RNA id: XM_043249495.1


Basic Information

Item Value
RNA id XM_043249495.1
length 2118
RNA type mRNA
GC content 0.51
exon number 2
gene id LOC122352021
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 11454069 ~ 11464414 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GATTGCCTCCAAATGACGTTAATATTCCCTTTACAGGATTTCCCACAAAGTGATATGGCACAAAGATTGCACAGAGCAAAGAACTGCGAAGAACATAATGGCATGCACACAGAGAATTCTCTCAGCAGTGGCGACACTTTATTGCTGAATATAGCGGAGCGCTGGACTGGGACCAGGTGCAGATGAAATTGTTTGCGTGCAACGAAAGAGCTCGCGCTATACCGTCTCATTGACATCATTCGCATCATCCCGCCGATGCGCGTCGCGAGATGGATGGAGAGCACGCTCTCATCGCGAGTGCGCGGAGATTCCGCAGACTAAAACAGAGCAACGAGGCAATTCAAAGCGTTTCATCTGAACGCGACGAGCAAACGTTGGCATTTTGAAGccttgcactttatttttaccACGATGTTCGGTTCTTAAACAGCCTTTGGTTACGCGTTTTGTTCGGTGACTTACACTTTGTTCGCAACTTTGCGAGAgagcaagttttttttcttatgtgatGTCTTGGATGTCACACTTCTGCGCATCTTTTTTACCATATCAACATGTGGCATGGGTTTTTTGGGCTGGATCCCACGCGGACGTCCTGGAGGAAGACCTGGAGAGGAGATCATGATTCACACTAACTGCATGAAGAATTTCCttgtgttaaaatgaatgagaaacCCAACAAATGGATTTTCATCCCAATTTTAGCCATTCTTTTTGTCATGATTGGGTACCAGTATATTTGTCCGGCGGGCGGCCAGGCTTGCCATTTCAGGACAGGAGACAAACTCGTTAGGATCGGTCCCCCGTCCACTCCAGACCCGACCACCGATGACCCGGAGGAAGACAGCCCAACTAAATGTGCGTCCAAATTCAACTTCACGGAGCGCGATCTGACACGCGACGTCGATTTCAACATCAAGGGAGACGATGTGATTGTGTTTCTGCACATTCAGAAGACAGGCGGGACCACCTTCGGCAGGCACCTGGTCAGGAATATCCGCTTGGAGCAGCCGTGCGACTGCAAAGCGGGACAAAAGAAATGCACGTGCCACCGGCCCGGCAAGCAGGAGTCATGGCTCTTCTCGAGGTTCTCCACGGGCTGGAGTTGCGGATTGCACGCGGACTGGACGGAACTGACCAACTGCGTGCCTGTGATAATGGACAAAAGGCAGCCTCCAAAGCGCAAGAGAAAGTTCTATTACATCACTCTGCTGAGGGACCCCGTTTCCCGCTACCTTAGCGAATGGAGGCACGTCCAACGAGGGGCGACGTGGAAGACGTCCCTCCATATGTGTGACGGACGGACACCAACGCCCGAAGAGTTGCCGTCCTGCTACGAGGGCTCAGACTGGTCGGGGTGCACATTGCAGCACTTCATGGACTGCCCCTACAACCTCGCCAATAACCGTCAAGTACGCATGCTGGCCGACCTCAGCCTGGTTGGATGCTACAACCTCTCCACTGTTCCCGAGAAGAGGCGCTCACAGCTGCTGCTGGAATCGGCCAAGAAAAACCTACGAGACATGGCTTTCTTCGGCCTGACGGAGTTCCAGCGGAAGACTCAGTACTTGTTCGAGCGCACCTTCCACCTCAAGTTCATTCGGCCTTTCATGCAGTACAACAGCACGCGGGCAGCCGGCGTGGATCTGGATAACGACACGATACAGCGCATCGAGGAGCTCAACGACCTGGATATGAAGCTGTACGACTACGCCAAAGACCTGTTTCAGCAGCGCTACCAGTACAAGCACATGCTGGACCGCCGGGAGCAGAGACTACTGAGAGGACAGGCGTCTTTCCACAGTCCGTTCCGAGAGGACGGAGCCGGAGGAGAGGGTACAGCACGCCTGCCAACCGAGGACTACATGAATCACATCGTCAACGGATGGTAACCGCCCACCCCTCTCCAGAGAGACCAAAAAAGTGACACAGTTACAAGGAGAGGGGGAATAAACAGACCCAAGTGGAATATCTATTCCCAGATGGGAGAGTTCAATGTCCCAATCTTTGGGTGGGAATATGGGACCAGGAACGTTCAAGAAATGCGTTTCGCTTAGTGCCGCATCTCataggcctttttttttaaacacataacattaatattaaattattatcttt

