RNA id: XR_006251842.1


Basic Information

Item Value
RNA id XR_006251842.1
length 1890
RNA type transcript
GC content 0.48
exon number 15
gene id si:ch1073-416j23.1
representative False

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 9142592 ~ 9150093 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTGACGCATTTAAAGCGGTTTGTTTGAGTTTGGATCACCTACTGAAGCGATCATGGGGGATCAGTTTATACGAGAAGTCCTCAGTCTGTGTTTGCAAAGGCTTGCTATTGAAGAAGCGTCCAACTCGGAGCTCGAGCTCATTGAGGTGGTGAGGCATTTTGAAACTGCCCGGAAAAAATGGCTTCACGCAGAACTGgagttaaaaaaacagaaagagctcCTGGTAAAATCTGATGTGGCTCGAGCTGCTCTGGAGGTCAAGCTCAAACATGCACGGAACCAGTTGGACGTGGAGATCAAGAAGCGCTACAAAGCTGAAGCGGACTACCAGTGCCTGGAGCGGCAGATGCAGTTGATATGTGACGTACTGGTGCATGACAGCAAGTCAAGCGCTTGCCTCAACGATGAGCAGAGGTCAATGCTGACCAGCTTCAGTCACAAAGGAGCCAGTGTCCCACAACACAGAGGGAAACGGTTATCGGTGATTGATGAGTCCTCCTTCCTGTCGCATTCAGACATTAGTTATGACAGAACGGATGATGATTTGGACTTGGACAACACAGCGTTTGTTAAGCCTCTCAAGTCAAGAGCTCGCGAGAGAAGACGTTCATCAATGGGACCAAGTGTCGGTCCTCCAATTCAAAAACGAGGAAGAGTAAGCGGTCGTTCAGGAGATCAGCTGGGGTCTAGACCACTGGAGAAGGAAATCGAGACGACTGTTGTGAAGGCGTCTGTCACTACCCCGGAGACTAGAGGTCAGATTCACATGGTTATAGACATAACCCAGGAGACTCCAGAATATCAGTCCAGGGCTctcagaaatgaacattttcctTCTGTTGATGAACAAACGTCTGTGTGGGCACACAGTGAAGtcacagaggctgaaacagtcGTTGAAATGGAGGTGAGCGCCCCCCAGCCAGCCGTCCCTCAGGACCTCACGCCCACCGTGGATAAGACTTTGCAGCATGTTTTCCAGCAAAAAACAGTGATTCGTCCAGAGACATGCATGCCTTGTGGGAAGAGGATTCGCTTTGGGAAGGTGGCCATAAAATGCAGAGACTGTCGAGTGGTGAGCCATCCTGAGTGTAAACAGCTATGTGCGGATAAATGCAGTCCTATTGCTCACGGTTCAGCACAGTCCAACGAGGAGACTTTAGAGAGCTTCGCCCCCTCCACACGTCCAAGGATTCCCTCTCTGATTGTTCAGTGTGTTCATGAAATTGAGAGAAGAGGACTTGAAGAGAAGGGTATTTACAGAGTGCCTGGAGGAGAGCGGATGGTAAAGGAACTGAGGGAGAAATATGTGTCTGGGAAAGGCCCTCTGATGCTCCACAAAGTAGAAGAGGTTCATGCTGTCTGTGGACTCCTCAAAGACTTCCTGAGGAAACTCAAGGAGCCTCTCATAACATTTAAGCTTCACAGAACATTTATGGAAGCTTCTGAGATGGCTGATGAAGACAAGAGCAtagaaacattaataaagacTATCAAAGAGTTGCCGCAGCCAAACAAAGACACCCTGGCCTTCCTGATACTGCATTTGCAGAGAGTAATGCAGAGTCCGACGTGTCAGATGGACCAGAATAACTTATCCAGAGTGTTTGGGCCCACTGTCATTGGTCATGGGTTGCTAGAACCTTCTCCCATGACTATTATGAGAGACACAAACACCCAACCCAAAATTTCTGGGAAGGCCTTCTAGCTGAGAAGGCGGATCCGCTCATGCCTTCTGTGGTGGATTCCAACGTTGCCAGTGTCTGTCCAAGCACTAGCAAAGATAAGATATTCAAACCTCTGACCTCTCCTGAGCTGAGCAAATACTCTAAGACTACATCCGGTGGCTCAATAAAAGGTCGGATCAAGCACTTTGGTGGCACTTTCAAT

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0046872 metal ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101845 lncRNA upstream 64055 9047460 ~ 9078537 (+) True G68879
TU101846 lncRNA upstream 77916 9063120 ~ 9064676 (+) True G68880
TU101765 lncRNA upstream 274315 8867139 ~ 8868277 (+) False fev
XR_006251839.1 lncRNA upstream 282213 8859473 ~ 8860379 (+) True LOC122352063
TU101758 lncRNA upstream 315546 8826212 ~ 8827046 (+) True G68808
TU101861 lncRNA downstream 8615 9158276 ~ 9160821 (+) True LOC122351827
TU101871 lncRNA downstream 26663 9176324 ~ 9178926 (+) True G68895
TU101872 lncRNA downstream 31090 9180751 ~ 9184568 (+) True G68896
TU101875 lncRNA downstream 31243 9180904 ~ 9194303 (+) True G68897
TU101878 lncRNA downstream 91277 9240938 ~ 9241387 (+) True G68900
XM_043249163.1 mRNA upstream 165593 8966861 ~ 8976999 (+) True chpfa
XM_043248266.1 mRNA upstream 270959 8867097 ~ 8871633 (+) True fev
XM_043249421.1 mRNA upstream 276287 8863387 ~ 8866305 (+) True cryba2b
XM_043248054.1 mRNA upstream 310690 8827690 ~ 8831902 (+) True umps
XM_043248053.1 mRNA upstream 318201 8801297 ~ 8824391 (+) True itgav
XM_043249171.1 mRNA downstream 6384 9156045 ~ 9159759 (+) False LOC122351827
XM_043249170.1 mRNA downstream 6390 9156051 ~ 9159985 (+) False LOC122351827
XM_043249639.1 mRNA downstream 293464 9443125 ~ 9566997 (+) True thsd7ba
XM_043249642.1 mRNA downstream 293464 9443125 ~ 9566997 (+) False thsd7ba
XM_043249641.1 mRNA downstream 293464 9443125 ~ 9566997 (+) False thsd7ba
TU101764 other upstream 276695 8864649 ~ 8865897 (+) False cryba2b
TU101615 other upstream 709109 8431145 ~ 8433483 (+) False sumo3b
TU101608 other upstream 799913 8341298 ~ 8342679 (+) False si:ch211-167j6.3
TU100736 other upstream 3177712 5962967 ~ 5964880 (+) False LOC122351907
TU100723 other upstream 3256839 5883927 ~ 5885753 (+) True G68097
XR_006251853.1 other downstream 293464 9443125 ~ 9556647 (+) False thsd7ba
XR_006251850.1 other downstream 1179070 10328731 ~ 10395230 (+) False il1rapl1a
TU102754 other downstream 2333776 11483437 ~ 11489996 (+) False LOC122352020
TU102836 other downstream 2896838 12046499 ~ 12155804 (+) True G69527
TU103038 other downstream 3477874 12627535 ~ 12629535 (+) True G69670

Expression Profile