RNA id: XM_043249535.1


Basic Information

Item Value
RNA id XM_043249535.1
length 2301
RNA type mRNA
GC content 0.46
exon number 3
gene id gjc4b
representative False

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 23419262 ~ 23426434 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AAACTTACGCACAGCTGGATGGGAATTGTGGGATAACGGACGGACCGTACGTAGCTTTCTGTGGTGGATATTAGAGTTACGTTCTTCTCAAAAGCGGCGTTGAAACGCAGACACGCTGCTGTTTGGGATGTTGGCTTTTTTCCTCTCTTACTTCTCGAGGAGCAAAAAAGATTCACCTCAGGACTGAGACGGCGGTTCTTCCTGAAGCACCATGAGCTGGAGTTTTCTTACTCGGCTGTTGGATGAAATCTCCAACCACTCCACCTTCGTGGGCAAGATCTGGCTCACGTTATTCATCATCTTTCGCATTGTGTTGACTGTTGTTGGGGGAGAATCGATATACTATGATGAACAGAGCAAATTTGTGTGCAACACCCAGCAACCTGGTTGCGAAAATGTCTGCTACGATGCGTTTGCACCACTCTCTCATGTAAGGTTTTGGGTTTTTCAGATCATTACGATCACGACTCCCACTATTATGTACCTGGGCTTTGCTATGCACAAGATCGCCCGCATGAATGACGACGAGTACAAGCCAAGTAACAGGAAACGCATGCCCATGATTAAACGTGGAGCCAACCGCGATTATGAGGAGGCTGAGGACAATGGCGAGGAAGATCCCATGATGATGGAGGAGATCCTgcctgagaaagagaaagctcCCGAGAAGCCCGCCCCTAAACACGACGGCCGCCGGAGGATAAAGCGTGACGGGCTCTTGAAGGTGTATATCCTGCAGCTTCTATCTCGGGTTGTTTTCGAGGTGGGCTTTCTCTTTGGCCAGTATATCCTGTATGGTTTCGAAGTCGCCCCCTCGTACGTGTGCACTCGCAGCCCCTGTCCACACACGGTGGACTGTTTTGTGTCGCGTCCCACGGAGAAAACCATCTTCCTGCTCATCATGTATTCCGTGAGTtgtctctgtttgtctctcactGTGTTAGAGATTCTTCATCTGGGCCTCAGCGGAATCCGCGATGCTTTTCGGCGGCGGTCACGTCATCATAGCGCCGCACGCCCCCGTGGCGCCATATGCAGACAGGTGCCCACAGCCCCGCCAGGGTACCATACTGCTCTGAAAAAAGACAAGCTGTCCATGGGATTGAAACCGGAGTATAACTTGGACTCGGGTCGGGAGTCTTTTGGTGATGAGTCGTCATCACGAGATATTGACCGTCTGCGCAGACACCTAAAACTGGCCCAGCAGCATCTAGATATGGTCTATCAGAATGGAGAGAGCAGTCCTTCACGCAGCAGCAGCCCAGAGTCCAACGGCACTGCTGTCGAGCAGAACAGACTGAACTTCGCTCAGGAGAAGCAGGGAAGCACATGTGAAAAAgGGATCCGTGCTTGATGGACTCATAGACTATCATCTGCTTTCCTGCACAACAAAGCGCCCCACCTGTGGTTGGCATTGTTCATCTTGAAAAGCGGAAAGTGTCTGTATGTGCGTGTTGTGTACTTTATGTTTGGCTGCTGAACATTGTGTGTACCGAGTGGAGCATGTGTGTCCTTGGGCGCACTGGTGAATCTGTGAGAATGTCCTGCAGTATTATGGCAAGGGAATGCTAAGTTAAAATCTCAGAAAGCAGCATCTCACCAACCAGTTATACTTGACATCAGCCAGTCTGCCTGATACTCCAAAGTGCCCGAATGCTATTTAGGAAGATGGTTGTTATACTCCTCAGTCACTAGGCGACTGTGCAATGTCCGTCATTTCTtgtcatctttttttgtttagtttttttttttcatagagaAAATAAATTGTGGTTCTTCCATTTGTTTACCACACTTCTTATGAAGTGCCAAGGGTTGCATCTCAAAAATGCCTTAAACTGGAGTTTACATATCTTTGCCATTCCAAAACGAGATGGACGAGCCAGTGCACAACCACATCAGAAATGTAGTTTAGTGTGTTTAGAACGGTTCTGTGTTTTGAGTAGCGGTCCACAATTAGTGTATGTTTGTAATGAACAAAATGGAAACCTGGAAAATGCTTGAATACTTGTGAATCAATTATTGATCTGCAAAGAAGCTTTTgatattatatttgcatattgcGTACTTTACCTGTATATGAGAAGTATTTTGGTAACTATCcctcttattttgaaaaagcttCTCTGTAGGCTACTATTTCAGtcttatttgtttgctttttgtttactTGTTATTTTCTGAGGCTTTAAACTAAAGTTTGGCTTTCGTTTCATTTGACCAACTGTTAAAAAGGCAAACTCAGCATTTTAGAGAACGTGTTCACACAATTGAAAGcactaataaagaaaaaaaaaatca