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component
GO:0017095 heparan sulfate 6-O-sulfotransferase activity molecular_function

KEGG:

id description
K02514 HS6ST1; heparan sulfate 6-O-sulfotransferase HS6ST1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU102742 lncRNA downstream 88250 11358950 ~ 11365819 (-) True G69467
TU102615 lncRNA downstream 423576 11029377 ~ 11030493 (-) True G69396
TU102576 lncRNA downstream 500084 10947044 ~ 10953985 (-) True G69362
XR_006251755.1 lncRNA downstream 507325 10939979 ~ 10946744 (-) True LOC122351427
XR_006251827.1 lncRNA upstream 326367 11790781 ~ 11954234 (-) True LOC122351998
TU102924 lncRNA upstream 621300 12085714 ~ 12156439 (-) False G69596
TU102926 lncRNA upstream 621300 12085714 ~ 12156439 (-) True G69596
XR_006251707.1 lncRNA upstream 803698 12268112 ~ 12270147 (-) True LOC122351183
TU102946 lncRNA upstream 815379 12279793 ~ 12280197 (-) True G69607
XM_043248236.1 mRNA downstream 49773 11400551 ~ 11404296 (-) True gtpbp8
XM_043249224.1 mRNA downstream 54854 11396666 ~ 11399215 (-) True LOC122351858
XM_043249222.1 mRNA downstream 57406 11392240 ~ 11396663 (-) True LOC122351856
XM_043249223.1 mRNA downstream 64691 11386377 ~ 11389378 (-) True tlr20.4
XM_043249309.1 mRNA downstream 222381 11225956 ~ 11231688 (-) True lcmt2
XM_043248275.1 mRNA upstream 32533 11496947 ~ 11500495 (-) True LOC122351308
XM_043249140.1 mRNA upstream 518554 11982968 ~ 12000692 (-) True efnb2a
XM_043248593.1 mRNA upstream 539590 12004004 ~ 12009937 (-) True arglu1a
XM_043248386.1 mRNA upstream 626717 12091131 ~ 12189651 (-) False gtdc1
XM_043248384.1 mRNA upstream 696088 12160502 ~ 12194961 (-) False gtdc1
XR_006251823.1 other downstream 767442 10680158 ~ 10686627 (-) False mrasa
XR_006251803.1 other downstream 934612 10515272 ~ 10519457 (-) False fdx1
XR_006251819.1 other downstream 1012197 10433507 ~ 10441872 (-) False trim13
TU102802 other upstream 32596 11497010 ~ 11499372 (-) False LOC122351308
XR_006251743.1 other upstream 702577 12166991 ~ 12189656 (-) True gtdc1
TU102995 other upstream 958015 12422429 ~ 12423446 (-) True G69650
TU103144 other upstream 1244217 12708631 ~ 12711824 (-) False LOC122351186
XR_006251867.1 other upstream 1273630 12738044 ~ 12738171 (-) True LOC122352189

Expression Profile