RNA id: XM_043249520.1


Basic Information

Item Value
RNA id XM_043249520.1
length 2503
RNA type mRNA
GC content 0.52
exon number 17
gene id LOC122352034
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 22341408 ~ 22398653 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gtgtgtgtgtgtgtgacagcgtTCCCTCAGTGCGTAGCGGAGAGACAGGTCTGCGCGCTGACACTCACTCCAGCGGGCTGATGCGCTCTGGAGCTGCGAGCAGGACCCTCTGGGAGACGTTTGTCGCTCAAACTGCCGGAGATGCTTTGAAGACCCGGATCTCTGTGCTACACGTGTTGAATCGCATACCTGCGTATCCCTCTGCATCTTAGATCACTCCAAACACTCGCGCGTTCGTGCACACCATGGATGCTCTGGCCAACGACACGGACGGGCTGGAGAACTCCTTGAAGTACTCCAAGTGCGACCAGACGGAGAAGATGTGGATTAGGCTGAAAGGAATGCAGAAGTACAAAAGCACATCTCAAAGATTGAGATGTCTGGTGAAGCAGCTGGATAAGGGGGAGGTGAACGTCGTAGATCTGAGGAAAAACATCGAATATGCCGCGTCGGTTCTGGAAGCAGTGTACATTGACGAAACTAGGCGGCTTCTGGACACAGAGGATGAGCTCAGTGATATCCAGGCAGACTCTGTGCCCATGGAGGTGCGAGATTGGCTGGCCTCCACCTTCACCAGGAAGATGGGAGTGGTGCGCAGACGGCCGGAAGAAAAGCCCCGGTTCCGCAGCATCGTTCACGCCGTTCAGGCTGGGATCTTTGTTGAACGaatGTACAGAAGAACATCCAACATGGCAGGGTTGACCTATCCACCATCTGTGATTACTGCTCTAAAGGATGTTGATAAATGGTCATTTGACGTCTTCACGCTTCAAGAGGCGAGTAGTGAACACGCTCTGAAGTTCCTGGTGTATGAACTTCTCACCAGATATGACCTGATCAGCCGCTTCAGAATACCAGTGTCCTCCTTGGTGTCATTTGTGGAAGCTCTGGAAATCGGCTACAGCAAGCACAGAAACCCTTATCACAATCTGATCCACGCTGCCGATGTCACGCAGACAGCACACTATCTGATGCTACACACTGGCATTATGCACTGGCTCACTGAACTGGAAATATTGGCCATGGTGTTTGCCGCTGCTATCCACGACTTTGAACACACTGGAACCACCAATAACTTCCACATCCAGACCAGATCGGAAGTAGCCATCCTCTACAACGATCGCTCGGTTCTGGAAAACCACCACGTGAGCGCAGCCTACAGACTCATGCAGGAAGATGAGATGAACATCCTGGTCAACCTCTCCAAGGATGACTGGAGAGAGCTGCGTACGCTGGTGATCGAGATGGTCATGAGCACAGATATGTCCTGCCATTTCCAGCAGATCAAGACGATGAGGAACACTCTGCAGCAGCCCGAGGGAATAGACAAGGCTAAAGCGCTGTCCCTGATGCCTGCGGCTGATATCAGCCATCCCGCTAAGGGCTGGAAACTGCACTACCGCTGGACACAAGCGCTCATGGAGGAGTTCTTCAGACAGGGTGACAAGGAGGCAGAACTAGGGCTGCCATTCTCTCCACTGTGTGACCGGAAAGCTACCATGATTGCCCAGTCTCAGATAGGGTTCATCGATTTCATCGTGGAGCCTACGTTCTCTGTTCTGGTCGACACGACAGAGAAGATCATTAGTCCTCTCATAGAGGAAGCTGTCAAATCTGGGGGTGTGCGCAGGTCAAGTTTGACAGGTCGGGGCTCGGCTGCGGTGGTGGAGTCAGTGCAGAGACACAGCGGTCGGGGTTCGAATGACGAGCAGGGGGGCACTACAGATTACTCACTGTGCGGCATCGACCTAAAACGAGTCCGACACCTGCTCTCTGAGATCATCCAGAACAACAAGGAGCGCTGGAAAGAGCTGTCTGTGCAAGAGTTGGCCAACAAACAACACGAGAGAATGTCAGACCTGGAAGAGGAGCCCATGAGGAACACACAAGTCACACTGTCCCGCAGCAGTCCAGCCAGAGGGAGTCACGACTCAGAGTCCAAGTCCCTGAACGAACTCAACAATACGGACTCCACTCACTCTTCCCAGGACTCTCTGGACCAGAGCTCCCAGTCCCCGACGGAGGGGCCCGGCGAAGGCTCCCCAGAGGAGCACAGCTCAGAAACTCTGCCTTGGAATGGCAAAAGCGCCTAACGTCACACAGACGCAGCCAAGcctgaatgtttttaatcacaaaCAGGACGATGTACATAGCATTGTCCTCATTGTATTGTAATGCTATTATACTCTCGGGCTCGGAGGGCTAATTGTGCGGACGGATGCGCCGAACGTCCACGCAGCGCGTCGTAGAGACGGTAGTGTGCGGTGTTGTCATTGCGACTGTGTTATTGCCGGAGATAGACCTCTATCGTCCCCTTGAGGAGGATTTAGCGAGCCCCTGAAACGCAACGCTACCTATTCGCTTCCCGGGCTTTATTCATGTTGGTTCTATTACGATTtacgtttttcttttctctctcttttttggttttgtttgtagactgtcattatttattaaagattaaagaaacgtgacacttttttaaaaaaaataggctcatttt

