RNA id: XM_043249561.1


Basic Information

Item Value
RNA id XM_043249561.1
length 3028
RNA type mRNA
GC content 0.47
exon number 5
gene id nck2a
representative False

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 6896477 ~ 6943442 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

aaaaaaagtataaagaGATTTAACGTCCGAGCAGCACCTCCGTCGACATCACCGCCGGAGCTCTCGCGCGCCTCCCGCTCGCGCCGAGCCACGGCAGTGGTGACGTCACCCGCGCATTGGCTCGCGCTGGCTGAGAGCGAGAGCTCGAgcagaccgagagagagagagatagagaaagagagagggagagagagcagcagcagcagcagcagcagcagcccgGGCCCACGGACAAAAACTCGCCGAAAAGGATTTACATTCGCTACGTATCGTCCCACCAATCCGAGTCTGCAAAGAGAGCGCGTTTTCCTGCTCCCCTAAAGCCCGATCTGTCAGGAGTTGCAGCAAGCGTGCTGTCATCCTACTTCTTGTAAAGACGAACTGTTCTATTTTTGGACGAGGGCCGTGTTGTCGTGGAGGTAGCGGAGAGGAGATACGCCGGGCAGTGGGACTCGATGAAAGATGACAGAGGAGGTGATTGTTATAGCTAAGTGGGACTACACAGCTCAGCAAGACCAGGAACTGGACATCCGGAAGAACGAGCGCCTGTGGTTGCTGGATGATTCCAAGACCTGGTGGAGAGTCCGCAACGCATCCAACCGCACCGGCTACGTTCCCTCTAATTATGTTGAGCGCAAAAACAGTCTGAAGAAAACCTCACTAGTGAAGAACCTGAAAGACACTCTCGGCCTTGGAAAAACGAAAAGGAAGACTAGTGCTCGTGATCCATCTCCCACACCCAGCACAGAGGCAGAGTACCCATCCAATGGCAGCGCAGGAGGAGGTGGAGTGGGCGGGGCCGAGCGGATCTATGACCTGAACATTCTCGCTCTGGTGAAGTTTTCTTACGGAGCTGAGCGTGACGATGAACTCAACCTCATAAAAGGGGAGAGGGTGGTCGTGATGGAAAAGTGCAGTGACGGCTGGTGGAGGGGTAGCCATGACGGCCGTGTAGGATGGTTCCCATCCAACTATGTCCAAGAGGAGATGGGATATGCAGACCACGATAGCGTTTTTGGGGACTCGTTGGGGGGCTTCCGGTCCTTGAAAGTGGGGCAAGGCGCAGCGATGGCCAACGGTCGCCCTGGAGGCTCTGGGACCTCCATTCTGCATGTGGTCCAGACTCTGTACCCCTTCAGCTCTGTCACAGAGGAGGAACTGAACTTTGAGAAGGGGGAGACGATGGAAGTTTTGGAAAAGCCAGAAAATGACCCAGAGTGGTGGAGGTGTAAAAACAGTCGTGGCATGGTCGGTCTTGTGCCCAAGAACTATGTGGTAGTACTCAGTGATGGGCCAGCAGCGAAGGGTTTAGGGTCAAGTCACGGCTCCCCTCACATCAGTCACACAGTTCCTTCACGTACAGGCAAATTTGCTGGAAAGGATTGGTACTATGGTAATGTGACACGGCACCAAGCTGAGTGTGCACTTAATGAGAGAGGAGTGGAAGGGGACTTTCTCATACGGGACAGTGAGTCATCGcccAGCGATTTCTCAATTTCTCTGAAGGCTGTGGGAAAGAACAAGCACTTCAAGGTGCAGCTGCAGGACGGAGTATACTGCATTGGTCAGCGGCGTTTTAGCAGTATGGATGAGCTTGTAGAGCACTACAAGAAAGCGCCCATCTTCACCAGTGAGCAAGGAGACAAACTATATCTGGTTAAGCCCCTAGCCTGAATTTGTCACGGACGTTACCTCTCCCCCTGTGCACCTCTGTtcccttcttttcttcttttttctcttgCTCCTTTCAGAAGCAACTTCAAGAACTATTTGACATTTCAAAGCCCAACATTGCCTCCACTCCGGTAGGGAGCAGTAGCAActtattcttttaaacaaagaTGTCCGTCCTTGATGTACATgccctgttttttttatgatttagagTCACTTTGGCGGTTTTggtaaagaaaaacagaatggCATTTCACTGAGTAACATCTACAGAACTCTCTCCCAGCCTTTGGACAGCTGTTCTTCTGCTCTTCCTGTCTCTGGTTAATCCACAACCTCAACCCGCATTACATCGGTTTACATTTCTCTGCTCAAAAGAATTACAGTGTGTAAATTTGTACTGAATTAGCAGAGGAGAACAGACTCATGTGCATGTCCTTAACCTTGATCCTTCAAAGCAGGTGAGCATATGAAGAGCGTGATTTGGGGTTTCTCCATTCATCGAGCTCATCCAAAGGCCATGCAACTTCTCGACGCATGTTCACGCTGCAGCTGCCTATCGCATTACACTGTGTGAATCTGAATCCAAACTGATAATTGAGATGACAGTCAGATTTCACCCTGAAAAAAGCGGTGCTGTCCCATCCTCTGAGCCTTTACAAACACTGTTTTTGCATCTGCAGTCCCATCGTGCATACATGAAGACAGTGTTTGGACTTCTCTGCTCCTATAAATGTGGACATACACAGCTTTCCAGGTATATCTCTTGGATCCGAGTCACTTCAGGGTTTCTTCAGAATCAGGGTACTTCATAAAGGGAGATTAATGCCGCAGTTATGACCGGCGTTAAATGAGAtggggagaaagagaaagagattgtAGCTATTAAGAGTAGTTTCTGTAGACAAGGAGAAAGTTTGAATGTGTGTCCTTTCAACCAAATGTGCCACCCACTTCCAGTTCTGCTACTATTGATGTCTTATTGCACCTCACCAACACGTCTTCTCTGCTCTCAGTAACACATAGTTGATTGTGAACACTAATTCAAGagtaataaaacaatgattttatttctttacttttgttAATTACTCAAAGTCTGTTTACCAATAAGCGTGTTGGTCAAGgggttttcagatttttttttttaatctatttgtCTGAATGTTATTGAGCAATGTTATTTAATTCCTCTTTCcactgtatgtacatatataaatatatattaaaaaaaaaagatatggtGCATATATGAATCGTTTAGATCCAGCATTATGGTACTGTATTGAGGACAGTGTGGTGAGAATTGAAATacttttgttcaataaaagttttgcaaaataacttaaaatga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251826.1 lncRNA downstream 1080 6892652 ~ 6895397 (-) True LOC122351994
TU101086 lncRNA downstream 13501 6882585 ~ 6882976 (-) True G68357
TU101051 lncRNA downstream 83462 6809848 ~ 6813015 (-) True G68328
TU101058 lncRNA downstream 102102 6793402 ~ 6794375 (-) True G68333
XR_006251776.1 lncRNA downstream 119503 6775286 ~ 6776974 (-) True LOC122351577
XR_006251860.1 lncRNA upstream 39236 6982678 ~ 7035361 (-) True LOC122352164
TU101108 lncRNA upstream 202998 7146440 ~ 7153954 (-) True LOC122351350
TU101111 lncRNA upstream 202998 7146440 ~ 7153954 (-) False LOC122351350
TU101258 lncRNA upstream 384387 7327829 ~ 7341494 (-) True G68473
TU101275 lncRNA upstream 437848 7381290 ~ 7381508 (-) True G68489
XM_043249722.1 mRNA downstream 8103 6883488 ~ 6888374 (-) True ecrg4a
XM_043249721.1 mRNA downstream 8376 6883488 ~ 6888101 (-) False ecrg4a
XM_043248737.1 mRNA downstream 64223 6807329 ~ 6832254 (-) True tmtops2b
XM_043249753.1 mRNA downstream 169679 6719754 ~ 6726798 (-) True si:ch73-390b10.2
XM_043248124.1 mRNA downstream 188269 6686218 ~ 6708208 (-) True LOC122351204
XM_043249415.1 mRNA upstream 21787 6965229 ~ 6969207 (-) False c9h2orf49
XM_043249414.1 mRNA upstream 21787 6965229 ~ 6969207 (-) True c9h2orf49
XM_043248245.1 mRNA upstream 26375 6969817 ~ 6974908 (-) True gpr45
XM_043249731.1 mRNA upstream 44281 6987723 ~ 6990768 (-) True pou3f3a
XM_043249730.1 mRNA upstream 44281 6987723 ~ 6990767 (-) False pou3f3a
TU100887 other downstream 635408 6246900 ~ 6261069 (-) True G68188
TU100850 other downstream 796594 6099347 ~ 6099883 (-) False LOC122351979
TU100782 other downstream 852552 6043275 ~ 6043925 (-) True G68124
TU100767 other downstream 973657 5919757 ~ 5922820 (-) False LOC122351463
XR_006251815.1 other downstream 1526888 5349955 ~ 5369589 (-) False LOC122351925
TU101110 other upstream 127543 7070985 ~ 7148620 (-) False LOC122351350
TU101496 other upstream 1071007 8014449 ~ 8018105 (-) False LOC122351623
XR_006251804.1 other upstream 1135694 8079136 ~ 8094847 (-) False als2a
unassigned_transcript_1465 other upstream 1397501 8340943 ~ 8341015 (-) True trnak-uuu_106
TU102057 other upstream 2964746 9908188 ~ 9910178 (-) True LOC122351483

Expression Profile