RNA id: XM_043249543.1


Basic Information

Item Value
RNA id XM_043249543.1
length 2234
RNA type mRNA
GC content 0.44
exon number 10
gene id zc3h15
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 8793317 ~ 8797935 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCCAGAATGCATCGCGGCTGCTAGTGCGGTTAGCCTACGCTTACCTGTGGACATACGGCATTATACACACGGCGTCAGGGTTACcatagttttatagtttgtctTAAGCGATATGCCTCCGAAAAAGCCAGCTCAAGCTACAGGCAGTAAGAAAACCcaagagaagaagaaggagaagatcATTGAGGATAAAACCTTtggactgaaaaacaaaaagggagCTAAACAACAGAAGTTTATCAAAGCTGTGACACAGCAGGTCAAGTATGGACAGCAGAATTCACGACAGATCGCTGCTGCTGAAgctgaaaagaacaaaaagaaagacgACAAGAAGAAGGAGTTGTCTGAGTTGAATGAGCTTTTCAAGCCAGTGGTGGCAGCTCAGAAAGTCAGCAAAGgtGTGGATCCCAAGTCTGTGCTGTGTGCTTTCTTTAAACAAGGCCAATGTACCAAAGGTGATAAGTGTAAATTCTCTCATGACCTGTCTTTGGAAAGGAAATGTGAGAAAAGGAGCGTGTATGTGGATGGCAGAGATGATGAGCTGGAGAAAGACACTATGGAAAACTGGGATGAAAAGAAACTTGAGGAGGTGGTGAACAAGAAGCATGGAGAGGCTGAAAAGAAGAAAGCTAAGACCCAAATTGTGTGCAAGTATTTCCTTGATGCTattgaaaacaacaaatacgGCTGGTTTTGGGTTTGTCCCGGCGGAGGTGACAACTGTATGTACCGCCACGCTCTTCCTGTGGGCTTTGTCCTGAAAAAAGacaagaagaaagaagagaCAAACGAGGAGGAGATCTCGCTGGAGGATTTGATAGAGACTGAGCGAGCTGCTCTGGGAGCAAATGTCACCCGAATTACTCTGGAAACATTTTTGGCCtggaagaaaaggaaaaggcaAGAGAAACTGGCTAAAGCAGAGCAGGacatggagagaaagaaagccgACTTCAAAGCTGGCAGGGcgtttgggGTCAGTGGAAGGGAAGTGTTTGAGTTCAGACCTGAGCTTGTTAATGATGACGACGAGGAAGCCGATGATACAAAATActctgatgaagatgaagatgatgatgctGAGATTTATAATGAGGTGGAGGAAATAGACGAGGTTCAGGACATTGACATTGCTAGATTTATCCCTAAAGAGGTGGATAATGCGGGTATAACAGTGGCGTCTGCAGACAGGTTTAGTGCCAGAGCTCCTCCAACAAATGACACGGATGATAATAAATTGAGCGAGGCATCAGGCGGAGCTATGGAGAACGGAGAGCACAGTGAGGACCAGACGCTGGAGGACGGAGAAACTAATGAGGAGTCGGAGGCGGTGCCTGTAGATGAGAACCTCTTCACCGGGGAGGACCTAGACGAACTAGAAGAGGAACTCAACACACTGGACCTGGACGAGTGAAGGCTGGGACTGTTGCATCATTCATGAACTACACATGGCTTGATGTGAATGACAATATTTTCACAAATAGCTACCACCAGAATTGCCATGTCAGAAGCCGCTCTGCCTGCAATATGCACCCTCATCACTCGATGTCCCGGGACGCTAGAGGAGAGACTGGAGAAGACGTGGCTCTTGTTCTTTctcttgatttaatttttttttttttttaattgcagtctACCCCAAAAGCACAGTCAGGTGAGGGCTTGGTTCTTCAGCAGGAGCGTTCTTCAAATATTTATGAGGCTGTTGATTATTTGATGTTTCTGCATTCTGTTTTGAAAGATTTGATTAAATCGGTCTTTGTAAGGTGATCCAGCATAAATCCTCTTCAAGACGTTCAAGCACTATTGGAATCCGGTTTCCTCTTCCTTCTGCTGTTGAAATGTtgctttaatgaaaacaaaggtTCAGTCAATCGGtctcatttcagtttttaactTGTAACCAACTGCATGCCTGTATCAGGATCAGAATGTAAAGGCGACTAAGTGTGATGCTGACATTCAAGTGTTCAATAATCAGTTGATCAGATTGAGATGTTGAATGTGAAGTCTCTCGGATGCAGATTGGGCATCTGGCCTTACTGAAGGAGATGTGGATGATGACATTGTTACTAGTAATGTTTTGGAGTGGTTTCAAgaagtgtgagagaaagaggtgAGCTTGTGCGATGAACTAGTAACGTGTCTGTCCTTTTTGtattcagttgttttaaattgcccTCCCACCAACACCCCACaagaaattgtaaataaaaggaTATCAGATACTG

