RNA id: XM_043249468.1


Basic Information

Item Value
RNA id XM_043249468.1
length 2017
RNA type mRNA
GC content 0.49
exon number 20
gene id LOC122352006
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 7259194 ~ 7268300 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGACCGTGTGCGTCTCGTGCGCTTGTGCGGGTTCATTCTACTCCAGGGGCGAGTGTTATTATAAGGCCTACAATTTAATGCACCTGCATTGAAGGGGGAAATTAATCTGTTGAATTAGAGACCGTGACAAATGCTCTTTTGACGCGTTATTAGCAAATAACACAatccagataaaaaaaatggccGAATTACCGATGGGGAAAGGGGTATCCGCGGGAAAAATAGCAAGcaatgtacagaaaaaaatcacCAGGGCTCAGGAAAAGGTTCTCCAAAAGCTTGGCAAAGCCGACGAGACTAAAGATCTTGCATTTGAAGAAGGTGTGATTAACTTCAACAAACAGCTGGTTGAAGGCACCAAACTGCAGAAAGACCTGCGGGCCTATTTGACTGCTGTGAAAACCATGCACGAGTCTTCTAAACATCTGTACGAGTGCCTGGGTGACATGTATGAGTCTGACTGGTATGGCAGAAAGGACGTGGACTCGCTTTTGGAGgaCTCAGACCTCCTTTGGACAGACTTCCATCAGAAACTTGTGGACCATGCTCTTATATCCATGGACACTTACCTGGGCCAGTTTCCTGACATTAAAGCACGTATTGCAAAGCGTGACAGGAAGCTGGTGGACTTCGACAGTGCGCGGCACAACTATGCTGCGGTGAACAAAGGGAAGAAAAAGGAAGGGATCAAGATCACCAAGCCAGCTTCGTTGCTGGAGAGGGCCGCCCCAGGCTGGGCTCAGGGGATCCTGTCTGCCCATAACGTGGCTCAAACCAGCCTCTCCAGGAGTCAGgCAGAGGAAGAGCTGGAGAGAGCACAGAAAGTGTTTGAGGAGATTAACATAGATTTGCAGGAGGAACTGCCATCTCTGTGGAACAGTCGTGTTGGCTTTTATGTGAACACATTCCAGAGTGTGGCTGGTCTGGAGGAGAAGTTTCACAGAGAAATGGGAAAAATTAATCAAAATCTGAATGATACACTGGACAAATTAGAAAATCAAGATATGTCCAGAAAAACAGGTAGCCAAGGGGTGAGGACATCAACAGCCCAGAAGAGTGACAGGACCCAGGATGCCAATCACACATTGAGCCCTGGAGGACCGCCAGCCATTCCCAAATCACCGTCCAAGCTAAAGCCTGCAGTGCCTCCACCTCCTAAAGTTACACCATCAAAGGATATGAAGCAGGAGAACATTATAAATCTGTTTGGTGAGGCTGCCACACCAAACATCAGTGTCACTTCGCCAACACAGTATGACGCTCCAGCCACTGCTAATCTGCTGGATATGGATCTGGACTCACTTCAGGCTGCCACCACACCAGCTGCACAGaCTTGGGATTCATGGGAGCAAGCAGACAAGGAAGCTGAGGTGCCTCAGACATGGGACGATGATGGTACTCAGCCTGTGCACTCTGGCTGGGGCGATGATGGTACCCAGGCTACCTGGGATGATGATGGTAGCCAACCTGTGCGTGCTCCGGCCGCATACCCCACCTGGGATGATGATGGCTCTCAGCCTGTGCGGGAGAATGAGAATGATTCTACCGAGCAGGCCCAGGGGTGGGACGATGATGGGGCTCAGGGCGCAGAAAAGGTAGCTGTTACAGAAGAGGCAGTAGCTGAAACCGTAAACGAAACTCCACAGGCGACCACCGAGAGCACCGAGAGCACAGAGAGCGTAGAGAGCGTAGAGATGCCAGAATCCTTCCTGTTCAAAGTGAAAGCAATGCACGACTACAATGCCAATGACTCTGATGAGCTGGAGCTGAAGGCCGGAGACGTGGTGCTGGTAGTGAGCTTTGAAAACCCAGACGAGCAGGATGAAGGGTGGTTAATGGGAGTCAAAGAGCCCGACTGGATTCTGCAAAAAGCTCTTGGAAAGAAAGGAGTCTTTCCTGAAAACTTCACCCAGAGGATGTGAGAGCCTGTGATCCGCTTGACCTGTTGTTAATCCTTCTATATAACTCCTTATTGCTTCCCTTCAaaatgcagattaaaaaaaaaaactgtactaca

Function

GO: NA

KEGG:

id description
K12562 AMPH; amphiphysin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101108 lncRNA downstream 105240 7146440 ~ 7153954 (-) True LOC122351350
TU101111 lncRNA downstream 105240 7146440 ~ 7153954 (-) False LOC122351350
XR_006251860.1 lncRNA downstream 223833 6982678 ~ 7035361 (-) True LOC122352164
XR_006251826.1 lncRNA downstream 363797 6892652 ~ 6895397 (-) True LOC122351994
TU101086 lncRNA downstream 376218 6882585 ~ 6882976 (-) True G68357
TU101258 lncRNA upstream 59529 7327829 ~ 7341494 (-) True G68473
TU101275 lncRNA upstream 112990 7381290 ~ 7381508 (-) True G68489
TU101356 lncRNA upstream 546949 7815249 ~ 7818832 (-) True G68555
TU101355 lncRNA upstream 551708 7820008 ~ 7821889 (-) True G68554
XR_006251831.1 lncRNA upstream 1202563 8470863 ~ 8474578 (-) True LOC122352023
XM_043249467.1 mRNA downstream 2581 7248019 ~ 7256613 (-) True slc23a3
XM_043248372.1 mRNA downstream 41186 7215013 ~ 7218008 (-) False mitd1
XM_043248371.1 mRNA downstream 41186 7215013 ~ 7218008 (-) True mitd1
XM_043248350.1 mRNA downstream 49091 7200270 ~ 7210103 (-) True cracdla
XM_043249053.1 mRNA upstream 27278 7295578 ~ 7301529 (-) True desma
XM_043249054.1 mRNA upstream 27278 7295578 ~ 7301528 (-) False desma
XM_043248159.1 mRNA upstream 60782 7329082 ~ 7336383 (-) False dnajb2
XM_043248158.1 mRNA upstream 60782 7329082 ~ 7336383 (-) False dnajb2
XM_043248157.1 mRNA upstream 61804 7330104 ~ 7336386 (-) True dnajb2
TU101110 other downstream 110574 7070985 ~ 7148620 (-) False LOC122351350
TU100887 other downstream 998125 6246900 ~ 6261069 (-) True G68188
TU100850 other downstream 1159311 6099347 ~ 6099883 (-) False LOC122351979
TU100782 other downstream 1215269 6043275 ~ 6043925 (-) True G68124
TU100767 other downstream 1336374 5919757 ~ 5922820 (-) False LOC122351463
TU101496 other upstream 746149 8014449 ~ 8018105 (-) False LOC122351623
XR_006251804.1 other upstream 810836 8079136 ~ 8094847 (-) False als2a
unassigned_transcript_1465 other upstream 1072643 8340943 ~ 8341015 (-) True trnak-uuu_106
TU102057 other upstream 2639888 9908188 ~ 9910178 (-) True LOC122351483
XR_006251819.1 other upstream 3165207 10433507 ~ 10441872 (-) False trim13

Expression Profile