RNA id: XM_043249453.1


Basic Information

Item Value
RNA id XM_043249453.1
length 1001
RNA type mRNA
GC content 0.55
exon number 7
gene id tra2b
representative False

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 8453604 ~ 8459325 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATAAAGCCTCTACGACAGCGAAAGGCGGTCATTACCAGACGCGCGGTCCGAGTGCGTTTGGGCGCTGTATTTGGTTTTCGTTTGTAATATCTCTCCCAGTGTTACCGCTGCAGCGCAATACACGCAAAACAACAATGAGTGACGCCGAGAAGGAATTCGTGGAGCGGGAGTCCCGCTCGACCTCTAGGAGCCCAAGTCCTAGAGGATCTGCTAAGTCAGCCAGTCGCTCGCCAGAACGCTCCCCTGCTCAGTCCAAAGAGGGGTCCCACCACTCTCGCTCGAAGTCCCGCTCTCGTTCCAGGTCTAAGACTCGGTCCCGTTCCCATCGGAGCTCTCGCCGGCACTACAGTCGTTCCCGATCACGCTCTCATTCCCGCCGGAGACGATCACGCAGCCGCTCGTACAGCAGCGAGTACCGCCGCCGCCGCAGTCACAGTCATTCTCCTATGTCCAACCGCAGACGTCACGTTGGAGACCGGGCAAACCCAGACCCCAACAGCTGCCTGGGAGTGTTTGGCCTAAGCCTGTACACCACAGAGAGAGACCTGAGGGAGGTCTTTTCCAAGTTTGGCCCTCTGAGTGACGTCAGCATCGTGTATGACCAGCAGTCTCGGCGCTCCAGGGGTTTTGCCTTTGTCTACTTTGAGAACAGAGAAGATTCAAAAGAGGCTAAGGAGCGTGCAAATGGTATGGAACTAGATGGCCGCAGAATCAGAGTTGACTACTCGATTACCAAGAGGCCACACACACCTACTCCGGGAATATATATGGGCAGACCAACATATGGTGGAGGGCCGAGTGTAAGCCGCCGCCGTGATTACTACGAGCGAGGATACGAGCGTGGATATGATCGCTATGATGACCGAGACTACTACAACAGCAGGTTTGAATGTCACTTCTTTGTGATCGGTAGATGTTGCGGCTCCCATTAAATGTCATGTTTCCGCTCACAGGAGAAGATCCCCCTCTCCTTACTACGGCCGAGGACCGTACAGGTCGAG

Function

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101562 lncRNA upstream 230787 8222587 ~ 8222817 (+) True G68678
TU101545 lncRNA upstream 247641 8203853 ~ 8205963 (+) True G68668
TU101216 lncRNA upstream 599326 7853481 ~ 7854278 (+) True G68446
TU101200 lncRNA upstream 1117245 7335491 ~ 7336359 (+) True G68435
TU101154 lncRNA upstream 1152109 7298033 ~ 7301495 (+) False G68397
TU101678 lncRNA downstream 43952 8502756 ~ 8506143 (+) False igf2bp2a
XR_006251751.1 lncRNA downstream 141920 8600724 ~ 8614984 (+) True LOC122351403
TU101758 lncRNA downstream 367408 8826212 ~ 8827046 (+) True G68808
XR_006251839.1 lncRNA downstream 400669 8859473 ~ 8860379 (+) True LOC122352063
TU101765 lncRNA downstream 408335 8867139 ~ 8868277 (+) False fev
XM_043248312.1 mRNA upstream 931 8442360 ~ 8452673 (+) True tspearb
XM_043249725.1 mRNA upstream 20121 8431111 ~ 8433483 (+) True sumo3b
XM_043248125.1 mRNA upstream 22990 8427846 ~ 8430614 (+) True pttg1ipb
XM_043248896.1 mRNA upstream 26675 8366662 ~ 8426929 (+) True myo10l3
XM_043249496.1 mRNA downstream 1940 8460744 ~ 8504796 (+) True igf2bp2a
XM_043249497.1 mRNA downstream 1940 8460744 ~ 8504796 (+) False igf2bp2a
XM_043249498.1 mRNA downstream 1940 8460744 ~ 8504796 (+) False igf2bp2a
XM_043248712.1 mRNA downstream 51908 8510712 ~ 8519346 (+) True ehhadh
XM_043248716.1 mRNA downstream 62130 8520934 ~ 8528871 (+) True zgc:162707
TU101615 other upstream 20121 8431145 ~ 8433483 (+) False sumo3b
TU101608 other upstream 110925 8341298 ~ 8342679 (+) False si:ch211-167j6.3
TU100736 other upstream 2488724 5962967 ~ 5964880 (+) False LOC122351907
TU100723 other upstream 2567851 5883927 ~ 5885753 (+) True G68097
unassigned_transcript_1464 other upstream 2996075 5457458 ~ 5457529 (+) True trnam-cau_112
TU101764 other downstream 405845 8864649 ~ 8865897 (+) False cryba2b
XR_006251841.1 other downstream 683788 9142592 ~ 9149666 (+) False si:ch1073-416j23.1
XR_006251842.1 other downstream 683788 9142592 ~ 9149661 (+) False si:ch1073-416j23.1
XR_006251853.1 other downstream 984321 9443125 ~ 9556647 (+) False thsd7ba
XR_006251850.1 other downstream 1869927 10328731 ~ 10395230 (+) False il1rapl1a

Expression Profile