RNA id: XM_043249466.1


Basic Information

Item Value
RNA id XM_043249466.1
length 577
RNA type mRNA
GC content 0.50
exon number 5
gene id LOC122352003
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 16333185 ~ 16418774 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACGTTCCTGGTACTCTGAAGTATCCACGCCGTAATCCGCTGATATATTCACCGTTTGGACGGATTTTTGTGGGGAGTGTAAATTCCCCGGTCTTGTTGGACCATGGCCGACGACGACGTGCTCTTTGAAGATGTTTACGAGCTGTGCGAGGTCATTGGCAAGGGGCCGTTTAGTGTGGTACGAAGATGCATCAACAGAGAGACAGGCCAACAGTTTGCTGTGAAGATTGTGGATGTGGCCAAATTCACCTCCAGCCCTGGCCTCAGCACAGAAGATCTGAAGAGGGAAGCGAGCATCTGCCACATGCTGAAACATCCTCACATAGTGGAGCTTCTGGAGACCTACAGCTCTGATGGGATGCTCTACATGGTGTTTGAGTTCATGGATGGAGCAGATCTCTGCTTTGAGATCGTGAAGAGAGCAGACGCTGGTTTTGTTTACAGTGAGGCAGTAGCCAGTCACTACATGAGACAGATCCTAGAGGCTTTGCGGTACTGCCATGACAACAACATCATTCACCGGGATGTGAAGGTAAGTTCAGTGCTGTCTAGTGCTTTAGATGTCTGCTGACCAAAAC

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004672 protein kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104861 lncRNA downstream 212866 16118282 ~ 16120319 (-) True G70894
XR_006251840.1 lncRNA downstream 379209 15948113 ~ 15953976 (-) True LOC122352066
TU104518 lncRNA downstream 570516 15762383 ~ 15762669 (-) True G70660
TU104479 lncRNA downstream 688909 15642259 ~ 15644276 (-) True G70633
XR_006251775.1 lncRNA downstream 694749 15628883 ~ 15638436 (-) True LOC122351574
XR_006251709.1 lncRNA upstream 186593 16605367 ~ 16631420 (-) False LOC122351188
XR_006251710.1 lncRNA upstream 186593 16605367 ~ 16617024 (-) True LOC122351188
TU104934 lncRNA upstream 191496 16610270 ~ 16610561 (-) True G70955
TU104935 lncRNA upstream 194343 16613117 ~ 16613424 (-) True G70956
TU104958 lncRNA upstream 211712 16630486 ~ 16715102 (-) True G70967
XM_043249460.1 mRNA downstream 32728 16203973 ~ 16300457 (-) False LOC122351999
XM_043249459.1 mRNA downstream 32728 16203973 ~ 16300457 (-) False LOC122351999
XM_043249458.1 mRNA downstream 32728 16203973 ~ 16300457 (-) False LOC122351999
XM_043249456.1 mRNA downstream 32728 16203973 ~ 16300457 (-) False LOC122351999
XM_043249455.1 mRNA downstream 32728 16203973 ~ 16300457 (-) False LOC122351999
XM_043249229.1 mRNA upstream 58769 16477543 ~ 16504927 (-) True mao
XM_043249228.1 mRNA upstream 58769 16477543 ~ 16504900 (-) False mao
XM_043248026.1 mRNA upstream 90786 16509560 ~ 16515444 (-) True LOC122351145
XM_043248411.1 mRNA upstream 107751 16526525 ~ 16538075 (-) True efhc2
XM_043248169.1 mRNA upstream 119594 16538368 ~ 16540651 (-) True fundc1
TU104521 other downstream 561321 15771421 ~ 15771864 (-) True G70663
XR_006251733.1 other downstream 933748 15389849 ~ 15399437 (-) False tmtc4
TU104362 other downstream 1027210 15303103 ~ 15305975 (-) True G70549
TU104031 other downstream 2079409 14196479 ~ 14253776 (-) True G70317
TU103993 other downstream 2393317 13938259 ~ 13939868 (-) True G70294
TU104983 other upstream 398366 16817140 ~ 16823694 (-) False G70986
TU104984 other upstream 398366 16817140 ~ 16823775 (-) True G70986
TU105258 other upstream 817098 17235872 ~ 17255491 (-) True G71118
XR_006251863.1 other upstream 2150981 18569755 ~ 18569882 (-) True LOC122352185
TU106113 other upstream 3301724 19720498 ~ 19721737 (-) False ankar

Expression Profile