RNA id: XM_043249456.1


Basic Information

Item Value
RNA id XM_043249456.1
length 4361
RNA type mRNA
GC content 0.46
exon number 28
gene id LOC122351999
representative False

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 16203973 ~ 16300457 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CATACCCAACACTGGAACTTTAATGCAGGGGCCGTTTAGTGTGGTACGAAGATGCATCAACAGAGAGACAGGCCAACAGTTTGCTGTGAAGATTGTGGATGTGGCCAAATTCACCTCCAGCCCTGGCCTCAGCACAGAAGATCTGAAGAGGGAAGCGAGCATCTGCCACATGCTGAAACATCCTCACATAGTGGAGCTTCTGGAGACCTACAGCTCTGATGGGATGCTCTACATGGTGTTTGAGTTCATGGATGGAGCAGATCTCTGCTTTGAGATCGTGAAGAGAGCAGACGCTGGTTTTGTTTACAGTGAGGCAGTAGCCAGTCACTACATGAGACAGATCCTAGAGGCTTTGCGGTACTGCCATGACAACAACATCATTCACCGGGATGTGAAGcctCATTGTGTGTTGCTAGCATCAAAGGAGAATTCTGCTCCGGTGAAACTTGGTGGATTTGGTGTGGCTATACAGCTAGGAGAGTCTGGATTAGTGGCTGGAGGCCGGGTGGGCACTCCACACTTCATGGCCCCTGAGGTGGTAAAAAGAGAACCTTACGGGAAACCTGTGGATGTTTGGGGCTGCGGAGtcatcctcttcatcctctTGAGTGGCTGCCTGCCCTTTTATGGCACCAAAGAACGCCTGTTTGAAGCAAtcataaaaggaaaatataagATGAATCCCAGGCAGTGGGGCCAGATCTCAGAGAGTGCCAAAGACCTGGTGCGCCGTATGCTGATGCTGGACCCTGCAGAGAGGATCACAGTGTATGAAGCTCTCAACCACCCCTGGCTCAAGGAGAGAGACCGCTATTCCTACAAGATCCACCTTCCTGAGACTGTCGAGCAGCTGAGGAAATTCAATGCCAGGAGGAAACTAAAAGGTGCAGTGCTTGCAGCAGTCTCCAGTCACAAGTTCAACTCTTTCTATGGGGACCCACCTGAAGAACTGCCTGACTTCTCTGAGGACCCTACTTCATCAGGGGCTGTGTCACAAGTGCTTGACAGTTTGGAGGAAATCCATGCTCTGACGGACTGCAGTGAGAAAGACCTGGACTTTCTACACAGCGTCTTCCAGGACCATCACCTCCACACATTGCTTGATCTGTATGACAAGATAAACACCAAGTCTTCACCACAAATCAGGAATCCTTCTAGTGACGCAGTTCAGAGAGCCAAAGAGACCTCCACCGAAGACGGGTCGAGCACGGCTTTGAAACATCTGGAATATgtACTGGAGGAGATTTCATGCTACCCAGAGAATGCAGACGTTAAAGAACTGAGACGGATTCTAACCCAGCCCCATTTCATGGCCTTGCTTCAGACTCATGATGTTGTGGCACATGAGGTATACAGTGACGAGGCACTGAGGGTCACCCCACCCCCCACATCACCATATCTCAACGGAGACTCACCTGAAAGCACAAACGGAGACATGGACATAGAGAACGTTACAAGAGTACGCCTGGTTCAGTTCCAGAAGAACACGGATGAACCAATGGGTATCACgttgaaaatgaatgacttgAACCATTGCATCGTGGCAAGAATAATGCATGGAGGAATGATCCACAGACAAGGAACTTTGCATGTCGGAGACGAGATCCGGGAGATCAACGGCATAAGTGTAGCAAATCAAACGGTGGAGCAGCTTCAAAAGATGCTTCGGGAAATGAGAGGCAGCATCACCTTTAAGATTGTGCCAAGCTACCGCACACAACAATCGTCCTGTGAGAAAGAATCCCCCTCCACCTCCAGACAGTCCCCTGCTAATGGCCATTCCAGCATTAACAGTTCTATCTTGGATTTGCCATCAACCATCCAGCCAAAAGGACGCCAGATCTCCAGACCTCCAATCAAGGATAAATTTTCCATCAAGATCTATGTACGGGCACAGTTCGAGTATGATCCGGTGAAAGATGACCTCATCCCCTGTAAAGAGGCTGGGATTCGCTTCAGGGTGGGTGACATAATCCAGATTATCAACAAAGATGACCATAACTGGTGGCAAGGCAAGCTGGAAAACACCAAGAATGGCACAGCAGGACTGATTCCCTCACCTGAACTTCAAGAGTGGCGGGTGGCCTGTATAGCCATGGAGAAAACCAAGCAAGAACAGCAGGCAAGCTGTACTTGGTTtggcaagaaaaaaaagcagtacaAAGACAAATACCTAGCAAAGCACAACGCAGtgtttgatCAACTAGATCTGGTCACGTATGAGGAAGTAGTGAAGTTGCCGGCATTCAAGAGAAAAACATTAGTTTTACTAGGTGCTCACGGTGTTGGCCGAAGACACATCAAGAACAcactcatcaccaaacacccAGACAGATTTGCTTATCCCATTCCACACACAACCAGACCTCCAAAGAAAGACGAAGAGAACGGCAAGAATTATTTCTTTGTATCCCACGACCAAATGATGCAGgacatctccaacaacgattACCTGGAATACGGCAGCCACGAGGACGCCATGTATGGCACGCGGTTGGAGACGATACGCAAGATTCATGAGCAGGGACTCGTAGCCATACTGGATGTAGAGCCACAGGCACTGAAGGTTTTACGGACAGCTGAATTTGCGCCCTATGTGGTTTTCATTGCTGCACCGACCATCACTCCCGGCATGAACGAGGACGAGTCATTACAGAGGCTGCAGAAGGAGTCTGAGATCCTCCAGAAGACATATGCACACTATTTTGACCAAACCATCATAAATAATGAGATTGACGAGACTATTCGGCTCCTGGAGGAAGCCATAGACCTGGTTTGCACCACGGCCCAGTGGGTTCCAGTGTCCTGGGTCTACTAAAACAACAAACCCATCAACCTGTAACCTTACACCCTTCATAACCTCACACTCTGCGGTGCATCTCTGCAAGAAGGAAAAAAACTTGCAACTTTCCCATGATGCAAACAGAAACCCACCTCTGACGTTTAACAACAACATCGATGTACCTGCAGTGAGCCCAGTCTTGGCCCTTCACAAACTACCTAGACGTAGTGttgtattaatgaaaaaaaatcaataaaataaattactaaatattgTCATGTCTATATAGCTAGGAGGCAACATTTTGTAGACGTttgatttaaagagacagtatcCTACATGGCGCATTTTCCTGAAAGgaatatttttgtagtttttcggcacatttttctgtttgcaCCAGACTGAAAGTGCGGTATTCCATCTGTCCAGCCGTCCATTAACTCAGCCATCATACATAATCCCACATTATCCATGCGGCAGAGCCCAGCTGCTTTAGCACAACCCTGCGATTCAGCTTTCAGCCGTTTCGTTTCgggggggttttttttgttttttttgccttgtttttccCCATTTCACCCTCATTTACACGTGGATACTGTCTCTCTAAAGACgtacataaatgttttagagATTTGAATGAGATCTCATGCATGTGAACATTCACGGGCGTCCATGCTGTCAGTGTTAGCTGTGTTCAGACCGTCACCCACAGCAGAAAACATTCCATTCTTCTGGATGAACACATTCAAACAGGTGGAGCCGGTGACgaagagacgagagagagagaaaaaaaaaaaaaaaaaaagacctatGCACATCCCTTGCATTTTGGCAACTTtgtaaacagtttatttttaccAATCATGtagtaaaatgtgtttgtaaatggtctaaatttttatttgttgtaagaCTAAGGGGTTCAGGATGAAATGTCGTTTGAGAGTATTAATGTCGAATCAGAAATCTCATTTTTATTCCGTGCAGTTGTTTGAAGTAGAGGTGCGTCTGCGAGGCGAAAAGACAACACGTCTGTTCATCTGAATGATTCTGTACATGACAAACTGTTTACTCAAACTGCCCTGTGTAAATGGCTCTACCGATGACAGAGCAGTTCTTCGGTAtgagcgtgtttttttttttcctttttaaatatatttccttttatgtGGTGAAGATGTCCTCTGTGTCTTCTGCTCTGTGTTGCTCGTCCAGCTCTTTCGCTCTGCCTCTCTATGCGAGTTGGCGGAGATGGGCCAATGGAAAACTTTTGGTTCCTCATTTGCCGTTTTGTTTTTCCGGATTTTTCCCAGCAGCTGTGGTAGGTCAGGTCCTGCCCGCTCGGCTCTGCGTGACTGCAGTCGGGATCAGTGCCCAGTTATGTGTCTGAGAGTGAtgcatagtgtgtgtgtttgtctgaccGGTGGTGCTGTGTGTCTGAAGTATTTCTGTATGCAATAGAAACTGAAAGCTAGGGTGCTGCTGCATGTGTAAACGTTCACTTTAAGTGAAGTCTCTTAcattcaccaaggctgcatttatgtcattaaaataaatatgtgaaatattacaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104861 lncRNA downstream 83654 16118282 ~ 16120319 (-) True G70894
