RNA id: XM_043249532.1


Basic Information

Item Value
RNA id XM_043249532.1
length 5941
RNA type mRNA
GC content 0.43
exon number 23
gene id LOC122352042
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 23281514 ~ 23290139 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGAACGCTTTGTAGAACAGTCATGATGAAGGTCCTAGAAGGATTTCTTTCTCTAGGTTTGTTGGCTGTTTTTTGGAGCTCCACTAATGCAGAGCAACAGGACTTCATGTTACTAGCTGGCCCTCTGAAAACCAGCCAGACTTCACCACCACATGAAGACAATGCATTTAACTGTGGAGGTCCACTGCCTCAACAATCCAGATCCTACTTTCAGTTCCTTCAGAGCAAAGGGGTGACCCACTTTAAAGTCCCCCTCTCCTGTCACGATCCTTCCTCAGGTGATCCCAACCAGCCACATGAAGACACTGTGAAGTGCTACAAGATACTTCAGCAGCAGCTGACTGAATCAGGCATCAAACCTCTGCTGGTTCTCCATCGTTCTGCTGTACCAGAAGACTTCAGAGCCAGATTTGGAGGTTGGGAAAATCCATTACTGGTGCAGATGTTTGAGCAGTATGCAGGATTTGTCTTCACTACATTTAGGGACCTTGTGGACACGTTCATTACCTTCAGTCACCTGCACGAGCTACATGAAGTGCAACTTCAAAATGCTCTTCAGTGCCATGCAAATGTTTATCGTCAAATGTTCATGGcactTCATTTGTCTGTTGGGATCAGAGCCAGTGATATTAACTCCATTTATCAAATAGGTACTAAAATCATGGCATATGTGGATTTCATCTCTCTGCACATGCAGTACAATTGCAAATTGAAGACACCTCTTACAGAGGAATTGAGGAAGTTACAGGTTGGCAGTGGCCAAAAGCCCATCCTTATGTATCAGCTGACAGTCGAAGACTGTGATGGAAATGAAGATCATTTTCAACCACTTCATGCAGTTTTTGAAGTTTTACAGAACAAAGATCTTCACATCATGGGCTGTGACATCACACATCTATTTGAGAAGCTAAATCAGGAAGAAACCGAAAAGAAAAGTTTGCAGATGCAAAATACTAAGGAAGTCTCACATCAGAAATCAGCTTCTGCATTCTCATACCAAAAGGTCTGGGAGAAATTTAGAAGTCAAACTGAAGCCGAGCGTGATCAGTTTTTAAGTGGCTCCTTCCCAGTTAATTTTGACTGGTCTGTCTCCAGTGAGAGTTTCAAAGTGGAGGGTGGATGGGCTGAACATGGGAAGGGTGAGACCATTTGGGACCGATTTAGCCATGAAGGCCATGTCTTTGAAAACCAGACCACTGATTTGGCCTGTGATAGTTATCACAAGGTGGACTATGATGTGTATCTGCAGGGCATGAAGGCACCTAATTATCAGTTCTCAATTTCATGGGCTCGTATTTTCTCCACCGGACGCAAAGAAAGTTTGCTTGAAAAAGGTGTTGCCTATTATGACAAGATGATTGATACACTGCTACAATCCGGCATTGAGCCCACTGTTACCCTGCATCACTGGGACCTTCCTCAAGCTCTGCAGGACTTAGGCGGCTGGGAAAATGACTCTGTTGTGGACGCTTTCAAAGAATTTTCTGACTTCTGCTTCTCTCATTATGGAGACAGAGTCAAAACATGGATCACCTTCGGCAGCCCGTGGGTAGTGAGCAACTTGGGGTATGGAACAGGGGAACATCCCCCGAGAGTGAAAGACCCAATAATCGCATCTTACAAGgtGACACACAATATTCTAAAATCACATGCTGAAGCCTGgcatatttataatgataattacAGAAAACTGCAGGGTGGAAAAGTGGGCATTGCTCTTAATTCCGATTGGGCAGAGCCAAGTAATCCCTCAAGTGATCAAGATGTAGCAGCAGCTGAGCGTTATCTAAACTTCATGCTAGGCTGGTTTGCTCATCCCATATTTGTAGATGGAGACTATTCAACCGTGTTAAAGGAACAAATTGAGGAAAAGAAAGCTTCATGTGGTAAAGAGCTAGCCAGACTGCCTGTTTTCACTGAGGCTGAGAAACAAAGAATTCGAGGCACAGCTGATTTCTTTGGACTAAACCACTATACTTCCCGAATGATTAGTGAGAGCTTGAATAGTTGTGATGCTGGACAGAATAATGTCGGGGACTTCCAGACTCATATTGATCCTACATGGCCCCCTACAGTGTCTGATCAGATCCAGTCTGTTCCGTGGGGTCTTCGGAGAttattgaactacatctctTTAGAGTACACATCCATCACAAAGGTGCCCATCTACATCACAGGAAATGGAATGCCAACTGAATACAATGGTGATGTGTTCAATGACAATAATCGTGTTGACTATCTCAAAACCTACATTAATGAGGCAATGAAAGCTGTACTTTTGGATGGAATTGATGTTCAGAGGTTTACAGTCCAGGCTCTAATGGATGGATTTGAGGGTCCTCAAGGCTACAGTCAACGATTTGGGTTGCACCATGTGGACTTTGAAGATCCTGACAGACCAAGAACCCCCAAAGCATCAGCATATTACTACTCAGAAGTGATTGAGAGAAATGGATTTGCAGAGACTACGACAAAGGCTAAGATGCAGATGTATGGAAATGAAATTGGAATCACAAGACTTCCTAGACTGCTGCCATCTGAAGTTCCTTCAAAATCCAAGGTTGTTTGGGAAAAGTTCTCCCCTCAGACCAAGTTTGAGAGACAGCTTTATCACTACGGAACATTTCCAGAAGGATTCCTTTGGGGTGTCTCGTCTTCAGCATATCAGGTAGAAGGTGGCTGGAATGCAGATGGAAAAGGGCCAAGTGTTTGGGATACTTTCGCTCAAAAACCTGGTAGTATCCCAAACAATGACAATGGTGATGTTGCATGTGACagttacaacaaaataaatgaggatCTACACATGCTGAGGGCCCTAAAAGTGAAAACTTACCGATTCTCCATGTCATGGTCTCGAATTTTTCCCAGCGGCTATAAATCTTCTCTTAACCAGAGGGGGGTGGACTATTACAACAGGCTCATAAATGGTCTCATAGCAAACAATATCACACCAATGGTGACGCTCTACCACTGGGACCTGCCACAGGCTTTGCAGGACATCAATGGTTGGGACAACCCTGAAATGATTAATATATTCAATGAGTATTGTGACTTCTGCTATGCAACATTTGGAGACAGGGTGAAGTTTTGGATCACATTTAATGAACCCCAGACAATTGCATGGTCAGGATATGGACTGGGGCAGATTCCGCCTAACATGAAGCAACCTGGAGATGCTCCATACAGGGTTGCACACAACCTCCTGAAAGCTCATGCACAAGCATATCACACTTATGATGAGAAGTACAGGGCATCTCAAGGAGGTCTGGTATCCATTAGTCTGAATGCCGAATGGGCAGAACCCCAAGACATCAATGTTCCTCGAGAGGTGGTGGCTGCTGATCGAGCTCTTCAGTTCCAGCTTGGCTGGTTTGCACACCCCATCTTTAAAAATGGTGATTATCCTGATGCTATGAAGTGGCAGGTTGGGAACAAGAGTGAACTTCAAGGCTTAACCGAATCCAGGTTACCTTCTTTTACTGATGAAGACAAAGCCTTTATCCAAGGAACAGCTGATGTATTCTGCATTAATACATACACTACCAAAGTTGTGCGTCATGTGACCAGCAGACTCAATATAGAGTCTTATGAAACTGATCAGGATGGAAAAGACAATGCAGATGGCtctgaaaatacagctgttaATGAGCAAAAGGCTGTAGCCTGGGGTATCAGGAGACTTCTTAACTGGTTAAAGGAAGAGTATGGAGACCCTGAGATTTATATCACAGAAAATGGTGTGGCTACAGGCACTGCTATAACAGTTGATGACACTGATCGAATATTCTTCCTGAAGACCTATGTTGATGAAGCTCTTAAAGCGCACAATCTGGATGGAGTACGTGTCAAAGGTTACATTGCTTCCTCTCTAATGGACTCCTTTGAGTGGCTGAAAGGCTACACTGTTGGCTATGGGCTTCACTACGTGAACTTTAAACATTCAAGTCGTCCAAGAACTCCAAAGCGCTCTGCTCACCTCTACTTTGACATAATGAGAAATAATGGCTTTCCACTGCCAACCGAAGAAGAAATGTTATATGGACATTTCCCAGAGGGATTTATATGGAGCACAGCAACTGCTGCCTATCAGATAGAGGGCGCCTGGAGAGCCGATGGAAAAGGTCTCAGCATTTGGGACAAATTTGCTCATACTGCTTTAAAGATATCGCTGGATGAAAATGGTGATATCGCCTGTGACAGCTACAACAAGATCGCTGAGGATATCAATAGTCTCAAAACACTCAGGGTCAACCACTATCGATTTTCTATTTCATGGCCAAGAATTATGCCAGATGGaacaaacagtaaaattaaTGAAGCTGGACTCAACTACTATCATAGGCTAGTAGATGCTCTTTTGGCAGCCAATATCAAACCACagGCGACTTTGTATCACTGGGATCTTCCACAAGCACTCCAGGATGTTGGTGGTTGGGAGAATGACACCATTGttgagagattcagagactATGCTGATGTTGTATTCAACAGTCTGGGAGACAAAGTAAAGTTCTGGATCACTATAAATGAACCCTACAATGTTGCAATGGTGGGACATGGCTATGGAAGTGCAGCACCAGGTATAAGTTTCAGACCAGGCACTGCACCATATATTGTGGCACACAATCTAATCAAGGCTCATGCTGAGGCCTGGCATGTATATAATGACAAGTATCGTGCAAAACACGGTGGCATAGTTGGCATCACTATAAACTCTGACTGGGCTGAACCAAGAAATCCATACAAACAAGAAGACGTGGATGCTGCCATTCGTGTAGTCCAGTTCCAGATTGGTTGGTTTGCTCATCCCGTGTTCAATGGAGATTACAGTGATTTAATGAAGGACATTATTCGAGATAGAAGTTTAGCAGCTGGCCGACCAAAATCAAgGCTTCCAGAATACCCTGCAGAAGTAGCGAGGATAAAGGGAACACATGATTATTTTGGATTCAACCACTACACCACTGTCTTAGCCTATAACCACTACAAGAACCTTGAGCATTATGATGCAGACAGGGGGGCAGGAACAGTTACGGATCGTACATGGCTGGATTCTGGCTCCTTCTGGTTGAAAGTAACTCCTGTGGGATTCAGAAAAATTCTAAATTTCATCAAGGAGGAATATGGACCCCCTATTTACATTACAGAGAACGGAGTATCAGAACGAGGGTCAATGAATCTGAATGATGTTCACCGAAGCCACTACTATGATAACTATATCAATCAGGCCCTGAAAGCGTATTTGCTGGATGGAGTAGACATCCGTGGCTACGCTGCCTGGACACTAATGGACAATCTGGAATGGGCGACGGGTTTTGATGAAAAATTCGGCTTTTTCTATGTAAATCGATCAGATGCTTCATTACCACGTATTCCCAAGAAATCTGTCTGGCACTACGCTACGATAATCAACTGCAATGGCTTCATAAGTCCAGGAGAAAGTCCACATGACTGTCAGATCCATGAACCTGATGTTGACATCCCAGGTACTACTCCTCCATCTCCTCCTGGTGAGGAACCTTTGGTTAGTTTCTTAGGTTTGGAAGTGTCAGGTCCTGATGCTACACTGGCTCTAAATGTCCTCTTCAGTCTCACCGTTATTGCAGCAGTTGCTGTTGCCCTCTTGGTGTATGGACTTGTCAAGacatctaagaaaaaaaaacgtcctGTAGAGGAGTACATTGACCTTGAGAAGAAGGATAAGTTCTGAACATAACACCTGCTTTTCCAATACATTATATATCTGTCACATGTATATGAATTCACTGACAGtctatttaaatgcatacagtAGATTGTTCagttatgtgttttttaatgctttgcaTCTATTTATGTagatgctgatttaaaaaaaaagtcaagagaATAAAGTAATTCAATTGTTCAATTGTCTCTTTTTTACCTCATTATAACCAGTATAAACAACATTGAACCAA