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0046872 metal ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251751.1 lncRNA upstream 178333 8600724 ~ 8614984 (+) True LOC122351403
TU101678 lncRNA upstream 287174 8502756 ~ 8506143 (+) False igf2bp2a
TU101562 lncRNA upstream 570500 8222587 ~ 8222817 (+) True G68678
TU101545 lncRNA upstream 587354 8203853 ~ 8205963 (+) True G68668
TU101216 lncRNA upstream 939039 7853481 ~ 7854278 (+) True G68446
TU101758 lncRNA downstream 28277 8826212 ~ 8827046 (+) True G68808
XR_006251839.1 lncRNA downstream 61538 8859473 ~ 8860379 (+) True LOC122352063
TU101765 lncRNA downstream 69204 8867139 ~ 8868277 (+) False fev
TU101845 lncRNA downstream 249525 9047460 ~ 9078537 (+) True G68879
TU101846 lncRNA downstream 265185 9063120 ~ 9064676 (+) True G68880
XM_043249719.1 mRNA upstream 91022 8651167 ~ 8702295 (+) True znf804a
XM_043248052.1 mRNA upstream 223320 8566454 ~ 8569997 (+) True nup35
XM_043248716.1 mRNA upstream 264446 8520934 ~ 8528871 (+) True zgc:162707
XM_043248712.1 mRNA upstream 273971 8510712 ~ 8519346 (+) True ehhadh
XM_043249497.1 mRNA upstream 288521 8460744 ~ 8504796 (+) False igf2bp2a
XM_043248053.1 mRNA downstream 3362 8801297 ~ 8824391 (+) True itgav
XM_043248054.1 mRNA downstream 29755 8827690 ~ 8831902 (+) True umps
XM_043249421.1 mRNA downstream 65452 8863387 ~ 8866305 (+) True cryba2b
XM_043248266.1 mRNA downstream 69162 8867097 ~ 8871633 (+) True fev
XM_043249163.1 mRNA downstream 168926 8966861 ~ 8976999 (+) True chpfa
TU101615 other upstream 359834 8431145 ~ 8433483 (+) False sumo3b
TU101608 other upstream 450638 8341298 ~ 8342679 (+) False si:ch211-167j6.3
TU100736 other upstream 2828437 5962967 ~ 5964880 (+) False LOC122351907
TU100723 other upstream 2907564 5883927 ~ 5885753 (+) True G68097
unassigned_transcript_1464 other upstream 3335788 5457458 ~ 5457529 (+) True trnam-cau_112
TU101764 other downstream 66714 8864649 ~ 8865897 (+) False cryba2b
XR_006251841.1 other downstream 344657 9142592 ~ 9149666 (+) False si:ch1073-416j23.1
XR_006251842.1 other downstream 344657 9142592 ~ 9149661 (+) False si:ch1073-416j23.1
XR_006251853.1 other downstream 645190 9443125 ~ 9556647 (+) False thsd7ba
XR_006251850.1 other downstream 1530796 10328731 ~ 10395230 (+) False il1rapl1a

Expression Profile