RNA id: XM_043249501.1


Basic Information

Item Value
RNA id XM_043249501.1
length 3870
RNA type mRNA
GC content 0.47
exon number 23
gene id ttf2
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 9658403 ~ 9669522 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGTGTACAAAACTTACCTTTGTAAGAACAGCTTTCTTCAGAGTACCACAGTTACTCCTTTATTGTTACTGGTGCAGAACGTCAGTACAGTAGTCTCAGTAAACATTTATTGGCTACAGTGCAGGTTGCGTCATCAAGCCTGCGACAGCGGCGGGTATTTGTGTGCATAGTGAAAGTGAAGCCGGTAATTTAACAGAAACAGGGCGCCGTCGTAAAATGGAAAGAGTCCCGTGTGAAATACACGGCAGTACGTGCTTACTGAAGACCGGTGTAAAGGAAGGACCGAATAAGGGCAAAAGTTTTTATATGTGTACTGCGCGTGATGCAACACCCTGCAACTTCACACTGTCTACAGAGATCCCACCATCTCACTGCCTTCAGCATGAGGACGTCATGGTTGAACTTCAAACACTAATATACAATGAAAAACAGGACAAGTACAAGTTGTTTTATCGCTGTACGCTTGGAAAATCTGAAGGACAGAAGTGGTGTGGTTGCGTTCCGTGGAAAGAGAAAGACTCTGAGAAAAGCACTGATTTGTCAGAGAAAGATCTTCAATCCTCAAGCTTCACTCCTGTCAGAAACCCTTTCAAAGTCAAGACAAAACCGGACAAATCTTCAGAACGCAAGAGGGATCCAGAGGCTGAAAAGGATAAGGGAGAGATAAATGGTGATGATAAACATGTGAACGGTAAAAAGGATAGTAGtgctaaaaagaaagaagggcgTTCCAAGACAACAGAGACTGAAAGGAATAACAAGAATGGGTCAGATGGTGAAAGCGGGTTGGACAGAGAGGGGAAAGACTCAGAGTCTTGGAGGAACAAGAAACTTCCCACTGGGATGAAGATAAAGAAGAGAACGTCTGATGATGAGAGACTGAGGAACACAGCAGAGGACGGGGCATGTCCTGAGAGTCCAAACTGTGTGAATGAAAGTATACCAGGACAGAGTGAATCTGAGACCAGCCTCAAACACCGGCAGGAGACGAAGCCTACAAAAACAGGCGGCTCTGCACAAAGCCCTTCAAAGGGTTCAACGGGATGTGATAAGAAAGTTTCAGAAGAGAACGAAACAAAGGATGACCACTCAAACAAGCAAAGCACTGCTAATTCAAAAACGGTTACAGATAAAGCTCAAAGCCTGCAGAGCAAGAGCAGCTTACCCTCATGCTCCGCATCACAGGATCTGCCAGTTTCTGAAAAACCCAAAGCACTTAATGTTCAGAAGACAGTCCAGGATAAGGACCAGAAAGGCATGGCGCGGTTCGGTGAATGGAGTGATGAGGAGGATGATGTTCAGCTGGTGTCGGTACAGCCTCCCACCCAGAAGAGTGGTCCGACTCCAGCTGCACCTGTTCAGAAAACACTTACCTCTTATCCTGGTTTCCAGACTGCTTCTAAAGGCCAGGGGCAGTCTGAGGACCCTAGGGCCCTGCACAGCCATCTCACGGCCCAGCTCAAGCAGAAGAAGGCCACTCTTTCAGTGGTGAATGTGTCAGCTCTGCCAGATAAAGGAGAGCGTTTGAAGAGTCAGGTGAAGGAGCTAGAAGAGGCTCTGGAGTCTCTGAGCCTGACTGCAGGTTCTGTCTTTGAGTCCCAGGATAAAGATAAATCAGAGGCCGAGCATAAATCAGCACACAACCATTCAAACCCATTCAGTCGTCCTGGAAGCACCATCCTTCTGCCCACAGCTTCAGCTCCCATGATGAAGGAACCCTCTAGCAACTCACTGGGTCTGAACCTGAGCCAAGGCTACTCCCAGATGTTTGGAGTGAATCCCCAGAGCCAGGCTTTCTATGGTGGCAGGATGACTGAGAACAGACTGCTGGCAGTCCGCAATGCCACCACTGAAGCCATCGACCATCTGCACAACTCGCTGGAGTCCTGCCCTACAGAAGACACTGAGGCACCAGATCCTAAAGGAATCAAAGTGGAGCTGTTGCCACATCAGAGGAGAGCTTTGGCTTGGCTGCTGtggagagaaacacagaaaccGTGTGGGGGAATTTTggCTGATGACATGGGCCTGGGAAAGACTCTCACAATGATCTCCCTCATTCTGTCTCAGAAAAAGAAGGATGAAAAACTGGAGGAATGGATCTCTAAAAATGATTCAACCATAGTGCCTTCCCAGGGGACGTTGATCATCTGTCCTGCTTCTCTGGTACATCACTGGAAGAAAGAAATTGACAAGCGTGTGAAGAGTAGCCGCCTCAGTGTGTATTTGTACCATGGCCCCAACCGACAGAGGAGTTTGAGCATCCTTGCTGAGCATGATGTTGTGATCACCACGTACAGTCTGGTGTCTAAAGAGATCCCAGTGCAGAAGGAGGATGCAGAGAAACCCTCTAAGGACTCTGATCATGTGGCCACAGACATGCCTCTGTTACGTGTTGCCTGGGCACGTGTGATTCTCGATGAAGCTCACAACATTAAGAACccaaaagtccagacatccatggCGGTGTGTAAGCTGCGGGCCCGATCCCGCTGGGCTGTCACTGGAACCCCAATTCAGAACAACCTGCTGGATATGTATTCACTGCTCAAGTTTCTGAGATGCTCCCCATTTGACGAGTATAAGCTGTGGAAGACTCAGGTGGATAATGGCtcaaagagaggaggagagagattGAACATCCTCACCAGAACTCTGCTGCTTCGCAGGACCAAAGATCAGCTGGACTCTTCTGGAAAACCACTGGTGTCTCTGCCTGATCGGACGTGTGAGGTTCACAGGTTGAAGCTGTCTGAAGATGAACAGGCTGTATATGATGTTGTGTTTGCACAATCCAGgTCCACACTGCAGAACTATCTTAAGAGACATGAGGAAGGAAACACTAAAAAGGGGGATAGTAGTAATCCTTTTGAAAAAGTTGCCCGAGAGTTTGGGATGTCTCAGCAGGAACCGCTGTCTTCCTCTCAGCAGCCTCAGGCCTCCAGCACCATCCACATCCTGTCACTGCTGCTGCGTCTCAGGCAGTGCTGCTGCCATCTGTCTCTGCTCAAGAAGACTCTGGATCAATCGGAGCTGCAGGGGGATGGTGTAGCTCTGTCTCTAGAAGAGCAACTGTgtgctctgtctctgtctgagCCCTCAGACTCTGACCCTAAAGACACTGTGTCCCTCAACGGCAGCCGCTTCTCCTCTAAGCTGTTCAAGGACACTCGTGAAAGCACTAAGatttcagCCATTCTGACAGAGTTGAGAGAAATTAGGAAGAAAGACCAAAAAAGTGTGATTGTGTCTCAGTGGACCAGCATGCTGAATATTGTTGCTGTTCACTTGGAGAAAATGGGTCTGAAGTTTGCAGTAGTCGATGGCACTGTCAACCCTAAACGCAGAATGGACCTAGTGGAGGAGTTCAACACTAACCCTAAAGGACCACAGGTGATGCTGGTGTCTCTGTGTGCTGGAGGTGTGGGAATCAATCTGATTGGAGGGAATCATCTGTTTCTCATTGACATGCACTGGAATCCAGCACTAGAGGACCAGGCCTGTGATCGTATCTATAGGGTGGGACAATCACGGGATGTTACAATTCACAGGTTTGTGTGTGATGGGACAGTGGAGGACAAGATCTCTTCACtacaggagaagaagaaggaaCTGGCTCAGAAAGTCTTGTCTGGAACTGGATCCTCATTCACTAAACTGTCTCTGGCAGATCTCAGGGTCATCTTCGGTGTGTGATGTGCTTTTTGTGCcataaaactaatattaatatacaaaaccATCATTTTATCTACTTTTGTTGCTGTTATGTATGCTGTATTGTATTACTAGGAAGATCAATGATTGTATTTCATGAAATCAAAGACTTTTTGGGTAATGTTTATATTGAATAAATTTAAAGTTTGTCACCATA

