RNA id: XM_043249549.1


Basic Information

Item Value
RNA id XM_043249549.1
length 420
RNA type mRNA
GC content 0.42
exon number 4
gene id LOC122352057
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 19736033 ~ 19737211 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CATTCGTGTTCGACGAACACTTTGCATGTGGAAATGTTTCCTTAAATTTTCCGCGTCGTTTTGATAGAAAATGTCTTCTAAAAACAGCCAGAGAACGGAAGCTGGAGCTCAAGAAGAGCGTGCGCAAAAAGAGGAGTTAAACAAGAAGataaaagaacaaaagattGTTGTTGACGAGTTGAGCAATCTGAAGAAAAACAGGAGAGTGTATACCCAGCAGCCCAACAGCAATATATTCTTCCTAGCAGATAAAGGGGAGACTCTCGGCGCTTGTAAAAAGGATCTGGATAACATGAGAAAAGAATATCAAGATATATAGTGCCTTGAGATCATGTGTGGGATCTGCTGTGTGGTCAGTTTGACCACACCACATGATCCACTGGATAAGCATGTCCATGAAAATCTCAAACACAGAGGGCC

Function

GO:

id name namespace
GO:0044424 obsolete intracellular part cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106115 lncRNA downstream 4794 19730736 ~ 19731239 (-) False ankar
TU106074 lncRNA downstream 23849 19709384 ~ 19712184 (-) True G71645
XR_006251727.1 lncRNA downstream 54634 19674731 ~ 19681399 (-) True LOC122351289
TU106096 lncRNA downstream 64869 19667000 ~ 19671164 (-) True G71667
TU105978 lncRNA downstream 192186 19537741 ~ 19543847 (-) True G71587
TU106128 lncRNA upstream 54036 19791247 ~ 19791560 (-) True G71692
TU106135 lncRNA upstream 62401 19799612 ~ 19807087 (-) True glsb
TU106137 lncRNA upstream 62401 19799612 ~ 19804599 (-) False glsb
TU106132 lncRNA upstream 63196 19800407 ~ 19807087 (-) False glsb
TU106138 lncRNA upstream 70655 19807866 ~ 19810123 (-) False glsb
XM_043248068.1 mRNA downstream 4239 19719942 ~ 19731794 (-) True ankar
XM_043249432.1 mRNA downstream 19590 19713485 ~ 19716443 (-) True adat3
XM_043249042.1 mRNA downstream 27063 19684890 ~ 19708970 (-) True pms1
XM_043249391.1 mRNA upstream 13331 19750542 ~ 19766793 (-) True wdr75
XM_043249392.1 mRNA upstream 13331 19750542 ~ 19766787 (-) False wdr75
XM_043248998.1 mRNA upstream 59041 19796252 ~ 19829475 (-) False glsb
XM_043248999.1 mRNA upstream 96709 19833920 ~ 19852625 (-) True nab1b
XM_043248788.1 mRNA upstream 144339 19881550 ~ 19893314 (-) False mfsd6b
TU106113 other downstream 14296 19720498 ~ 19721737 (-) False ankar
XR_006251863.1 other downstream 1166151 18569755 ~ 18569882 (-) True LOC122352185
TU105258 other downstream 2480542 17235872 ~ 17255491 (-) True G71118
TU104984 other downstream 2912258 16817140 ~ 16823775 (-) True G70986
TU104983 other downstream 2912339 16817140 ~ 16823694 (-) False G70986
TU106134 other upstream 59046 19796257 ~ 19804599 (-) False glsb
XR_006251780.1 other upstream 144613 19881824 ~ 19893315 (-) False mfsd6b
TU106614 other upstream 751953 20489164 ~ 20503890 (-) False G71938
TU106615 other upstream 751953 20489164 ~ 20503890 (-) True G71938
TU107092 other upstream 1972077 21709288 ~ 21726820 (-) True G72363

Expression Profile