XR_006251840.1 lncRNA downstream 249997 15948113 ~ 15953976 (-) True LOC122352066
TU104518 lncRNA downstream 441304 15762383 ~ 15762669 (-) True G70660
TU104479 lncRNA downstream 559697 15642259 ~ 15644276 (-) True G70633
XR_006251775.1 lncRNA downstream 565537 15628883 ~ 15638436 (-) True LOC122351574
XR_006251709.1 lncRNA upstream 304910 16605367 ~ 16631420 (-) False LOC122351188
XR_006251710.1 lncRNA upstream 304910 16605367 ~ 16617024 (-) True LOC122351188
TU104934 lncRNA upstream 309813 16610270 ~ 16610561 (-) True G70955
TU104935 lncRNA upstream 312660 16613117 ~ 16613424 (-) True G70956
TU104958 lncRNA upstream 330029 16630486 ~ 16715102 (-) True G70967
XM_043249664.1 mRNA downstream 20862 16181754 ~ 16183111 (-) True rpl8
XM_043248627.1 mRNA downstream 87709 16106759 ~ 16116264 (-) False slc5a3b
XM_043248628.1 mRNA downstream 87709 16106759 ~ 16116264 (-) True slc5a3b
XM_043248160.1 mRNA downstream 106907 16092730 ~ 16097066 (-) True casq2
XM_043249466.1 mRNA upstream 32728 16333185 ~ 16418774 (-) True LOC122352003
XM_043249229.1 mRNA upstream 177086 16477543 ~ 16504927 (-) True mao
XM_043249228.1 mRNA upstream 177086 16477543 ~ 16504900 (-) False mao
XM_043248026.1 mRNA upstream 209103 16509560 ~ 16515444 (-) True LOC122351145
XM_043248411.1 mRNA upstream 226068 16526525 ~ 16538075 (-) True efhc2
TU104521 other downstream 432109 15771421 ~ 15771864 (-) True G70663
XR_006251733.1 other downstream 804536 15389849 ~ 15399437 (-) False tmtc4
TU104362 other downstream 897998 15303103 ~ 15305975 (-) True G70549
TU104031 other downstream 1950197 14196479 ~ 14253776 (-) True G70317
TU103993 other downstream 2264105 13938259 ~ 13939868 (-) True G70294
TU104983 other upstream 516683 16817140 ~ 16823694 (-) False G70986
TU104984 other upstream 516683 16817140 ~ 16823775 (-) True G70986
TU105258 other upstream 935415 17235872 ~ 17255491 (-) True G71118
XR_006251863.1 other upstream 2269298 18569755 ~ 18569882 (-) True LOC122352185
TU106113 other upstream 3420041 19720498 ~ 19721737 (-) False ankar

Expression Profile