RNA id: XM_043249580.1


Basic Information

Item Value
RNA id XM_043249580.1
length 5935
RNA type mRNA
GC content 0.40
exon number 13
gene id cacnb4a
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 18518212 ~ 18537051 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTGAGGAAGGCTCTGTTTTCCTGCTCTGTTTGTGGAAGCTTGATAAAATGCCAGGTCTTTGCAGCCTCTGGGGAGAGCCCCACTTCTCTATGATGTGATCGATCACACTTCATCCTCATTAATACAATACGCTGGCTTCAGGAACGGAAGGGCGATTGCCTTCTGCTTGACATTCGTCCTTCGGTGGTCTTATTGTGGGCAAGGGGATCGTAAGAGAGCCCTGTTAGAAATACTCTCGCTGGAGCTTTCTTATCCCACATTTGTATCGTTAAGGTGATCGTTGAGGAATATCAGACCTCCATGTACGACAATTTGTACCTGCATGGATTTGAAGACTCAGAGGCGGGTTCCGCCGATTCCTACACTAGCAGACCATCCGACTCAGATGTCTCTCTGGATGAAGAGCAGGGCGGCCGGCAGGAGAAAGAACAGCAGGCCACCGTTCAGCTGGAAAGGGCAAAGGCCAAAGCTGTGGCCTTTGCCGTGAGGACAAACGTCAGCTACTGTGGTGCCCTGGATGAGGACGTTCCTGTCGCTGGCACTGCCATTTCTTTTGACGCTAAAGACTTCCTTCACATTAAGGAGAAATACAACAATGACTGGTGGATTGGGAGACTGGTGAAGGAAGGTTGCGATATCGGTTTCATCCCCAGTCCCTTAAAACTAGAAAACATTCGCTTACAGCAGGAGCAAAAAAGGGGCCGCTTCCATGGGAAGTCCAGTGGGAACTCTTCTTCCAGTCTGGGTGAAATGGTGTCAGGCACCTTCAAGCCCAACACCGGTTCTGCAGgtaaacagaaacagaaagtgGCCGAGCACATTCCTCCATACGATGTGGTCCCTTCCATGAGGCCGGTGGTCTTAGTTGGCCCATCGCTTAAAGGATATGAGGTGACAGATATGATGCAGAAAGCGCTTTTTGACTTCCTGAAACACAGGTTTGAAGGCAGgatatcaatcacaagagtAACCGCAGACATCTCTTTGGCTAAGAGATCTGTGCTGAATAACCCTAGTAAGAGAGCCATTATTGAGAGATCCAACACCAGATCCAACCTAGCGGAGGTTCAGAGTGAGATCGAGCGAATCTTTGAATTGGCCAGATCCCTTCAGCTGGTTGTGCTTGATGCCGACACGATCAACCATCCAGCCCAGCTCATCAAGACTTCTTTAGCTCCCATTATTGTCCATGTCAAAGTGTCTTCTCCCAAGGTATTGCAACGGCTGATCAAATCAAGGGGGAAGTCTCAAAGcaagcatttaaatgtacaactGGTGGCAGCAGACAAACTAGCTCAGTGTCCTCCAGAAATGTTTGATGTCATTTTGGATGAGAACCAGCTCGAGGATGCATGTGAACATCTGGCTGAGTATCTGGAGGCCTACTGGCGTGCAACTCACACGTCCCTCAGCACTCCTCTGAACCCTCTGCTGGGCCGCAACCTGGGCTCCACTGCGCTCTCACCGTACCCCACAGCCATCTCTGGACTACAGagccaaagaaataaaaacagcaaccaCATCAGTGACAACTCTCCAATGGAGCGCCGCAGCTTGATGACGTCCGACGAGAACTACCACAACAACGAGCGGCAAAAGAAGAGTCATAACCGCCTGTCCTCCAGCTCCCAGCAAAGTCGAGACCACTACCCTCTGGTAGAGGAGGACTACCACGATCCCTATCAAGATGCGTACAAACCTCACCGCAACCGGGGGTCCCCCGGGGGCTACAGCAACGACTCACGGCACAGACTCTGAACATCCAATCCACTTCAGCCAGAGCTATGAGATAAATCTCACGTCATCGTGTAAACCCTTTCTGAAAATGCAGTGCATTGCGTTCACTCTGACCATATATGGGCCATCGTAACTAAAAGCAAAATCCAAGCACCCGGTCCGTCTATGTAAGGCAGTTGTTTGCAGCCCTTGCGCATCTCTTGTCAGGCAGAtggaggtgctgattttatCTGCAACGGTTGAGATAAGATGCTCTTCTGGGGAGTGACAACTATAGTACCATCTGCTCCTTCCAGTTTCTCCTAGTAGAGCCTCCTGCATTTAATTGCTAACCAAAGCCCCGCACTGTCTATATTTGCAGGACGTTTTGTGGTGGCATGCTAATTTTCACCCTGAACTAGTGCCGGCATGCAGAAATGCTCAACAGTGCCAAGACCCAATCAGCACAGAGCCTTTTTGCACGATTCCAGTAGCCAATGGAAGAGTCATGCGTTCACCGTTCTATTTCTTCCTGTCTTTAGTATTTATGTTAAATGGTGTCTTAATTTGCCCTAAAAGCCTCAGGTGCGAAGCAGGAATGCTTCATAGGTGCCAAAATATAAGAGGTTTCTTTTCCCACCTTCTATTTTCATAAAATCTCTACAAACAGTGTCAGCAGGCACTTTCTTTCtgagcaaaacacaaaagatagCAACATATTATCCTTTTCTATGTATACCATAATGCCTATAGTTCACTCAGCGCTTTGCCAGGGCCTACAAGAGGAATGTTGTTGCAAAAAATTACGCCAGAGGACCAGTATCAGGTagattttatctttttaaattacTCCATTACttggtagtagtagtaaataaacaaatctaatGAAATCTTATAAGATTTAGAGAttatatttcacccaaaaataataaataaataaatataaacaatataaatgcaatgaaGCCTGTTTTAGGACCATTAAGACTCAAgttgtgacattattttcatttaaaaaattaagcaatGTTCCTCTATCTTAatttctgcaataaaaaaagtagatttttttgtttgtttacactgTAAAGAATTATGCATCATTGTAATATTCGTTCAGTatcaataattacattaaatagtgTTATTTGgaataatgtgttaaaaaacgctataaattatttagaattaaaataggATTTAAAGGGTAAATTGTGCTTAATTATGATTaacataatattgtaataaaaaaaaaatccaaatcaattatattttctttatgctctctatatatatatacatatgtgtgtgagtgtttgtgtattttatttatttacagatttatagatttttgtgtttgtgtgtgtgtgtgtgtccctgagCATGTTTTATGAGATTCTCAGGGGTTTTGCTGAGCTCATATGACACTCTGATTGAAATGGCACAGTAGCCTGTGTCGTTGAAATACATGGCAGCTGAGTGGAAATCCATTCTGTAAATGAGGGAGTGTTTACGCGATACAATTTTCAGCGTTTTGAGTAATCTGTCGTGTAAACATACCCTCAGACAGATCTGTGGATTACCATAAAGTTCCTCTATTCTAGTAAGCTCTAGTAAGTCATTGATTATTATGACTGCTACCAGTCTTGAACTATTTAGTGTATTTAGCCTGACCTATAGTATGGTTACTGGTTGCCATAGCAACAGACTATGATACaacattaaaactataaaaggaaatgcattttttattgtttgttttacgTGAAAGTTTTAcctgtgattattttttttctttttttttttttttttgttatttgcaaaagctgttcacacacacacacacactgaagtgcTCAGATGAACAAATCAGGTGTCATCCCTGCCTTTGCTTGTGCAAAACTACTTGGTTGTGCTGCTGGCTTACATGAtcatgacacaaaaaaaaattatttttttctattgcatTAGACCTCCAATTCCATGGTCAGTTACTCaatgaaaaatgctaaatgatgTTTGATGAACAGTCCAGACAATGCTTGAATTGGTGTTGGCacagttatttaaatgttgtctGGATTTTGATGTTTGCATTTTTCTCGACTGATTTCTTGGTACTTAACAGTTCCGCAATCCGATTACCTTAATTGTGTTGTGCTGTACAGTGTTTCCTCTCACAGAGATTGCTGTTGTGTGTTCGTAATGCTCAGAGAAAGAACAAAAgcagtgttgattcagttttATAGTTACTGTGTTGCAAAAAGCATTTGGTCCTATCCTTCAGTGGCTTCATATAGTGGAGTTTTAATCATATCTGAGTGTTAATACTAAATGTTTGGTGTGGAAACGATTGGATTCATCCGGTTTCCGGTCTGCTGTAAGTTCTACCTGTGAGCAGTTCTGATGAGGTAGCTTTGATAGTAATAAACTACTGGATTTGCCGCGTGCAGAACTAGTAGAAAAGAAACTGTCTGTCCGTAGGCCATTTTCAGTATATATGGTACGTAGCATTAGAATGCAACGTTTCTGAAACGTTTCTTGCTGCAGTTGAGGGGCCAGTAGAAGTTAATGTAGTTTGGGTAAAGTGTCCTTATTCTCTGATCACTGCCACCCCCCATTTCTCTTGCCCACTCTTTTTTCTGTGTGCAATATTTCATGAACTATAGACTACTATTAATATACTATTCACATGTCTTGTTTAAACCAGTAAAATTCCCTGAATCATATAGAATGCGAGGGTTGATGTTACAAATGCATAAAGAGCTCACTGGGAACCAGCTGATAGTATCggtcatattatattattaattctatTAGATCATATGCCTAAAACAAAACTTTCCTTATTTTTAGAAGTTAATCTAAGCATTATTTAGTCACCTTACATTTTTGTTGAGCCTGGAACAATGTTGCGATTAGCCAATCGGATTTGAAGaaacagtttatagtttttgtggcTCACAATCAGTATCATATATACAGATTACTTTTCCCCCTACATGTACATACCTTTATTTGGAAAGAGTTACACATTTTGGTGTGTGATCCACAGTCTTAAAGTGCCctaattatggatttttgaggatgacctttcatgcagtgcgTAACACAGCTGAATGAAAAcgtcctgcaaagttttcaGTCTGAAAgcgcaccgtgtataaagttattgtcgcTCAAAAGAGAGATGCTACCCTGAATTGAAaccagtctttttttaaaaggagtcccaagccgtttcatgttgccCGCCCATATTttcgcgttggtctgaatgaaaagcgcaaattcattctttacaACTAGGTGTCGCTCTTgaagcgttaaaagctcacaaacacagctttaatTGAAATCGACTAATCACTGGAGGCGTTTTAAAAAAGAATCGTTTaacgttgaacaaataaggtaaaaaataaatacataatataagaAAGTTTCATGCATGTCAATCTGTTGTTTGAgagtcctaaaaccaaaatatgaacctttcataacccataataggggcactttaaggtGCTTTGGTCATTTTGGAGTCAGTATTGTAGCCAACACTCAGGACCACCATTGCTGTtactattagtattattattaattgcagTTTCGGTCAATACATTCCCAGCCAGTAACTCTGTGCCTTAACTTCATAATAAGGTacgtttgattttttttccccacaactTTTGCAAAAGGAATGTTTctttggatttatttaaaagcattttgatcCTATATGAAGTTTCAAATGTCATTCTGTCTGTGGTAAATTGTCAAcagaattcattcattttgtaaaaaacaatGTTCTTCCTATATATCCACCATCCcgataaaaacaaaattacctTCCTTCCTGAGagcaacagattttttttcctcaagtcAGAATTCTGTTTAATGCAATGGCATGTTGGTAAAAGGCAATGAGAAATTAATCCAAAAGAAGTGATATCCATTTACTATGCAAATGTGTACAGTGCTGCATGCTAATGCTTTACCTGCCTCTGCAACCTAATGGCTTCAAATGGAGTTCAAATTGAATTGTGGGTATTACTTGTGCAGGACGGTATTTGATAGAAATACAAAACTGCATGCATAATAATCCATTTGCATCGTCAGAATAAAGAGACGCTATATGTTTTGGGGGAAATAGATGTGTACAACGAAGTaagttttcttttgtaaaataaatttgaatgtaaaaaga