Function

GO:

id name namespace
GO:0007154 cell communication biological_process
GO:0005922 connexin complex cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251836.1 lncRNA downstream 32185 23380158 ~ 23387077 (-) True LOC122352046
XR_006251833.1 lncRNA downstream 39206 23361012 ~ 23380056 (-) False LOC122352045
XR_006251834.1 lncRNA downstream 41385 23361012 ~ 23377877 (-) False LOC122352045
XR_006251835.1 lncRNA downstream 54012 23361012 ~ 23365250 (-) True LOC122352045
TU107714 lncRNA downstream 75228 23338694 ~ 23344034 (-) True G72816
TU107858 lncRNA upstream 8176 23434176 ~ 23434476 (-) True G72881
TU107866 lncRNA upstream 46413 23472413 ~ 23472728 (-) True G72889
TU107891 lncRNA upstream 111504 23537504 ~ 23540103 (-) True G72909
TU107903 lncRNA upstream 132753 23558753 ~ 23634077 (-) True G72918
TU107885 lncRNA upstream 172987 23598987 ~ 23600892 (-) True G72904
XM_043249020.1 mRNA downstream 8272 23390692 ~ 23410990 (-) True LOC122351748
XM_043249532.1 mRNA downstream 129123 23281514 ~ 23290139 (-) True LOC122352042
XM_043249636.1 mRNA downstream 175015 23005838 ~ 23244247 (-) True hdac4
XM_043249556.1 mRNA upstream 138379 23564379 ~ 23649560 (-) True LOC122352061
XM_043249021.1 mRNA upstream 290109 23716109 ~ 23717055 (-) True LOC122351749
XM_043249022.1 mRNA upstream 488681 23914681 ~ 23918652 (-) True LOC122351750
XM_043248342.1 mRNA upstream 517985 23943985 ~ 23960093 (-) True grb14
XM_043248989.1 mRNA upstream 555970 23981970 ~ 24029114 (-) False cobll1b
TU107329 other downstream 907955 22459396 ~ 22511307 (-) False LOC122351746
TU107316 other downstream 1112249 22299172 ~ 22307013 (-) False LOC122351746
XR_006251764.1 other downstream 1195595 22171463 ~ 22223667 (-) False cerkl
TU107092 other downstream 1692442 21709288 ~ 21726820 (-) True G72363
TU106615 other downstream 2915372 20489164 ~ 20503890 (-) True G71938
TU107929 other upstream 504207 23930207 ~ 23931329 (-) True G72930
TU107931 other upstream 530219 23956219 ~ 23960325 (-) False grb14
TU108001 other upstream 794522 24220522 ~ 24280708 (-) False G72978
TU108002 other upstream 805235 24231235 ~ 24280708 (-) False G72978
TU108000 other upstream 845455 24271455 ~ 24280708 (-) True G72978

Expression Profile