RNA id: XM_043249529.1


Basic Information

Item Value
RNA id XM_043249529.1
length 3451
RNA type mRNA
GC content 0.44
exon number 7
gene id ccdc80
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 16684746 ~ 16694462 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACTTTCTGACATGTCTGGGAAAGCTTCCAGTGATAAGGAGCCGCACAGAGAGTTTACCAAACTTTTGGAAGTATTACTGACTTTTTCTAATTTTTCGCGACGTGCGGTGCGTTGAAGTGGTGCGTGTCAAACTTCTGAGGAGCAGAGCTTTACTTCTTGGCATCTATTTTCAGATGATTAAGggattatatgcattttaatacagcAATGAGGAGATGAGAAAATCTGGCGCTGGGTAGCAGTAAATGCCCATTGCATTGATTCAGCCAGATCGCGCGCTGTTTGTTCAAGAAATGTTTCCTAAACACACTTACAGGTAAAACCAAGGTCGATCTAACTTGACcgattttgtcttttttttaattattaatttttttttaagaaaattattttctttgtttgttaaGTACCCAAAGactttgtcttgttttgcactgagcatttgaaacatttgatCTTATGACGCTTTACCGGATTGTATCTCTCTACTGACTCAAGTGTTGCTAAAGTTTTCAAACATGAGGGGAAGGTACATGCTTGGCTTCGGTGTTTTGTGTCTGTTGACATGGGCTGTTTACGTGTCCGAGAGCAGTCCGACCGATAAACAAGCCAAACTCAGACTGATGACCATAAGACGAgcaagacaaaacaaatcacGACAGGATCAGATCATCAAAACACGTTATCTTTCACGGCTCAGTAACAGAGGAATAGATGAAGGTATAAACGTTACCAGGAGCGTCCAATCCAGAAAGGACTTGCCACAAATGAGACCAGCACAGGGTGAGTATATAAACCCAATCCAGCAAGATGATGGAGCACCTGGAGCCAGGGCCAGAGTATCTCGCATGCCAAGCAGCGCGGGCTCTCCAAACTTACTGGCGTCATTTGCAGGGAAAAATCGCCTGCTGGTTATTTCCGCTCCTCACGACTCTGATGGTTACTACAGACTGATGATGAGTCTTCTCAAACCTGATGTTTACTGCGAATTGGCAGAGCGACACGTGCAtcaaattgtaatgtttcaccAGGAAGGGGAATTAGGTGGGAAAATCAGACGCATTACTAATGAGGGCAAGGTGATGGAAGAGCCGTTAGATACAACTATTATTCCCAGACTCATTAACTTTCTGAAATTAGAGAAAGGAAAGTTTGGGATGGTCCTTCTTAAGAAGACTCTTCAGGTAGAAGAGCGCTACCCGTACCCTGTCAGATTGGAAGCGATGTATGAAGTTATTGACCAGTCGCCCATTCGCAAAATGGAAAAAGTCAGGCAGAAAGGCTTTGTGCAGAAGTGTAAAGGGGCTGGGGTGGAGGGGCAGGTGGTGGAGGGTGTCCCCAGCACTGACCCCCCAGTTGACCCATCAATGGAGAGGAGAAAAGAGGTGCGGAAACCAATTCGAAGACCAGCTACAACTACTACTTCAGCACCAATAAGACCGACGACCACTACCAAAGCAactaccaccaccaccacaacaCGTCCCCCAACTACAACCCGATCCACCACTACAACGACGACAACAACGCGGCCAACCACAACACGGACGACCACCACTCTAAGAACGACCAGAGCTCCTACTACCCCACAATGGATCCCGGCCCACAAGACCACCACTGAGCCATACCATTACAACCGTAGAGACAGACACCAGACAACCTCACCCACAACACTTCCCATCTACACCAAATCTGATACAACAAAATACAAGGACAACCACACAGATAAAAAAGAATACAACCACAAACATACCAGCATACCTACACAACAGAAACCACCTAAAGTTAAgcctacaaagaaaaaaaatggtgataAGGAAATTAGCAATGTTTATGAAGAGAAATATGATGTAGGTGAGCCCACCGATGTCTATCCTGAAGAGAAGGAGGAAGAAATTGTGCGTGGCAAGAAAGTCAAGGGCAGGGCggataaaaagaagaaaaaggacaaGAAGGACAAGACGGAAAGGAAGGGAAAGGATGGAAAGGGTGGCaagaaaaatggaaagaaagtATTAAAGAAAACTGAGAAAGAAGAGTATCAGAAACCAACAAAAAGACCACCACCCCCTCCGCCACCTAAAGGAACTCTGGCAACCTTTTTGGActattttgaaagcaaaaggaGACTAATTTTGATCACTTCTCCAACAGAGGAGAACACCATGTATGTTCAGCAAAGGGATGAATACTTGGAACATGTGTGTGAGATGGCCATCAGGAAGGTCTCCATCATCACCATCTTTGGCACGCTTACAAACAGCACCATGAAAATAGATCATTACCAACTTGAGAATGACAAGCCCATGAAAGGTCTGAAACAGGAGGATTTGGAGAACCAGGATCTTATCACAGAGCTGAGGAAAGAGTACAGAATGACGTACAGTGATTTCTACATGGTCCTCACAGATCTGGACATGAAAGCCAAGCAATATTATGAGGTGCCAATTGCGATGAAGGCTGTGTTTGATTACGTCGACACGTTTTCATCACGCATCAGAGAGATGGAACAACAAAAGCGTGATGGGGTGACGTGTAAAAAAGAAGACAAGCCAAGATCGTTGGAGAACTTCCTTTCCAGGTTCCGCTGGAGACGCAGGTTGTTTGTCATATCTGCACCAAATGATGAGGAATGGGCCTATCAGCAACAGCTCTATGCACTAAACAGTCAGGCATGCAACCTGGGTCTTCGCCATGTATCGGTTCTGAAGCTGGTGGGGACAGATCTCATAGACATGGGAGGAGTGCTGGAGCTTTACCCCATCAATGGAAGTGCAACGGTGGAGCGTGAGGGCATCTCTGCCACTCTAGTGAGGGACATCAGAAACTATTTCCAGATCAGCCCAGAGTACTTCTCCATGCTGCTGGTAGGAAAAGACGGAAATGTCAAGTCCTGGTACCCGTCACCTATGTGGTCCATGGCCATCATCTATGACTTGATCGACTCCATGCAGCTTCGCAGACAGGAAATGGCTATCCAGCAGTCTCTAGGCATGCGCTGTCCGGAGGATGAGTACGGTGGCTATGGCTACCACCATGAGGGGTACCAGGATGGTTATCATCAGGGTTATGGCTATTAGGGTTTACACTTTCATAAATCAGTGTCAGGGTAAGAGTAATAACTAAAAAACTTCCTTTTTAACTGGTTTTACATTTATCATATAGAGCTGTTCATGTCTGAATATGCATCTCCTCTGCTATACATCTGTCTCTTCATGTTGGTCATTTATGGACATAATCTTTTGTAGATAAAGACgttaacaaaacatttgtatttattggaTGTCTTCTCTATAAGAAGTGATCGTTTTTAAAGGTCACAACCTGCTTTTTCTCGTTAAACTATGTTTTGATATTGTTACTCTATTTTTAAAGAGCACTGTCGCTGTATGTCTTATTTATAAACTTATAAATTGTactttaatttcaataaaaatacattatattgctA

