTATGTTGACCGGACCAGTGGAAAGTCCCTTTATGGTTGTCGACCGCACTTCCAATGTGAGCACTTTTGATAAGATAGTGCAGGTTGCTTGTGCCTTGAATAACCTGTGTATTTCTGCTGCGCCCCTGGAATGAGCACTCATATATGCCACACTTTTGTGAAAGCGACTTTTATTTGTACATTGGCTGAATgcacttttattgttttcctaTTTTAGCAGAGGACTTTTCATTAAAAGAGGATCTTGACCTTTCTTAGAACATTTATGCAACCTAAGGACTAGATTATACCAAACATATTCATCAGGCAGTTCACTGGACAATCTCCCCTCTAGTCTTTTTACATAAGGAACttccttatttttttaagcttacTTTGTTGATGCTTCGGTATGGTAGAGACATTTCATCCATAGTTTAACTTCAATTTAGTATTGTCTAAAGTGAAGCGTGTGTGCTGAGAATCTAAAATATTCAAGGCATTAAAGAATGCCTCTCAGTCGGAGACTGTTGTATTTTGACATTAGCTGCCCTAAGTTCCAGTGCCTTTTGTCCTTATGATGCCTATACCATATTTTTGCTTCTATATAGATATAcactatatttttacattaatccAGCTgtactatgttttttttacttttgatgtTGCCATGTCATTCTACCATGTAACGTGTAAGTCTCACAAAGTTACAGTTTAGTTATTGGCATTGCTGTGTGATCATTATTGTGTTGAATCAACATTTAGTAACTTCTAGCATGATATATTCACTCAGAGTTTTGACCATTGCACATGTTTCAGCACTGTATCCCTCTCCATCAATTAAGTGtgtgttgcatttatttgtgttattgtctgtgaaagcaatgtttgttgaattttacattttactcatGTGTCCTATGTGAAAACCAACACGACTGTAATTTAATGTAGCACTCTGTTGTAtaacatgtataaaaatatcTCAAGAAAATTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104117 lncRNA downstream 6818 14477332 ~ 14562992 (-) True G70382
TU104075 lncRNA downstream 197136 14363039 ~ 14372674 (-) False LOC122351495
TU104049 lncRNA downstream 322482 14244287 ~ 14247328 (-) True G70332
XR_006251857.1 lncRNA downstream 380809 14173817 ~ 14189001 (-) True LOC122352120
TU104012 lncRNA downstream 644974 13924616 ~ 13924836 (-) True G70309
TU104132 lncRNA upstream 16821 14589858 ~ 14590275 (-) True G70393
TU104140 lncRNA upstream 21226 14594263 ~ 14595342 (-) True G70396
TU104139 lncRNA upstream 21387 14594424 ~ 14595342 (-) False G70396
TU104213 lncRNA upstream 343763 14916800 ~ 14918840 (-) False G70438
TU104214 lncRNA upstream 343763 14916800 ~ 14918840 (-) True G70438
XM_043249439.1 mRNA downstream 676 14552182 ~ 14569134 (-) False lats2
XM_043249438.1 mRNA downstream 676 14552182 ~ 14569134 (-) True lats2
XM_043249437.1 mRNA downstream 677 14552182 ~ 14569133 (-) False lats2
XM_043248391.1 mRNA downstream 18357 14521398 ~ 14551453 (-) True xpo4
XM_043248392.1 mRNA downstream 23110 14521398 ~ 14546700 (-) False xpo4
XM_043249443.1 mRNA upstream 1758 14574795 ~ 14578272 (-) True ska3
XM_043249444.1 mRNA upstream 1758 14574795 ~ 14578261 (-) False ska3
XM_043248415.1 mRNA upstream 6246 14579283 ~ 14585833 (-) False hcn5
XM_043248414.1 mRNA upstream 6246 14579283 ~ 14585833 (-) True hcn5
XM_043249033.1 mRNA upstream 22357 14595394 ~ 14602797 (-) False pla1a
TU104031 other downstream 316034 14196479 ~ 14253776 (-) True G70317
TU103993 other downstream 629942 13938259 ~ 13939868 (-) True G70294
TU103924 other downstream 756483 13807822 ~ 13813327 (-) True G70261
TU103524 other downstream 1074165 13473140 ~ 13495645 (-) False gypc
TU104362 other upstream 730066 15303103 ~ 15305975 (-) True G70549
XR_006251733.1 other upstream 816812 15389849 ~ 15399437 (-) False tmtc4
TU104521 other upstream 1198384 15771421 ~ 15771864 (-) True G70663
TU104983 other upstream 2244103 16817140 ~ 16823694 (-) False G70986
TU104984 other upstream 2244103 16817140 ~ 16823775 (-) True G70986

Expression Profile