RNA id: XM_043249579.1


Basic Information

Item Value
RNA id XM_043249579.1
length 4616
RNA type mRNA
GC content 0.39
exon number 13
gene id si:dkey-219c10.4
representative False

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 18534652 ~ 18545151 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGTACGCACGCATCGATCGGCAAAGGTTAGAGTGCATCACCATTGTCACCTGAGATGGCaactaaaatcatttattttactgtaaatggaAGACCAGAACAAGCTGAGTTTCCCATTGACTGTCCTGCACAAGATGTTAAAGGTTCAGATCTGGCCGTTGCTCTGGGATTTGACCTCTCTTCTATGGAGAAAAGGTTACAGAGCCTGGAGAAAAGAATACTTACTGAAGCAGCAGAGACACCTGCCATTGTGTATGAGATGAAGAGACAGGTGGAGTCCTTCAGAGAGAAACTGGAGAGCGTTGAGCACCTGAGCTGGTTGGGACTGTTTAAAGACATGTCCGAGGGCACCCACAAGCCCTCCCCATTCTACCATAAAAGAACTCTGCGCAAGACCCGCGAAGAGTGTGAGCACGTCAGGGAAAAGTTCCTGCAAATGAGCTCTCTGGAGGTTTCTGAAGAGGTGAGACAGTATCTTAAAACACCAACCTTTGATAACTGGCAATGGGAGGACGCTGAGATCATGGTGCTGCTCCAGGTGATGTACACAGATCTGGACTTCATCTCAACCTTCAACATTGAGCTGGACGTGTTGCAGCAGTTTCTTTATGAAGTGTACCGCCGCTACAATAACATCCCCTTCCACAACTTCAAGCACTGCTTCTGCGTCACTCAGATGATGTATGGACTAATATGGCTAACAGATCTCAGAAGCAAGATTGACAGTATTGACCTCCTCATCATGCTAACCTCAGCTGTCTGTCATGATCTAGATCACACTGGCTACAACAATGCATACCAGATTAATGCACGCACTGAGCTCGCCTTGAGGTACAATGACATCTCCCCGCTGGAAAACCACCACTGCGCTGTAGCTTTTGAAATCCTGGAAAAGAGTGAAAGCAACATTTTTCGAAACTTGCCGACAGAGCAATACAAAAGAATAAGAGAGGGCATAATTAAGTGTATTCTCGCTACTGATATGACCAGACATACCGAGATCCTCAACAAGTTCAAAGCTATTCTCCCTGTGTTTGACTTCAGCAACAAAGATCACAGAGATGTGTTGATGATGATCATGATTAAAGTGAGCGACATCTCCAATGAAGCGAGACCCATGGATGTGGCAGAACCGTGGCTGGACTGTCTACTGCAGGAGTTCTTTAATCAGAGTGACATGGAGAAGTTGGAGGGTCTTCCTGTCACTCCCTTCATGGATCGAGACAAGGTGACCAAACCGTCTTCTCAGACTGGATTCATCCGCTTtgttctctttcctctcttcaTTGAATTGGCTAATCTTTTCCCCTGTCTGGAGCAACACATCATTGACCCAGTGCGGAAAGCTCTGGACTATTACACAGAGATGGAGAAAGCTCTGGAGAGGGAGAAACAGAACCGGGCCCAGAGTGAGAAGGTGGTCAAGCCCAGCACCTCGAAAGAGCCAGAAACTCAACCGGAACCTGGTGggaccacaaaaacagtcaaCCTCTAATTTAACCTCACACTCCAAAATTTCATTCTataatcaaaatgtcaaaaagcgGAGTTTCAGAATTGTGCTTTAAGGtttaaagtaaatgtgtttacactctcaaaaataaaggtgcttcacaatgCCATAGAAATTTTTGTCTAAATTGTTCCAAAAAGAACCtgtctgtttcacaaaaggtacTTTGTGGCAAAAGAAGGTTCTTTGTGGATCCAAAAATGGTTATCTATGGCATTAAGCACCTTTAATTTTAAGAGTGTGTGCTTTTACCAgctaaatatacttatatatttatatattttaccagctaaatatacttatatagtTTCACTCCATATTTGCAGTGGAGGCCACAAAGTAATAGTACTTATATTTAGGGCTTTCTCATTTCATATAATGTCACACGTTTGCATTATTAACAGCATCTGGTGTAAAACtacttaataaaaagtaataaaatcacagtgtctgctgacttttttctttcttttttaatagaaattcaTCATTTTTGGTCATGAATGTAGTGAACATGCACAGTTAGCCCAGCAGATGGTGCTACTAGAAGCTACAATTTCATAGGCATGAGAGAGGAGGCTATAAAGTGAACTGTATTAATGCTATAAGTGTCACTGCTATGTGCATTATAGAAAGACCCGATGTCACTGATTTTACTGTGCCTCTGAAAAAGTGGGGATTAAAACCAGAAACCATCACAGCACtctttttacattcaaatttattttacaaaagaaaacttACTTCGTTGTACACATCTATTTCCCCCAAAACATATAGCGTCTCTTTATTCTGACGATGCAAATGGATTATTATGCATGCAGTTTTGTATTTCTATCAAATACCGTCCTGCACAAGTAATACCCACAATTCAATTTGAACTCCATTTGAAGCCATTAGGTTGCAGAGGCAGGTAAAGCATTAGCATGCAGCACTGTACACATTTGCATAGTAAATGGATATCACTTCTTTTGGATTAATTTCTCATTGCCTTTTACCAACATGCCATTGCATTAAACAGAATTCTgacttgaggaaaaaaaatctgttgctCTCAGGAAGGAaggtaattttgtttttatcgGGATGGTGGATATATAGGAAGAACattgttttttacaaaatgaatgaattctgTTGACAATTTACCACAGACAGAATGACATTTGAAACTTCATATAGgatcaaaatgcttttaaataaatccaaagAAACATTCCTTTTGCAAAagttgtggggaaaaaaaatcaaacgtACCTTATTATGAAGTTAAGGCACAGAGTTACTGGCTGGGAATGTATTGACCGAAActgcaattaataataatactaatagtaACAGCAATGGTGGTCCTGAGTGTTGGCTACAATACTGACTCCAAAATGACCAAAGCaccttaaagtgcccctattatgggttatgaaaggttcatattttggttttaggactcTCAAACAACAGATTGACATGCATGAAACTTtcttatattatgtatttattttttaccttatttgttcaacgttAAACGATTCTTTTTTAAAACGCCTCCAGTGATTAGTCGATTTCAattaaagctgtgtttgtgagcttttaacgcttcAAGAGCGACACCTAGTtgtaaagaatgaatttgcgcttttcattcagaccaacgcgaaAATATGGGCGggcaacatgaaacggcttgggactccttttaaaaaaagactggtTTCAATTCAGGGTAGCATCTCTCTTTTGAgcgacaataactttatacacggtgcgcTTTCAGACtgaaaactttgcaggacgTTTTCATTCAGCTGTGTTAcgcactgcatgaaaggtcatcctcaaaaatccataattagGGCACTTTAAGACTGTGGATCACACACCAAAATGTGTAACTCTTTCCAAATAAAGGTATGTACATGTAGGGGGAAAAGTAATCTGTATATATGATACTGATTGTGAgccacaaaaactataaactgtttCTTCAAATCCGATTGGCTAATCGCAACATTGTTCCAGGCTCAACAAAAATGTAAGGTGACTAAATAATGCTTAGATTAACTTCTAAAAATAAGGAAAGTTTTGTTTTAGGCATATGATCTAatagaattaataatataatatgaccGATACTATCAGCTGGTTCCCAGTGAGCTCTTTATGCATTTGTAACATCAACCCTCGCATTCTATATGATTCAGGGAATTTTACTGGTTTAAACAAGACATGTGAATAGTATATTAATAGTAGTCTATAGTTCATGAAATATTGCACACAGAAAAAAGAGTGGGCAAGAGAAATGGGGGGTGGCAGTGATCAGAGAATAAGGACACTTTACCCAAACTACATTAACTTCTACTGGCCCCTCAACTGCAGCAAGAAACGTTTCAGAAACGTTGCATTCTAATGCTACGTACCATATATACTGAAAATGGCCTACGGACAGACAGTTTCTTTTCTACTAGTTCTGCACGCGGCAAATCCAGTAGTTTATTACTATCAAAGCTACCTCATCAGAACTGCTCACAGGTAGAACTTACAGCAGACCGGAAACCGGATGAATCCAATCGTTTCCACACCAAACATTTAGTATTAACACTCAGATATGATTAAAACTCCACTATATGAAGCCACTGAAGGATAGGACCAAATGCTTTTTGCAACACAGTAACTATaaaactgaatcaacactgcTTTTGTTCTTTCTCTGAGCATTACGAACACACAACAGCAATCTCTGTGAGAGGAAACACTGTACAGCACAACACAATTAAGGTAATCGGATTGCGGAACTGTTAAGTACCAAGAAATCAGTCGAGAAAAATGCAAACATCAAAATCCagacaacatttaaataactgtGCCAACACCAATTCAAGCATTGTCTGGACTGTTCATCAAAcatcatttagcatttttcattGAGTAACTGACCATGGAATTGGAGGTCTAatgcaatagaaaaaaataatttttttttgtgtcatgaTCATGTAAGCCAGCAGCACAACCAAGTAGTTTTGCACAAGCAAAGGCAGGGATGACACCTGATTTGTTCATCTGAgcacttcagtgtgtgtgtgtgtgtgaacagcttttgcaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU105581 lncRNA downstream 23124 18511173 ~ 18511528 (-) True G71341