Function

GO:      GO:0005578

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104730 lncRNA upstream 68682 16615538 ~ 16616064 (+) True G70804
TU104729 lncRNA upstream 69829 16614685 ~ 16614917 (+) True G70803
TU104728 lncRNA upstream 74626 16609868 ~ 16610120 (+) True G70802
TU104726 lncRNA upstream 78403 16605396 ~ 16606343 (+) True G70800
XR_006251711.1 lncRNA upstream 84874 16586641 ~ 16599872 (+) True LOC122351189
TU104742 lncRNA downstream 35193 16729655 ~ 16731361 (+) False G70814
TU104773 lncRNA downstream 120368 16814830 ~ 16815402 (+) True G70837
TU104792 lncRNA downstream 172028 16866490 ~ 16867502 (+) True G70841
TU104795 lncRNA downstream 185611 16880073 ~ 16880511 (+) True G70844
TU105030 lncRNA downstream 189180 16883642 ~ 16883901 (+) True G71008
XM_043248770.1 mRNA upstream 104433 16541232 ~ 16580313 (+) False kdm6a
XM_043248772.1 mRNA upstream 104433 16541232 ~ 16580313 (+) False kdm6a
XM_043248769.1 mRNA upstream 104433 16541233 ~ 16580313 (+) True kdm6a
XM_043248771.1 mRNA upstream 104433 16541233 ~ 16580313 (+) False kdm6a
XM_043248773.1 mRNA upstream 104433 16541234 ~ 16580313 (+) False kdm6a
XM_043249381.1 mRNA downstream 5303 16699765 ~ 16713826 (+) True f5
XM_043249389.1 mRNA downstream 19512 16713974 ~ 16720587 (+) True gpr161a
XM_043249499.1 mRNA downstream 51431 16745893 ~ 16749701 (+) True mpc2b
XM_043249672.1 mRNA downstream 130372 16824834 ~ 16829252 (+) True gpa33b
XM_043248620.1 mRNA downstream 135971 16830433 ~ 16845202 (+) True ildr2
TU104501 other upstream 938640 15734592 ~ 15746106 (+) False plcl1
TU104429 other upstream 973569 15708236 ~ 15711177 (+) False LOC122351678
XR_006251807.1 other upstream 1259707 15401128 ~ 15425039 (+) False si:ch211-168k14.2
XR_006251758.1 other upstream 3002755 13676163 ~ 13681991 (+) False ccnt2a
unassigned_transcript_1467 other upstream 3260920 13423714 ~ 13423826 (+) True trnal-caa
TU104743 other downstream 34045 16728507 ~ 16731361 (+) True G70814
TU104753 other downstream 51437 16745899 ~ 16749695 (+) False mpc2b
TU105078 other downstream 222299 16916761 ~ 16919290 (+) True si:ch211-218d20.15
TU105185 other downstream 509335 17203797 ~ 17206505 (+) False jam2b
TU105274 other downstream 644665 17339127 ~ 17339622 (+) True G71130

Expression Profile