Function

GO: NA

KEGG:

id description
K01229 LCT; lactase-phlorizin hydrolase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107687 lncRNA downstream 3728 23256078 ~ 23277786 (-) True G72803
TU107694 lncRNA downstream 9995 23271094 ~ 23271519 (-) True G72809
TU107693 lncRNA downstream 12750 23268321 ~ 23268764 (-) True G72808
TU107677 lncRNA downstream 277774 23003397 ~ 23003740 (-) True G72795
TU107661 lncRNA downstream 339498 22941815 ~ 22942016 (-) True G72780
TU107712 lncRNA upstream 18348 23308487 ~ 23350822 (-) False LOC122352044
TU107711 lncRNA upstream 30347 23320486 ~ 23350822 (-) False LOC122352044
XR_006251832.1 lncRNA upstream 41142 23331281 ~ 23350941 (-) True LOC122352044
TU107710 lncRNA upstream 41150 23331289 ~ 23350822 (-) False LOC122352044
TU107714 lncRNA upstream 48555 23338694 ~ 23344034 (-) True G72816
XM_043249636.1 mRNA downstream 37267 23005838 ~ 23244247 (-) True hdac4
XM_043249637.1 mRNA downstream 169714 23005838 ~ 23111800 (-) False hdac4
XM_043249638.1 mRNA downstream 169915 23005838 ~ 23111599 (-) False hdac4
XM_043248246.1 mRNA downstream 375202 22902448 ~ 22906312 (-) True agr1
XM_043249090.1 mRNA downstream 635767 22636895 ~ 22645747 (-) True itgb2
XM_043249020.1 mRNA upstream 100553 23390692 ~ 23410990 (-) True LOC122351748
XM_043249534.1 mRNA upstream 129123 23419262 ~ 23426434 (-) True gjc4b
XM_043249535.1 mRNA upstream 129123 23419262 ~ 23426000 (-) False gjc4b
XM_043249556.1 mRNA upstream 274240 23564379 ~ 23649560 (-) True LOC122352061
XM_043249021.1 mRNA upstream 425970 23716109 ~ 23717055 (-) True LOC122351749
TU107329 other downstream 770207 22459396 ~ 22511307 (-) False LOC122351746
TU107316 other downstream 974501 22299172 ~ 22307013 (-) False LOC122351746
XR_006251764.1 other downstream 1057847 22171463 ~ 22223667 (-) False cerkl
TU107092 other downstream 1554694 21709288 ~ 21726820 (-) True G72363
TU106615 other downstream 2777624 20489164 ~ 20503890 (-) True G71938
TU107929 other upstream 640068 23930207 ~ 23931329 (-) True G72930
TU107931 other upstream 666080 23956219 ~ 23960325 (-) False grb14
TU108001 other upstream 930383 24220522 ~ 24280708 (-) False G72978
TU108002 other upstream 941096 24231235 ~ 24280708 (-) False G72978
TU108000 other upstream 981316 24271455 ~ 24280708 (-) True G72978

Expression Profile