TU105579 lncRNA downstream 24643 18508440 ~ 18510009 (-) True G71339
TU105535 lncRNA downstream 168414 18251260 ~ 18366238 (-) False sema5ba
TU105536 lncRNA downstream 270152 18251260 ~ 18264500 (-) False sema5ba
TU105518 lncRNA downstream 307865 18222314 ~ 18226787 (-) True G71293
TU105676 lncRNA upstream 63676 18608827 ~ 18695465 (-) True G71389
TU105682 lncRNA upstream 63676 18608827 ~ 18697031 (-) False G71389
TU105697 lncRNA upstream 108476 18653627 ~ 18654751 (-) True G71400
TU105739 lncRNA upstream 143347 18688498 ~ 18692089 (-) True G71424
TU105832 lncRNA upstream 192605 18737756 ~ 18742225 (-) True G71471
XM_043249567.1 mRNA downstream 34758 18494086 ~ 18499894 (-) True hacd2
XM_043249266.1 mRNA downstream 41779 18427072 ~ 18492873 (-) True adcy5
XM_043249267.1 mRNA downstream 41783 18427072 ~ 18492869 (-) False adcy5
XM_043248996.1 mRNA downstream 168385 18251236 ~ 18366267 (-) True sema5ba
XM_043249405.1 mRNA downstream 329191 18197126 ~ 18205461 (-) True hspbap1
XM_043248382.1 mRNA upstream 81266 18626417 ~ 18633604 (-) False ccdc93
XM_043248381.1 mRNA upstream 81266 18626417 ~ 18633604 (-) True ccdc93
XM_043248378.1 mRNA upstream 97319 18642470 ~ 18649055 (-) True znf142
XM_043248798.1 mRNA upstream 164077 18709228 ~ 18720447 (-) True tgfbr2l
XM_043248514.1 mRNA upstream 340293 18885444 ~ 18890055 (-) True myl1
TU105258 other downstream 1279161 17235872 ~ 17255491 (-) True G71118
TU104984 other downstream 1710877 16817140 ~ 16823775 (-) True G70986
TU104983 other downstream 1710958 16817140 ~ 16823694 (-) False G70986
TU104521 other downstream 2762788 15771421 ~ 15771864 (-) True G70663
XR_006251733.1 other downstream 3135215 15389849 ~ 15399437 (-) False tmtc4
XR_006251863.1 other upstream 24604 18569755 ~ 18569882 (-) True LOC122352185
TU106113 other upstream 1175347 19720498 ~ 19721737 (-) False ankar
TU106134 other upstream 1251106 19796257 ~ 19804599 (-) False glsb
XR_006251780.1 other upstream 1336673 19881824 ~ 19893315 (-) False mfsd6b
TU106614 other upstream 1944013 20489164 ~ 20503890 (-) False G71938

Expression Profile