RNA id: XM_043249462.1


Basic Information

Item Value
RNA id XM_043249462.1
length 1693
RNA type mRNA
GC content 0.40
exon number 2
gene id LOC122352001
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 16233277 ~ 16236288 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tatttaaatgcatacgCAAAGATTAGTCATTTTTAGGTCAGTTTTATTACAGCTAtatattaatagtttaattatCAGTTCATTAAATATGCAACATTGCTAAAAAAATGATACTATTAAATTTCTAAACAAATGCCCGAGTTTGGTGCAAACTGTGccactgaaaatgaaatgttttcagGATGTGGTTGAAAGTAAACGTACAGAGTTCCTATGTCGGGTGCACACCCCACCCACAAAGAGTTTACATACGCACAACATTCTGCAAGTAAAACGTCACGAATATGACTGCGAGTAAAGGAATAAGCATCATGTCTATGCAAGGGAACTTTACAATCAATTGCACCGAAGGAAATAGTATAGTCTGCAATCAAAGTTGCACATGCATGATACAACCTGAAGAAAGTCATAAAACCATCTTGCCTTGGCTCTATCTGGCTTTGGCCATTCTGGGCCTTCCAGCCAATGGAATAGTCTTGGTGGATCTTTGGAGATCAGAGAGGACACCCACTGTCATCTTCACTTTGAACATAATCATATCAGACCTGCTGATGTGCTGcagttttttcttcagaatagCCTACTACAAAGAATACGACAACTGGCAATCTGGAGCTCCAGCTTGCAATGCAGCAGAGCTAATCATTTTTTCATGCTTCTACATAAACCTCTATTGCAACATGTGTTTCCTTTTGTGGACCAGCATTAATCGCTATACCACAGTAGTAAAACCAGGCTACGCCTTATTTCAGATCTTCAAACATACACAGTCTTGTTGGATCCTCTGCTTTTGTACCTGGCTGGTTTTCATCACAGTTGTGGGCACTAGCATGGGGGTCAAAATGAATCTACAAATGAATGGGACCTGCTTTGACCAAGTTGTCAATAGTTATATTCACTATAAAGATCAGTTCAAAACTATCCACTCCTTAGGTGTGTTGACATTCTTCTTCATTTTGTGCTTGATGCTGGTCAGCTATAGCCTGCTGGTCTTCCATCTGCAAAAGATAAGGGGAGGAAGTCTAGTAGGTGCCGGATTTGGGCCTGGAGGAGGTCTGAAGGTTCGCAGGAAGATCCTGGCCTCGGTCATAATGTTTGTACTCTGCTTCCTACCCTACCATGTGCAAAGGATCATCTTATTAACATCAGAGCATAAAAACTGTCAGAAGGAGTACAGGATTAAAACAGGCACCATCTTCATTGCAGCTCTCAGCTGCTGCCTGCATCCTGTCCTCCAGCTGGTGTTTCGTTTGCGTTGCTGTCGGGCCAATCGCAACCAAAGAGTCAAACCAAAGACTGAGATCTCCAAGACCCTGGACACACCTCAAATACATACTATAAATGTGACAGAACATGCTGAAgagtcaaataaaaatgaaaccaaCAACCAACATCAAAATATTGggaaattagaataaaattggATGTACCTTTGCATTTCCTGTGTGATACAAGCAGGAAGCTGTGAAGCATGCTAACCTCAGGGAACTGTTTGCATGTATTACTGTTCACCAAAAGCAACACTTACGGCCAGTGTATAAGGTAGTGTGGCAGCTCAGCATATAGTACATACCACAACAGTGCTTAAAGAATGTGTTGGATATTAATGCCAACTAAACTTAAAGGCTTTGCATTAATGTTTTCGATCTACTTTTGTATCTATTAACTTATAGTATTAAATGTTGCACCAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104670 lncRNA upstream 9337 16222766 ~ 16223940 (+) True G70757
TU104671 lncRNA upstream 10694 16222211 ~ 16222583 (+) True G70758
TU104668 lncRNA upstream 13042 16219897 ~ 16220235 (+) True G70755
TU104660 lncRNA upstream 18050 16213172 ~ 16215227 (+) True G70748
TU104659 lncRNA upstream 22505 16208105 ~ 16210772 (+) True G70747
TU104677 lncRNA downstream 96356 16332644 ~ 16333049 (+) True G70764
TU104679 lncRNA downstream 153358 16389646 ~ 16389915 (+) True G70766
TU104680 lncRNA downstream 216018 16452306 ~ 16452818 (+) True G70767
XR_006251703.1 lncRNA downstream 270432 16506720 ~ 16519350 (+) True LOC122351146
XR_006251704.1 lncRNA downstream 270432 16506720 ~ 16510575 (+) False LOC122351146
XM_043249461.1 mRNA upstream 221 16230538 ~ 16233056 (+) True LOC122352000
XM_043248228.1 mRNA upstream 30138 16197730 ~ 16203139 (+) True nyx
XM_043248213.1 mRNA upstream 35788 16185530 ~ 16197489 (+) False ddx3xa
XM_043249463.1 mRNA downstream 918 16237206 ~ 16239653 (+) False LOC122352002
XM_043249464.1 mRNA downstream 1271 16237559 ~ 16239653 (+) True LOC122352002
XM_043249465.1 mRNA downstream 1271 16237559 ~ 16239653 (+) False LOC122352002
XM_043248770.1 mRNA downstream 304944 16541232 ~ 16580313 (+) False kdm6a
XM_043248772.1 mRNA downstream 304944 16541232 ~ 16580313 (+) False kdm6a
TU104501 other upstream 487171 15734592 ~ 15746106 (+) False plcl1
TU104429 other upstream 522100 15708236 ~ 15711177 (+) False LOC122351678
XR_006251807.1 other upstream 808238 15401128 ~ 15425039 (+) False si:ch211-168k14.2
XR_006251758.1 other upstream 2551286 13676163 ~ 13681991 (+) False ccnt2a
unassigned_transcript_1467 other upstream 2809451 13423714 ~ 13423826 (+) True trnal-caa
TU104743 other downstream 492219 16728507 ~ 16731361 (+) True G70814
TU104753 other downstream 509611 16745899 ~ 16749695 (+) False mpc2b
TU105078 other downstream 680473 16916761 ~ 16919290 (+) True si:ch211-218d20.15
TU105185 other downstream 967509 17203797 ~ 17206505 (+) False jam2b
TU105274 other downstream 1102839 17339127 ~ 17339622 (+) True G71130

Expression Profile