RNA id: XM_043249485.1


Basic Information

Item Value
RNA id XM_043249485.1
length 1947
RNA type mRNA
GC content 0.40
exon number 8
gene id LOC122352014
representative False

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 10836088 ~ 10839687 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCAAATAATAGGCTATTGTCAGAACTGTCATATTGAACGAGTCACAATTGTGTGCGTAGACAAATGAATACACAAAAAAGGAACATTGTCTGTTATGTATTGTAAAGAATGTTTTCTTCCTTTTTGAACTGTATAAGCAATGCAATTCCAGCTGCAGGTCCAGATGTGCTGAAAATTTGTTTGCTAAAACATTACCAGAAGCAGTCGTCGAGCGGTGACAATTACTCAATGAGCGATACTTCATCTTCCTCCCAGAAATAAGACTGAATACAACAACATGCGTATCATctctgtttttataataatgttaagaAGTGGGTTTTGTCACAAATCTGGAGATGTCCAGCGTGGATCTGATGTCTCTTTGAGATGTGACGTCCCTTTCCTGTCTGAATCCTCCACATTACACTGGGAGAAAGATGGAGAACAAACATCCAACACCACACTGATGTACAACAACTCTGCCTTCATCATCTTACACACCGTTGATGAACACAGTAAAGGGAATTATTACTGTATTCTGACCAAAGAAGGAAGTGTAGAAACTGTTAAGAGACACACACTTACTATTGCTTCAAATTCATACAATGAGAAATCAAAAGCTTTTCTCATTTACAGACAAAGCTCCAGTAACAGTGAAGTATTACTGATCTGTAAATCTAGAAAGGTATATGAGAACTTGAAGTGGACCTGGGCACCGAGGCCTGATTCACAGATTGATCTGATAGCttttaaacacagaaaacaagttcAGTTAAAAGGACCAATTAAACCGGGGAGACGTTCTTCAAAGGAATACGACAGTCAAGCTTTGATCTTTCACGTCTCACCTGTGAAGTTCAATTACAGTGGGACATACAGGTGTATTACAGAAACAACCACCTACACAACAATCATACTACACACCATCAGAGTGTCAGTGGAGCCCTCTGATGGTGTGTTGATGAATCAGTCAGTGGTTTTTACCTGTCAGCTTTCTGAAGTAACTGGTTCAGTGACGCTGGTCTGGCTCAGGATGGAGGGAAACAGAGGAGTGCTGGTCAAACAGCAAATGATGactgaaaaaaaccaaaagttACAACTCACAGTGAATGTCTCCAGCTATGAATCAGACCTGATGAACTGGCAGTGTGCAGTTTTTACAGAGAATACACTCAGAGCTCTGGCCCCTGTGACCAACTACAGTCTTACCTCAACAGCTACAAATGAACCAGACATATCAACAGAAACCTCAACTGGAACAAACAAAGAAGACAGCGTGACACAGGACAGTCATCCACAGATCGCGATCAGCGTGGCTTGTGCTGTCAGTGTGCTGATTCTGCTGGGGCTTCTAGTTTTTACATGTCAGCGAAAAACAGGTCACATCGCTGGGTTAAAATCAGAAGAAGATGAGGAGATCCATTATGCTTCAGTGACAGTGGCCGGATCTAATCAGGGAACTGACAGCtggttaaaaatgaaacaagcaAGTTCAGAGGTCTGCTGTCAAACACCTTGTTTCACAAATATCTTAGATTGTCATCCAGATTTGATGCATGGTATATATGTTTGTGCTACAGTAAGCACAATCTTATATTTCTCAATTTTCAGGCGCTGGACAGAAAATCTGAAGTCATCTACTCAGAGATTAAAGCAAAGTGAACATTGCCACTGGAAGCTTCATACATTGTATATACTTATTACTGCATATACAGCATTATTGTGGTATATTAAAGCATTAGACTATAGCAAAGTATTACATCTTCTGTGCTCTGTCTGTAAGCAAGGGGTCTCTGGGTTTCACTTGCATTGAAAACACAACTGCAACACCAACATAAACATAAAGAGATCAATATGCTCTCATACTAGAAAAAACCTCAGTGTGGTTTCATGACACGCAACTGTGTTAAAGAACGGTGAACGGTGTTTCCTGGAATGGAACAAGATAAGATGATTAAGTTTTgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU102528 lncRNA upstream 1406 10833788 ~ 10834682 (+) True G69340
XR_006251705.1 lncRNA upstream 21469 10803860 ~ 10814619 (+) True LOC122351147
TU102469 lncRNA upstream 49626 10786176 ~ 10786462 (+) True G69286
TU102468 lncRNA upstream 51489 10784362 ~ 10784599 (+) True G69285
TU102467 lncRNA upstream 52386 10783465 ~ 10783702 (+) True G69284
TU102559 lncRNA downstream 83462 10923149 ~ 10923477 (+) True G69355
TU102562 lncRNA downstream 101621 10941308 ~ 10941524 (+) True G69358
TU102581 lncRNA downstream 189693 11029380 ~ 11030402 (+) False creb1b
TU102625 lncRNA downstream 223914 11063601 ~ 11090434 (+) True G69403
TU102659 lncRNA downstream 360964 11200651 ~ 11201165 (+) True G69417
XM_043249680.1 mRNA upstream 54835 10757241 ~ 10781253 (+) True ramp1
XM_043248756.1 mRNA upstream 80203 10729162 ~ 10755885 (+) False epb41l5
XM_043249483.1 mRNA downstream 2753 10842440 ~ 10849801 (+) True LOC122352013
XM_043249480.1 mRNA downstream 6600 10846287 ~ 10849801 (+) False LOC122352013
XM_043249482.1 mRNA downstream 6604 10846291 ~ 10849800 (+) False LOC122352013
XM_043248487.1 mRNA downstream 114505 10954192 ~ 10996056 (+) True klf7b
XM_043249647.1 mRNA downstream 182049 11021736 ~ 11030409 (+) True creb1b
XR_006251850.1 other upstream 440858 10328731 ~ 10395230 (+) False il1rapl1a
XR_006251853.1 other upstream 1279441 9443125 ~ 9556647 (+) False thsd7ba
XR_006251841.1 other upstream 1686422 9142592 ~ 9149666 (+) False si:ch1073-416j23.1
XR_006251842.1 other upstream 1686427 9142592 ~ 9149661 (+) False si:ch1073-416j23.1
TU101764 other upstream 1970191 8864649 ~ 8865897 (+) False cryba2b
TU102754 other downstream 643750 11483437 ~ 11489996 (+) False LOC122352020
TU102836 other downstream 1206812 12046499 ~ 12155804 (+) True G69527
TU103038 other downstream 1787848 12627535 ~ 12629535 (+) True G69670
XR_006251865.1 other downstream 1891149 12730836 ~ 12730962 (+) True LOC122352187
TU103102 other downstream 1892946 12732633 ~ 12741060 (+) False LOC122351618

Expression Profile