RNA id: XM_043249493.1


Basic Information

Item Value
RNA id XM_043249493.1
length 3306
RNA type mRNA
GC content 0.46
exon number 20
gene id vil1
representative False

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 22622058 ~ 22635997 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCTGGTTAATGAGTTTGAGCAAGGAGAGGGGAGCGGCCACATTCTGGAGACTGAAGTTCACCTAGAGACAATCTGAAAGTGAACCAATCTGAAAGGACAGGAACCTTACACTCGGCTGCCAAGGACAGAAACACCCTGTCTAAAGAAGGTATTTCCTTGAGACTTAAGCTGGCACCATGCCACAGGATGTCAAGACCGATGTTCCCAAAGTCCTCAACAAAACCACACCAGGACTGCAGATATGGAGAGTGGAGAACATGGAGCTCGTGCCCTGTCCACCTAATTCATATGGGCAGTTTTTTGAGGGGGACAGCTACGTAACTCTCTACACTCACAAGACCAGCAACAACTATACCTACGACATCCATTACTGGCTGGGCAAGGAGACCTCTCAGGATGAGCAGGGAGCAGCAGCGATATACACCACGCAGATGGACGATCACCTAGGGGGCGCTGCTGTGCAGCACCGTGAGTGCCAGGGCCACGAGAGCGCCACCTTCCAAGGATACTTCAAACAGGGCATCATataCAAAAAAGGTGGAGTTGCATCTGGGATGAAACAAGTGGAGACGAACACATACAACATTCGCAGACTGCTGCATGTGAAGGGAAATAAGCATGTGGTTGCTGGAGAGGTGGAAATGAGATGGGACAGCTTTAATCAAGGTGACGTGTTCCTGCTGGACTTGGGGAGCCTGATCATTCAGTGGAATGGACCCAAGAGTAACCGAATGGAGAGGTTAAGGGGGATGAACCTAGCGAAGGACATTCGTGATCGAGAGAGGGGTGGACGAGCGCAAGTGACTGTAGTGGAAGGAGATAATGAGGACTCTTCAGAGGAAGCGATGAAACTGATGATTCAGGCAATGGgggagaaaaaacaaatcaaagaagCCATCCCAGATGAAATTGTGGATGAAAAACTCAAGACTGCCATTAAACTCTTTCATATTTCAGATGCTCAGGGGAACCTTGTAGTCCAGGAAGTGGCAGTGAAACCTCTCACACAAGACTTACTGAAAACCGAGGACTGCTATCTGCTGGATCAGGGCGGAATAAAGATTTTTATCTGGAAGGGCAAAAAGGCATCGAAAACTGAGAGAGCCGAATCTCTGAAGAAAGCAGAGGCCTACATAAAGGCAAAAGGATATCCTACGTCCACCTATGTAGAGACAGTAAGCGAAGGAGCAGAATCATCGGTGTTCAAACAGCTCTTCCAGAAGTGGACGGAAAAAGGACAGACAGTTGGATTGGGCACCACTCACAGTCCAGGGAAAATAGCCAAGGTTGAGCAAGTCAAGTTCGATGCCACCTCAATGCATGCTAGGCCTGACTTGGCTGCACAGCAGAAAATGGTGGATGATGGGTCAGGCGAAGCAGAGGTATGGAGGATAGAGGACAATGAGCCCGTACAAGTGGAGAGGAAGTGGCTTGGCCATTTCTATGGTGGGGACTGTTACCTCATTCTCTACAAATATCAAGTCAATAGCAAACTACACTACATTCTTTACATGTGGCAAGGCCGTCATGCAAGCACGGCGGAGCTGACAGCTTCTGCATATCAGGCTGTGATCCTAGACCAGAAGTACAACGGAGAACCAGTACAGGTCCGCGTTCCCATGGGAAAGGAGCCTATGCACCTAATGGCCATTTTTAAGGGTAAAATGGTTGTTTATGAGGAAGGAAGTTCCAGAGAAGGCTCCTCCCATTCTCAACCATCAGTAAGACTGTTTCACGTCCATGGAACAAATGAATTCAACACACGTGCTGTTGAGGTGCCTCCGCGCTCATCTTCTCTGAACTCCAACGATGTGTTTGTGCTCAGCACGGATAAATGCTGCTACCTGTGGTACGGCAAGGGCTGCAGtggagatgagagagagatggcCAAAACGTTGGCTGACATCATCTCCAAGAGGGAGAAGAATGTTATTGCAGAGGGTCAGGAACCGGCTGACTTCTGGGTAAACCTTGGTGGAAAGTCGCAGTATGCCAGCAGCAAAAGACTTCAGGAGGAAAACAGCAGTATCTCTCCTCGGCTGTTTGAGTGCTCCAACCAGACAGGACGCTTTATAGCAACAGAGATTACGAACTTTAACCAAGATGATCTGGATGAGGATGACGTGATGTTGCTGGACATCTGGGATCAGGTTTACCTGTGGATCGGCAAAGGTGCCAATGACAAGGAGAAGCATGACGCAGTGGTTACAGCGCAGGAATATCTGAAGTCTCATCCTGCAGGGCGTGACCTGGATACACCTATCCTGGTGGTGAAGCAAGGGTTTGAGCCACCTACTTTTACAGGCTGGTTTCACGCCTGGGACCCACAAAAGTGGAGTggTGGGAAATCTTACGACCAGCTTAAGGCAGAGCTTGGCACTGCAACCGATCTTATAGAAATTACTGTGGATCTGACCAAACCAACCTCAAACCAAACCAACTCAAATAATACAACTCAAGGGGGTAACTTACCCCGTCCCGTGACGCAAACCTTCCCTGCAGAGAATCTGGTGAACGTTCAGACAGAAGACCTGCCTAATGGAGTCGACCCGACAAGAAAAGAGGACTATCTCTCAAACGACGACTTTAACCTGATCATGGGGATTTCTCGGATTGATTTCTATGCCCTGCCATCCTGGAAACAGCTGaacatgaagaaagaaaagggCCTGTTTTAGGATGGGCACAAACACATTCCCGTTCTGCAAAACAGACTTCCTCTCATGCTAAACTTTATGAATGCTAGTAGTGGTGCGATGCAAATACACTACATTCAGGATCATTTCCTTCtagatttttttagatttattgtttacatgtttaattactttatttaaatgtgttgttttgcacatgcaaattgatttatttgaaattgccttatattataaaacagaatgaatTACTTTAAGAGTATgatttttaacagaaaatatgGATGATATGGGAAAATTAAGTTtgcaattctgtcttttttacaCAGGGATTTGTATTAAAGCGGCATGGTAAACTTTCAATGTAATCTTTCCTTAATGCATCTCGAGGGGAAACCTTCAAGCACTGACTAAAAGCTGCTTTATACTTAAGTGGCTTAAGCACTacaataaattttaatatatttcaagaaAGATAAAAGTTTTATGTGAGGTTAATCATGCATACTTGGTATTAATTCTAACAGACACTTGGAGACTTCTGTGTACTGCCTAATGTGTAATTTCCATTGGTATTAATCATTTACTGCATACAAGAGGCACACCACCTGTCTAATGGAAAAGTCAATAAACAGGAAAAGACTCACTGTAA

