RNA id: XM_043249576.1


Basic Information

Item Value
RNA id XM_043249576.1
length 2060
RNA type mRNA
GC content 0.42
exon number 13
gene id gmppaa
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 9150192 ~ 9155280 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

cCTTCCAGTACTTCCGGAACTGTCAACGCGTGAACTCATTAGATTAGATATAAACTGCTGTCATGTTGTTTGATTTGGAATTGGGtagataaacaaatattttctttgtattttttgcacGTTAAAACCAAACATGGAATGACATTTATGCATCAAATCGATTTACTGAAGGCTCACTGATCGACCTCAGCTTACATCAACATCAGCTGTATTTTTAGAGCTTTTGGATTTTGGggcataattatatatataataagaacaAGTAATCATGCTGAAAGCTGTTATTCTTATCGGAGGTCCTCAAAAAGGCACCCGGTTTCGTCCTCTGTCTTTCGAGGTGCCCAAACCTCTGTTTCCAGTGGCTGGAGTGCCAATGCTACAACATCACATTGAAGCCTGCTCTAAGctTCCAAATATGAAGGAGATCTTGCTTATTGGCTTTTATCAGCCCAATGAAGAACTAAACAGATTTTTGTCATGCGCCCAACAAGACTTCAAAATATCAATACGATACCTTCAGGAGTACGCTGCTCTGGGCACTGGAGGAGGAATTTACCATTTCAGAGATCAGATTCTGTCTGGCAGTCCAGAAGCATTTTTTGTCATGAATGCTGACGTGTGCTCAGAGTTTCCTCTTCCAGAGATGCTGGACTTCCAGAAGGAGCATGGAGACGCTTACAGCTTTGTCATCCTTGGTACCACGGCTAACAGAAAACAGTCCCTGAACTACGGCTGCATTGTTGAGAATGAACAAACTGATGAGGTCTTGCATTATGTCGAAAAGCCCAGCACCTTCGTGAGTGACATAATCAACTGTGGGATATACCTGTTCACTCCGGAGATATTCCAGCACATTGGAGAGGTTTTCCAGAAGAACCAACAGGACATGCTCTTATATTACGATGAGGGAGAGGAGCAGTCCAACGGCTGGCACCGGGCAGAGGTGATCCGTCTGGAGCAGGACATCTTTACGGCGCTGGCAGGCCAAGGCAAATTATATGTGTACAAAACAGACCTCTTCTGGAGCCAAATCAAATCTGCAGGATCTGCGATCTATGCGAGCCGTTTGTATCTTAGCCAGTATCACACAACACATCCAGAGAGGTTAGCTACTAATAGAGAAGGAGGGCCAAAGACCAGAGgacATGTTTATATACATCCAACTGCCAATATAGATCCAACTGCTGTGttaggTCCAAATGTGTCCATAGGAACAGGCGTAACGATCGGTGCAGGAGTTCGCGTAAGGGAGTCCATCATCCTCCACGGTGCTACTTTACAGGATCACAGCTGTGTGTTGAACAGTATTGTGGGTTGGGGCAGCACCATTGGCAAATGGTCCAGAGTAGAAGGGACCCCTAGTGACCCGAATCCTAATGACCCATATGCCAAAATTGACAGCGAGACACTGTTCAGAGATGGAAAACTAACACCGTCCATTACAATTCTAgGCTGTAATGTAAATATCCCATCGGAGGTCATCATACTCAACTCCATCGTCCTGCCACATAAAGACCTCAACAGAAGCTTCAAAAACCAGATCATATTATAGGTTCAATCATTTGTACCTGTCagtcttatttaaataaaacaggtATTTGAAAATGATGGATGAATCATCTGAAGATTCAGTGGCATTTGTGTTGATGTCTGCTACTGTAATTTGCATTTACCATTGTACAGTGTTACAGTGTAGAATGTCTTTGTCAAACTGTTTCTGAAATGacttgaaattaattttatttacagcttGTTGGCTCCCTCTTGCCAGTGAAACGTCAAAGATATTCAAAAAAAGCTGCTGTTTATTTGTGCAGTCTGTTACTATTTGTTCTTACAGCATTTAACTTgccatgaaaaaaacaaaaatgaagacaaatgGTAAAATCTTGTAATTGGATACAAGTTGTGTtggtaattgttttaaataattgatgtTTCTGTGACTGCTCGCTGTATGAAAGCTGAGTGCAGTGCAAGAGTCAGACGTctgcaataaattatattttgattaagtCACAAAAGGTAATAAAGTAATTTACTGCTGCCCTTGTAGAAAA

