RNA id: XM_043249447.1


Basic Information

Item Value
RNA id XM_043249447.1
length 1577
RNA type mRNA
GC content 0.45
exon number 12
gene id tmem237a
representative False

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 8056543 ~ 8063095 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTCATCTCACACCAACAGCTCCTGCGCCACGACTCCAGCCAGACAAGAAtgggaagaaaacaaacaTCCTGATTTTCGGTTGTGTGACATCAAGACACCAGCGACAAAATGCCAAGTGTCAAAcccaagaaaaagaaaatcaagaaGGACATCAATGAAGTTGAGGAACCACAAGCGGGGCCCGAGCCAGCTATAGAAATGGAGGATCTGGAGAGCCGGAGAGAGACCCTGACCCCTGAGCCTCAGGACAATCCaccacagaagaagaagaagaaaaagaaggcaCATACTTTTGatgAGAGTGAACAACAGGACCTTCCTAATGGAGATGTTCAAGATCCACATACAGATGATGAAGAAGTCACCAGAAAAAGCAAGAGAAAAAGGAAGGTTAAGATGATGGAAAACCAGTCTCATAATGAGCTCGGCGTGGAGGAGGACGACATAATCACCGATGTGCACGCACCCATATCTCAGCGCTCTCTATTCTCAGCCCCTCTGGGTCACAGTCATCCGATCGGAAAAGTGTTTGTGGAAAAGAACCGCCGCTTCCAGGCGACCGATCGTTTGAATTTATCCCGTGACCATATGGAGGAGTACATGGAAGTCAGGCCAATGTGGAATACACGAGATGTCGCCATGAGGGTCCACAGTGGCTTCAGGATCATTGGACTGTTCTCTCATGGGTTTCTGGCAGGATATGCGGTGTGGAATATCATTGTGGTGTATGTGTTAGCTGGAGAGCAGATGACCACTCTACATAACCTTCTCCAGCAGTACCACAGTCTGGCTTACCCCGCACAGTCTCTGCTTTACCTCCTGCTGGCCATCAGCACCGTGTCTGCCTTTGACAGGGTGAATCTGGCCAAAGCCTCCATGGCTCTTCGGGGTTTTCTCACTCTCGATCCAGCGGCTCTTGCTTCCTTCTTATACTTTGCCGCTCTCATCCTGTCTCTGAGCCAGCAGATGACCAGTGATCGAATACATCTCTACCCCACAGCCAATGAAACGCTTTGGCCCCCGGGTTCAGAACATCAGATTCTCCAGCCCTGGATCGTGGTAAACCTGGTCGTAGCTCTTCTGGTGGGTCTGGCCTGGGTGTTCGTTGCTACACGACCGGACATGGACTACACCGAGGAGTTTTTAATGGCGATGGAGGTGGAGGAGTATCCGCGTCACGATGAGAAAAATGAGCTGGCAGCCTGATACACCCATGCATGatttacatatattaacattgttttgtgttaaatgtcttgaagtaaacattttgtatgttacgttgttgttgttgagctTGTTACATACTGTAgataataaacttttttgttaagTTTCCTGTTTGCCTTTTTTGTTGATCTTCTAAGTGTGTATTTTAGAAGTAcgacttttttttgtctatggATCGACAAGAACTGAATTTACAGTATAGTCATTGAgcaattagaaatgttttgtttaaatgcttttaccAGAAGTATTGTATTGCATATTGCAGGTATTAATTGCAGTAAGTTGCTTTGCATAGAAGCTACTAAAATTGTGTGCTAAATTAATAAAGGCAAATAAATATAGCA

Function

GO:

id name namespace
GO:0060027 convergent extension involved in gastrulation biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101355 lncRNA downstream 234654 7820008 ~ 7821889 (-) True G68554
TU101356 lncRNA downstream 237711 7815249 ~ 7818832 (-) True G68555
TU101275 lncRNA downstream 675035 7381290 ~ 7381508 (-) True G68489
TU101258 lncRNA downstream 715049 7327829 ~ 7341494 (-) True G68473
TU101111 lncRNA downstream 902589 7146440 ~ 7153954 (-) False LOC122351350
XR_006251831.1 lncRNA upstream 407845 8470863 ~ 8474578 (-) True LOC122352023
TU101773 lncRNA upstream 698753 8761771 ~ 8835225 (-) True G68822
TU101778 lncRNA upstream 730843 8793861 ~ 8801749 (-) True G68826
TU101782 lncRNA upstream 739367 8802385 ~ 8805405 (-) True G68830
TU101792 lncRNA upstream 753502 8816520 ~ 8817618 (-) True G68839
XM_043249157.1 mRNA downstream 1375 8026229 ~ 8055168 (-) False abi2a
XM_043249159.1 mRNA downstream 1376 8026229 ~ 8055167 (-) False abi2a
XM_043249158.1 mRNA downstream 1376 8026229 ~ 8055167 (-) False abi2a
XM_043249154.1 mRNA downstream 1376 8026229 ~ 8055167 (-) False abi2a
XM_043249153.1 mRNA downstream 1376 8026229 ~ 8055167 (-) False abi2a
XM_043249500.1 mRNA upstream 1635 8064653 ~ 8074446 (-) True mpp4a
XM_043249161.1 mRNA upstream 13450 8076468 ~ 8094847 (-) False als2a
XM_043249162.1 mRNA upstream 13450 8076468 ~ 8094764 (-) True als2a
XM_043248551.1 mRNA upstream 141262 8204280 ~ 8209919 (-) True LOC122351474
XM_043249069.1 mRNA upstream 149770 8212788 ~ 8222003 (-) False carf
TU101496 other downstream 38438 8014449 ~ 8018105 (-) False LOC122351623
TU101110 other downstream 907923 7070985 ~ 7148620 (-) False LOC122351350
TU100887 other downstream 1795474 6246900 ~ 6261069 (-) True G68188
TU100850 other downstream 1956660 6099347 ~ 6099883 (-) False LOC122351979
TU100782 other downstream 2012618 6043275 ~ 6043925 (-) True G68124
XR_006251804.1 other upstream 16118 8079136 ~ 8094847 (-) False als2a
unassigned_transcript_1465 other upstream 277925 8340943 ~ 8341015 (-) True trnak-uuu_106
TU102057 other upstream 1845170 9908188 ~ 9910178 (-) True LOC122351483
XR_006251819.1 other upstream 2370489 10433507 ~ 10441872 (-) False trim13
XR_006251818.1 other upstream 2370489 10433507 ~ 10441872 (-) False trim13

Expression Profile