RNA id: XM_043249449.1


Basic Information

Item Value
RNA id XM_043249449.1
length 1323
RNA type mRNA
GC content 0.51
exon number 8
gene id tra2b
representative False

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 8453604 ~ 8459325 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TAAAGCCTCTACGACAGCGAAAGGCGGTCATTACCAGACGCGCGGTCCGAGTGCGTTTGGGCGCTGTATTTGGTTTTCGTTTGTAATATCTCTCCCAGTGTTACCGCTGCAGCGCAATACACGCAAAACAACAATGAGTGACGCCGAGAAGGAATTCGTGGAGCGGGAGTCCCGCTCGACCTCTAGGAGCCCAAGTCCTAGAGGATCTGCTAAGTCAGCCAGTCGCTCGCCAGAACGCTCCCCTGCTCAGTCCAAAGAGGGGTCCCACCACTCTCGCTCGAAGTCCCGCTCTCGTTCCAGGTCTAAGACTCGGTCCCGTTCCCATCGGAGCTCTCGCCGGCACTACAGTCGTTCCCGATCACGCTCTCATTCCCGCCGGAGACGATCACGCAGCCGCTCGTACAGCAGCGAGTACCGCCGCCGCCGCAGTCACAGTCATTCTCCTATGTCCAACCGCAGACGTCACGTTGGAGACCGGGCAAACCCAGACCCCAACAGCTGCCTGGGAGTGTTTGGCCTAAGCCTGTACACCACAGAGAGAGACCTGAGGGAGGTCTTTTCCAAGTTTGGCCCTCTGAGTGACGTCAGCATCGTGTATGACCAGCAGTCTCGGCGCTCCAGGGGTTTTGCCTTTGTCTACTTTGAGAACAGAGAAGATTCAAAAGAGGCTAAGGAGCGTGCAAATGGTATGGAACTAGATGGCCGCAGAATCAGAGTTGACTACTCGATTACCAAGAGGCCACACACACCTACTCCGGGAATATATATGGGCAGACCAACATATGGTGGAGGGCCGAGTGTAAGCCGCCGCCGTGATTACTACGAGCGAGGATACGAGCGTGGATATGATCGCTATGATGACCGAGACTACTACAACAGCAGGTCGTACAGGAGAAGATCCCCCTCTCCTTACTACGGCCGAGGACCGTACAGGTCGAGATCACGCTCCCGCTCCTACTCTCCTCgtcATTACTAAAGTGAAGTTCGACTCCTCTCGCCATCCCTGAAGATGATGTTGATGACAATGACGTTCTTGTTGACGtagatgttttatttctggTGGCATGAGTTTGGATGTTCTTTAAACTCAATCCGTTTGATTTCTTGCCTAAAGGTTTCACATGTCTTTGACTGATCTGGATATTTCGGTAGTTTCAATATTTGTGCAcacttgagtttttttttttttttttttttttttaagtttccaaTCTGATGCTGAACTTGcgtttattttatatgatgTCCTGCTCACACCCcgttatgtttttatcagttttaagCTTAGCAGTGGTCTTGCAATAAACTGCTTTATACCTCCCA

Function

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101562 lncRNA upstream 230788 8222587 ~ 8222817 (+) True G68678
TU101545 lncRNA upstream 247642 8203853 ~ 8205963 (+) True G68668
TU101216 lncRNA upstream 599327 7853481 ~ 7854278 (+) True G68446
TU101200 lncRNA upstream 1117246 7335491 ~ 7336359 (+) True G68435
TU101154 lncRNA upstream 1152110 7298033 ~ 7301495 (+) False G68397
TU101678 lncRNA downstream 43431 8502756 ~ 8506143 (+) False igf2bp2a
XR_006251751.1 lncRNA downstream 141399 8600724 ~ 8614984 (+) True LOC122351403
TU101758 lncRNA downstream 366887 8826212 ~ 8827046 (+) True G68808
XR_006251839.1 lncRNA downstream 400148 8859473 ~ 8860379 (+) True LOC122352063
TU101765 lncRNA downstream 407814 8867139 ~ 8868277 (+) False fev
XM_043248312.1 mRNA upstream 932 8442360 ~ 8452673 (+) True tspearb
XM_043249725.1 mRNA upstream 20122 8431111 ~ 8433483 (+) True sumo3b
XM_043248125.1 mRNA upstream 22991 8427846 ~ 8430614 (+) True pttg1ipb
XM_043248896.1 mRNA upstream 26676 8366662 ~ 8426929 (+) True myo10l3
XM_043249496.1 mRNA downstream 1419 8460744 ~ 8504796 (+) True igf2bp2a
XM_043249497.1 mRNA downstream 1419 8460744 ~ 8504796 (+) False igf2bp2a
XM_043249498.1 mRNA downstream 1419 8460744 ~ 8504796 (+) False igf2bp2a
XM_043248712.1 mRNA downstream 51387 8510712 ~ 8519346 (+) True ehhadh
XM_043248716.1 mRNA downstream 61609 8520934 ~ 8528871 (+) True zgc:162707
TU101615 other upstream 20122 8431145 ~ 8433483 (+) False sumo3b
TU101608 other upstream 110926 8341298 ~ 8342679 (+) False si:ch211-167j6.3
TU100736 other upstream 2488725 5962967 ~ 5964880 (+) False LOC122351907
TU100723 other upstream 2567852 5883927 ~ 5885753 (+) True G68097
unassigned_transcript_1464 other upstream 2996076 5457458 ~ 5457529 (+) True trnam-cau_112
TU101764 other downstream 405324 8864649 ~ 8865897 (+) False cryba2b
XR_006251841.1 other downstream 683267 9142592 ~ 9149666 (+) False si:ch1073-416j23.1
XR_006251842.1 other downstream 683267 9142592 ~ 9149661 (+) False si:ch1073-416j23.1
XR_006251853.1 other downstream 983800 9443125 ~ 9556647 (+) False thsd7ba
XR_006251850.1 other downstream 1869406 10328731 ~ 10395230 (+) False il1rapl1a

Expression Profile