Function

GO: NA

KEGG:

id description
K13755 PDE1; calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107340 lncRNA downstream 30930 22307182 ~ 22310478 (-) True G72537
TU107272 lncRNA downstream 46340 22286774 ~ 22295068 (-) True G72502
TU107268 lncRNA downstream 218000 22123190 ~ 22123408 (-) True G72500
TU107261 lncRNA downstream 241170 22100026 ~ 22100238 (-) True G72493
TU107239 lncRNA downstream 284573 22054014 ~ 22056835 (-) True G72472
TU107400 lncRNA upstream 181150 22579803 ~ 22580772 (-) True G72583
XR_006251847.1 lncRNA upstream 187091 22585744 ~ 22588251 (-) True LOC122352087
TU107436 lncRNA upstream 253849 22652502 ~ 22653575 (-) True G72605
TU107432 lncRNA upstream 259664 22658317 ~ 22658828 (-) True G72603
TU107440 lncRNA upstream 268244 22666897 ~ 22667111 (-) True G72608
XM_043248644.1 mRNA downstream 112909 22225558 ~ 22228499 (-) True neurod1
XM_043248643.1 mRNA downstream 117742 22171463 ~ 22223666 (-) True cerkl
XM_043249016.1 mRNA downstream 433695 21897185 ~ 21907713 (-) True LOC122351744
XM_043248710.1 mRNA downstream 445361 21744043 ~ 21896047 (-) True LOC122351560
XM_043249014.1 mRNA downstream 1170633 21168939 ~ 21170775 (-) True LOC122351741
XM_043249018.1 mRNA upstream 47740 22446393 ~ 22510524 (-) True LOC122351746
XM_043249180.1 mRNA upstream 83573 22482226 ~ 22484709 (-) True LOC122351832
XM_043249423.1 mRNA upstream 139322 22537975 ~ 22541710 (-) True dusp19a
XM_043249029.1 mRNA upstream 199175 22597828 ~ 22610069 (-) True dnajc10
XM_043249030.1 mRNA upstream 212705 22611358 ~ 22615781 (-) True LOC122351760
TU107316 other downstream 34395 22299172 ~ 22307013 (-) False LOC122351746
XR_006251764.1 other downstream 117741 22171463 ~ 22223667 (-) False cerkl
TU107092 other downstream 614588 21709288 ~ 21726820 (-) True G72363
TU106614 other downstream 1837518 20489164 ~ 20503890 (-) False G71938
TU106615 other downstream 1837518 20489164 ~ 20503890 (-) True G71938
TU107329 other upstream 60743 22459396 ~ 22511307 (-) False LOC122351746
TU107929 other upstream 1531554 23930207 ~ 23931329 (-) True G72930
TU107931 other upstream 1557566 23956219 ~ 23960325 (-) False grb14
TU108001 other upstream 1821869 24220522 ~ 24280708 (-) False G72978
TU108002 other upstream 1832582 24231235 ~ 24280708 (-) False G72978

Expression Profile