Function

GO:

id name namespace
GO:0007010 cytoskeleton organization biological_process
GO:0003779 actin binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251847.1 lncRNA downstream 33807 22585744 ~ 22588251 (-) True LOC122352087
TU107400 lncRNA downstream 41286 22579803 ~ 22580772 (-) True G72583
TU107338 lncRNA downstream 163300 22311078 ~ 22458758 (-) True G72535
TU107333 lncRNA downstream 176563 22297050 ~ 22445495 (-) False LOC122351746
TU107436 lncRNA upstream 16505 22652502 ~ 22653575 (-) True G72605
TU107432 lncRNA upstream 22320 22658317 ~ 22658828 (-) True G72603
TU107440 lncRNA upstream 30900 22666897 ~ 22667111 (-) True G72608
TU107450 lncRNA upstream 64732 22700729 ~ 22701019 (-) True G72615
TU107487 lncRNA upstream 192101 22828098 ~ 22891619 (-) True G72646
XM_043249032.1 mRNA downstream 1270 22616864 ~ 22620788 (-) False LOC122351761
XM_043249031.1 mRNA downstream 1270 22616864 ~ 22620788 (-) True LOC122351761
XM_043249030.1 mRNA downstream 6277 22611358 ~ 22615781 (-) True LOC122351760
XM_043249029.1 mRNA downstream 11989 22597828 ~ 22610069 (-) True dnajc10
XM_043249423.1 mRNA downstream 80348 22537975 ~ 22541710 (-) True dusp19a
XM_043249090.1 mRNA upstream 898 22636895 ~ 22645747 (-) True itgb2
XM_043248246.1 mRNA upstream 266451 22902448 ~ 22906312 (-) True agr1
XM_043249636.1 mRNA upstream 369841 23005838 ~ 23244247 (-) True hdac4
XM_043249637.1 mRNA upstream 369841 23005838 ~ 23111800 (-) False hdac4
XM_043249638.1 mRNA upstream 369841 23005838 ~ 23111599 (-) False hdac4
TU107329 other downstream 110751 22459396 ~ 22511307 (-) False LOC122351746
TU107316 other downstream 315045 22299172 ~ 22307013 (-) False LOC122351746
XR_006251764.1 other downstream 398391 22171463 ~ 22223667 (-) False cerkl
TU107092 other downstream 895238 21709288 ~ 21726820 (-) True G72363
TU106615 other downstream 2118168 20489164 ~ 20503890 (-) True G71938
TU107929 other upstream 1294210 23930207 ~ 23931329 (-) True G72930
TU107931 other upstream 1320222 23956219 ~ 23960325 (-) False grb14
TU108001 other upstream 1584525 24220522 ~ 24280708 (-) False G72978
TU108002 other upstream 1595238 24231235 ~ 24280708 (-) False G72978
TU108000 other upstream 1635458 24271455 ~ 24280708 (-) True G72978

Expression Profile