RNA id: XM_043249540.1


Basic Information

Item Value
RNA id XM_043249540.1
length 1838
RNA type mRNA
GC content 0.42
exon number 5
gene id ralba
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 18028354 ~ 18038668 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GACGTCATATCCCGTTCATTTGCATGTCCTGAGGGTGGGGTATATGGCAGCAACGACAGCTTCGGAGAAACTACAGGGTGTATGAGTCGGAACAGGCGATTAATGCGTTCCACAAGATAGCATAAGAGACAGAGGAGGACAAAGTCACCGAGAGGTGGTGCCAGATTGTCTGTGGGCGTCTTGTGGTGTACCCGAGGAAGGCTATTAGACATGGCAGCCAATAAGAGTAAGGGTCAGAGCTCTCTCGCCCTGCACAAGGTCATTATGGTGGGCAGTGGAGGCGTAGGAAAATCTGCTCTTACCCTTCAGTTTATGTATGATGAGTTCGTTGAAGATTATGAGCCCACAAAGGCTGACAGCTACAGGAAGAAAGTGGTGTTGGATGGAGAAGAGGTGCAGATTGACATTTTGGACACAGCTGGGCAGGAAGATTACGCGGCTATCCGAGACAACTATTTCCGTAGCGGAGAGGGTTTCCTGTTGGTGTTCTCCATAACGGAGCACGAGTCTTTCACGGCCACAGCAGAATTCAGGGAGCAGATCCTGCGGGTTAAAGCCGAGGAGGATAAGATTCCGCTGCTTTTGGTTGGAAATAAGTCAGACCTTGAGGATCGGAGGCAGGTTTCAGTGGACGAGGCCAGAGGAAAAGCAGAAGAATGGGGTGTGCAGTATGTAGAGACGTCCGCCAAGACGAGGGCCAATGTGGACAAGGTATTTTTTGATCTAATGAGGGAAGTCCGTGCTAAAAAGATGTCAGAAAATAAGGACAAAAACGGGAAgggaaaaaataagaagaataagAAGAGCTTCAAAGAGAGATGCTGTTTACTTTGAACTACACTTGGACTTTTCCCCATAAAATCTACTTGCAACTCTGAGGGGAAACTCCatcagagactttttttttttttaattaaaatcaaaacttgATTAGTAAGGTTTTGTACTTGTCAAGGTAAGCCTTCATCACAGTCTTTCATTCCCttagttcatttcaaataaCTAGACTAAGATTGAATGGTATGCGTACTTTTTAATGGAAGATGACCACTATATGGCTACTGGTCGACGACTGTGGCACTTTAGGACTTCTTAAAATGTAGTTGGCCGACATGCGCCCAACACTAATTTTACTGCTCTGTAATCCATCTTTCCCTTGCCCCTTACAATTTTAAGTAGAAATCCTCTTTATTGGGCAAaggtatttctttctttttttttttttttttttttgcacgccTTTTTGAGtattgttagatttttttaaaatctaaccATTTTATTTCAACACCTGTTGACACCATCAATGCATAGAGTTTTTGTAGATCAAGATGTATTGTGGTAGTACTGTGGTTTTTAAACTCTCTATGAAAGACACCCTTGAAAAGCACACGTGGTATTGAGGACGGAGTGCCCAAGCATGGACTAATAGTGCCACCCGGTGGTTCATAAATATATCTTTTCAGGAAGTCCTCATGCCTAATTGCAAGTTACTAACCTCTGTGAACTGATCTGCCTTTATGCTTTCgtgttttaattgaaatatttttgtaggaCTTGTTACATTTCCACCACTGTCTTATGAGAAGAATGTATTCTGTGTGAAAATGTGCCAACAAGCACCATGACTAAAACCGCTTCGCTGCATTTTCAGAACGTAAGACACGTTTGTTTAGCACTCTGAGCTCGGAGCTGCGGTTTCACCAGTAATTTAAAACTGCTCTTTTATACAAATATCACCTAACCTAGACTGCAATTTGTATTGTAGTTTTCCACTGGCTTTTAGAAGAAAAACTTCGAAGTATGTtgccaaataaacattttcttctcCTTTTGTA

Function

GO:

id name namespace
GO:0007265 Ras protein signal transduction biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0005886 plasma membrane cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07835 RALB; Ras-related protein Ral-B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251849.1 lncRNA downstream 292435 17733203 ~ 17735919 (-) False LOC122352098
XR_006251848.1 lncRNA downstream 292435 17733203 ~ 17735919 (-) True LOC122352098
TU105360 lncRNA downstream 335534 17665519 ~ 17692820 (-) True G71194
TU105352 lncRNA downstream 366909 17661216 ~ 17661445 (-) True G71190
TU105330 lncRNA downstream 382434 17644438 ~ 17645920 (-) True G71175
TU105518 lncRNA upstream 183646 18222314 ~ 18226787 (-) True G71293
TU105535 lncRNA upstream 212592 18251260 ~ 18366238 (-) False sema5ba
TU105536 lncRNA upstream 212592 18251260 ~ 18264500 (-) False sema5ba
TU105579 lncRNA upstream 469772 18508440 ~ 18510009 (-) True G71339
TU105581 lncRNA upstream 472505 18511173 ~ 18511528 (-) True G71341
XM_043248852.1 mRNA downstream 376233 17649975 ~ 17652121 (-) True dnajc28
XM_043248995.1 mRNA downstream 453980 17559528 ~ 17574374 (-) True zp2l1
XM_043248036.1 mRNA downstream 506794 17373161 ~ 17521560 (-) False ncam2
XM_043248035.1 mRNA downstream 506795 17364193 ~ 17521559 (-) False ncam2
XM_043248033.1 mRNA downstream 506795 17364193 ~ 17521559 (-) True ncam2
XM_043249405.1 mRNA upstream 158458 18197126 ~ 18205461 (-) True hspbap1
XM_043248996.1 mRNA upstream 212568 18251236 ~ 18366267 (-) True sema5ba
XM_043249266.1 mRNA upstream 388404 18427072 ~ 18492873 (-) True adcy5
XM_043249267.1 mRNA upstream 388404 18427072 ~ 18492869 (-) False adcy5
XM_043249567.1 mRNA upstream 455418 18494086 ~ 18499894 (-) True hacd2
TU105258 other downstream 772863 17235872 ~ 17255491 (-) True G71118
TU104984 other downstream 1204579 16817140 ~ 16823775 (-) True G70986
TU104983 other downstream 1204660 16817140 ~ 16823694 (-) False G70986
TU104521 other downstream 2256490 15771421 ~ 15771864 (-) True G70663
XR_006251733.1 other downstream 2628917 15389849 ~ 15399437 (-) False tmtc4
XR_006251863.1 other upstream 531087 18569755 ~ 18569882 (-) True LOC122352185
TU106113 other upstream 1681830 19720498 ~ 19721737 (-) False ankar
TU106134 other upstream 1757589 19796257 ~ 19804599 (-) False glsb
XR_006251780.1 other upstream 1843156 19881824 ~ 19893315 (-) False mfsd6b
TU106614 other upstream 2450496 20489164 ~ 20503890 (-) False G71938

Expression Profile