Function

GO:

id name namespace
GO:0009298 GDP-mannose biosynthetic process biological_process
GO:0004475 mannose-1-phosphate guanylyltransferase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG:

id description
K00966 GMPP; mannose-1-phosphate guanylyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101819 lncRNA downstream 230446 8918541 ~ 8919746 (-) True G68857
TU101798 lncRNA downstream 325805 8822356 ~ 8824387 (-) True G68844
TU101797 lncRNA downstream 325805 8822765 ~ 8824387 (-) False G68844
TU101792 lncRNA downstream 332574 8816520 ~ 8817618 (-) True G68839
TU101782 lncRNA downstream 344787 8802385 ~ 8805405 (-) True G68830
TU101959 lncRNA upstream 82837 9238117 ~ 9238462 (-) True G68948
TU101996 lncRNA upstream 452024 9607304 ~ 9610739 (-) True G68981
TU102008 lncRNA upstream 476753 9632033 ~ 9642612 (-) False G68987
TU102006 lncRNA upstream 478583 9633863 ~ 9652602 (-) True G68987
TU102014 lncRNA upstream 482687 9637967 ~ 9652602 (-) False G68987
XM_043249164.1 mRNA downstream 101390 8978518 ~ 9048802 (-) True asic4a
XM_043248305.1 mRNA downstream 188818 8942859 ~ 8961374 (-) True wnt6b
XM_043248344.1 mRNA downstream 215861 8919863 ~ 8934331 (-) True wnt10a
XM_043248259.1 mRNA downstream 271104 8876681 ~ 8879088 (-) True cdk5r2b
XM_043248055.1 mRNA downstream 323143 8824663 ~ 8827049 (-) True si:dkey-69o16.5
XM_043249167.1 mRNA upstream 5029 9160309 ~ 9184553 (-) False dars1
XM_043249165.1 mRNA upstream 5029 9160309 ~ 9184552 (-) True dars1
XM_043249166.1 mRNA upstream 5029 9160309 ~ 9184551 (-) False dars1
XM_043249599.1 mRNA upstream 31297 9186577 ~ 9188474 (-) True cxcr4b
XM_043248972.1 mRNA upstream 455739 9611019 ~ 9626167 (-) False nxph2a
unassigned_transcript_1465 other downstream 809177 8340943 ~ 8341015 (-) True trnak-uuu_106
XR_006251804.1 other downstream 1055345 8079136 ~ 8094847 (-) False als2a
TU101496 other downstream 1132087 8014449 ~ 8018105 (-) False LOC122351623
TU101110 other downstream 2001572 7070985 ~ 7148620 (-) False LOC122351350
TU100887 other downstream 2889123 6246900 ~ 6261069 (-) True G68188
TU102057 other upstream 752908 9908188 ~ 9910178 (-) True LOC122351483
XR_006251819.1 other upstream 1278227 10433507 ~ 10441872 (-) False trim13
XR_006251818.1 other upstream 1278227 10433507 ~ 10441872 (-) False trim13
XR_006251820.1 other upstream 1278227 10433507 ~ 10441872 (-) True trim13
XR_006251803.1 other upstream 1359992 10515272 ~ 10519457 (-) False fdx1

Expression Profile