RNA id: XM_043249474.1


Basic Information

Item Value
RNA id XM_043249474.1
length 1926
RNA type mRNA
GC content 0.49
exon number 1
gene id sox1a
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 14338698 ~ 14340623 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTCATTTTAATCGCTGTCAAAACGCATCATATGGCCGCCGCTTTAACTAACTCTTCAACTCCACTAGGAAAAGTAACTCAAATGCACGTTCAATTAATGTGGATGTGAAACGGCAGTCGGAGACGACACTAAACACGCTACGGGAGCAAAAAGAGACCCCGAGACTAACGGCGAACGTTTGGGAATAAGCAAAAATCCACACTTCACCGGAGCTCCACGGGCTCGTGAGGCACCTGCTTCAAGCGCGGACTACAGAGCGCCGAAAGTTCATGCTTTTTCTCTGCTAGCTGAGAACTTCTAAGCCACTTGAATGTATAGCATGATGATGGAAACGGACCTTCATTCCCCGGGACCCCAAACCAACACGAATCCGGGGCAAACGGGTCCAAACTCGGGGAGCAAAGCCAACCAAGACCGCGTAAAGAGACCCATGAACGCTTTTATGGTGTGGTCCCGGGGCCAGCGGCGAAAAATGGCTCAGGAGAACCCCAAAATGCACAACTCTGAAATTAGCAAAAGACTCGGTGCTGAGTGGAAGGTGATGTCAGAGGCTGAAAAGCGGCCCTTTATTGATGAGGCGAAGCGGTTGCGCGCCATGCACATGAAGGAGCATCCGGATTACAAATACAGACCGAGGCGCAAAACCAAGACCCTGCTTAAAAAGGACAAGTACTCGTTGGCTGGCGGCTTGCTTGGCGGCGCGGGTGGCGGGGTCGGGATGAGTCCTGCAGGGGTCGGCCAGAGGTTGGAGAGTCCTGGGGGTCACGGAGGCTCGGCCGGCGCTGGCTACGCGCACATGAACGGCTGGGCGAACGGCACTTACTCGGGCCAGGTGGCCGCCGCGGCAGCAGCGGCTGCGATGATGCAGGAGGCGCAGCTCGCCTACAGCCAGCACCCGGGCAGTGGGTCCCACCATCACCACGCTCATCACCATCACCCGCACAACCCCCAGCCCATGCACCGCTACGATATGACCGCTCTCCAGTACAGCCCCATCTCGAACTCCCAGAGCTACATGAGCGCTTCTCCATCCGGCTACGGTGGGATTTCATACACGCAGCATCAGAACTCCAGCGTCGCTTCTTCTGCCGCCATCGGTACGCTGAGCTCGCTCGTCAAGTCCGAACCCAATATAAGCCCTCCGGTCACCACACACTCCCGAGGCCCCTGCCCCGGAGACTTGAGAGAGATGATTAGCATGTATTTACCGACCGGCGAGTCCGGGGATCCGTCCGTGCAGAGCAGACTGCATGCCTTACCGCAGCACTATCAGAGCACAACCGCCGGAGTAAACGGAACTGTCCCATTGACGCATATTTGAAAGAGCTGATGGAAAGCGATGGGTAACGCGCATTCAGAAACACTCCACCAAATATATTTACCTCTTTTTTTAGATTGTCATCGAACTACTTTTGTACAGAATGTTTTATGATGTTCTTGTAAATTAAAGGTAAATATTGTTTCGACTGCAGTTCGGAGAGAAACTGAGATCTTATCAAATGTATCACTTTCAGtgaaacattgtttaaatatgacgtctttaaaaatgattctgaCAGCGTTTCTGGCCACGCCAAGAAATATGCGACATACTGTTATTCTTTCAATATTTAAGTTTCTGTGCAAAATTGACTTTTGAGTTGATAATAACAAAAGTCTAGCGTGAATAActcaatgaaatgttttttttttttgagagccCATAAAGAGTTTCCTGCTTATTACATTTACCAAAACGTTTGTACACGTGAATTAATGTACCAGATTTATGTTGTAATATTTCTTGTAAATTGTGaataagttttaatatttcaaaaagacTGGCACGTCACTGCTGCTGTAAATAATTTATGACATGCATTCCTGCCAGTTCAAATCTTAACCTTGCGTTGATTCATGGTCTAAATAAAATTGGAGAAAAAGTTA

Function

GO:

id name namespace
GO:0007275 multicellular organism development biological_process
GO:0051091 positive regulation of DNA-binding transcription factor activity biological_process
GO:0005634 nucleus cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09267 SOX1S; transcription factor SOX1/3/14/21 (SOX group B)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104049 lncRNA downstream 91370 14244287 ~ 14247328 (-) True G70332
XR_006251857.1 lncRNA downstream 149697 14173817 ~ 14189001 (-) True LOC122352120
TU104012 lncRNA downstream 413862 13924616 ~ 13924836 (-) True G70309
TU104011 lncRNA downstream 414594 13923749 ~ 13924104 (-) True G70308
TU103898 lncRNA downstream 443238 13891346 ~ 13895460 (-) False rif1
TU104075 lncRNA upstream 22416 14363039 ~ 14372674 (-) False LOC122351495
TU104117 lncRNA upstream 136709 14477332 ~ 14562992 (-) True G70382
TU104132 lncRNA upstream 249235 14589858 ~ 14590275 (-) True G70393
TU104140 lncRNA upstream 253640 14594263 ~ 14595342 (-) True G70396
TU104139 lncRNA upstream 253801 14594424 ~ 14595342 (-) False G70396
XM_043249542.1 mRNA downstream 32414 14290849 ~ 14306284 (-) False rev1
XM_043249541.1 mRNA downstream 32414 14290849 ~ 14306284 (-) True rev1
XM_043249471.1 mRNA downstream 48470 14287287 ~ 14290228 (-) True txndc9
XM_043249609.1 mRNA downstream 53168 14283602 ~ 14285530 (-) True zgc:162944
XM_043248299.1 mRNA downstream 61032 14275569 ~ 14277666 (-) True kctd12.1
XM_043248573.1 mRNA upstream 19023 14359646 ~ 14372674 (-) True LOC122351495
XM_043249736.1 mRNA upstream 67954 14408577 ~ 14426806 (-) True arhgef7a
XM_043249737.1 mRNA upstream 67954 14408577 ~ 14426805 (-) False arhgef7a
XM_043249732.1 mRNA upstream 67954 14408577 ~ 14426805 (-) False arhgef7a
XM_043249733.1 mRNA upstream 67954 14408577 ~ 14426804 (-) False arhgef7a
TU104031 other downstream 84922 14196479 ~ 14253776 (-) True G70317
TU103993 other downstream 398830 13938259 ~ 13939868 (-) True G70294
TU103924 other downstream 525371 13807822 ~ 13813327 (-) True G70261
TU103524 other downstream 843053 13473140 ~ 13495645 (-) False gypc
TU104362 other upstream 962480 15303103 ~ 15305975 (-) True G70549
XR_006251733.1 other upstream 1049226 15389849 ~ 15399437 (-) False tmtc4
TU104521 other upstream 1430798 15771421 ~ 15771864 (-) True G70663
TU104983 other upstream 2476517 16817140 ~ 16823694 (-) False G70986
TU104984 other upstream 2476517 16817140 ~ 16823775 (-) True G70986

Expression Profile