Function

GO: NA

KEGG:

id description
K15173 TTF2; transcription termination factor 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU102028 lncRNA downstream 3836 9654116 ~ 9654567 (-) True G68988
TU102006 lncRNA downstream 5801 9633863 ~ 9652602 (-) True G68987
TU102014 lncRNA downstream 5801 9637967 ~ 9652602 (-) False G68987
TU102008 lncRNA downstream 15791 9632033 ~ 9642612 (-) False G68987
TU101996 lncRNA downstream 47664 9607304 ~ 9610739 (-) True G68981
TU102035 lncRNA upstream 3050 9672572 ~ 9672901 (-) True G68994
TU102048 lncRNA upstream 221129 9890651 ~ 9891596 (-) True G69004
TU102062 lncRNA upstream 243564 9913086 ~ 9945802 (-) True G69018
TU102268 lncRNA upstream 415911 10085433 ~ 10087022 (-) True G69147
TU102250 lncRNA upstream 439453 10108975 ~ 10110243 (-) True G69136
XM_043248972.1 mRNA downstream 32236 9611019 ~ 9626167 (-) False nxph2a
XM_043248973.1 mRNA downstream 32237 9611849 ~ 9626166 (-) True nxph2a
XM_043249599.1 mRNA downstream 469929 9186577 ~ 9188474 (-) True cxcr4b
XM_043249167.1 mRNA downstream 473850 9160309 ~ 9184553 (-) False dars1
XM_043249536.1 mRNA upstream 7732 9677254 ~ 9803592 (-) True igsf3
XM_043248562.1 mRNA upstream 238669 9908191 ~ 9910108 (-) False LOC122351483
XM_043248247.1 mRNA upstream 320668 9990190 ~ 9993472 (-) True LOC122351281
XM_043248468.1 mRNA upstream 382103 10051625 ~ 10057760 (-) True acp6
XM_043248260.1 mRNA upstream 390796 10060318 ~ 10070885 (-) True gja5a
unassigned_transcript_1465 other downstream 1317388 8340943 ~ 8341015 (-) True trnak-uuu_106
XR_006251804.1 other downstream 1563556 8079136 ~ 8094847 (-) False als2a
TU101496 other downstream 1640298 8014449 ~ 8018105 (-) False LOC122351623
TU101110 other downstream 2509783 7070985 ~ 7148620 (-) False LOC122351350
TU100887 other downstream 3397334 6246900 ~ 6261069 (-) True G68188
TU102057 other upstream 238666 9908188 ~ 9910178 (-) True LOC122351483
XR_006251819.1 other upstream 763985 10433507 ~ 10441872 (-) False trim13
XR_006251818.1 other upstream 763985 10433507 ~ 10441872 (-) False trim13
XR_006251820.1 other upstream 763985 10433507 ~ 10441872 (-) True trim13
XR_006251803.1 other upstream 845750 10515272 ~ 10519457 (-) False fdx1

Expression Profile