Function

GO:

id name namespace
GO:0070588 calcium ion transmembrane transport biological_process
GO:0055113 epiboly involved in gastrulation with mouth forming second biological_process
GO:0005891 voltage-gated calcium channel complex cellular_component
GO:0005245 voltage-gated calcium channel activity molecular_function

KEGG:

id description
K04865 CACNB4; voltage-dependent calcium channel beta-4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU105387 lncRNA upstream 487664 18028361 ~ 18030548 (+) True G71221
TU105314 lncRNA upstream 875774 17641910 ~ 17642438 (+) True G71167
TU105308 lncRNA upstream 910382 17607512 ~ 17607830 (+) True G71162
TU105277 lncRNA upstream 1177295 17340700 ~ 17340917 (+) True G71133
TU105276 lncRNA upstream 1177643 17340342 ~ 17340569 (+) True G71132
TU105571 lncRNA downstream 1429 18538480 ~ 18538700 (+) True G71331
TU105573 lncRNA downstream 3832 18540883 ~ 18541336 (+) True G71333
TU105574 lncRNA downstream 6723 18543774 ~ 18543998 (+) True G71334
TU105770 lncRNA downstream 210860 18747911 ~ 18892052 (+) True G71442
TU105772 lncRNA downstream 280087 18817138 ~ 18892052 (+) False G71442
XM_043249187.1 mRNA upstream 8186 18500302 ~ 18510026 (+) True stam2
XM_043249667.1 mRNA upstream 93144 18416183 ~ 18425068 (+) True sec22a
XM_043249360.1 mRNA upstream 105571 18368743 ~ 18412641 (+) True pdia5
XM_043249361.1 mRNA upstream 115107 18368743 ~ 18403105 (+) False pdia5
XM_043249404.1 mRNA upstream 277494 18205648 ~ 18240718 (+) True slc49a4
XM_043248059.1 mRNA downstream 9185 18546236 ~ 18549389 (+) True nifk
XM_043249613.1 mRNA downstream 12885 18549936 ~ 18610928 (+) False clasp1a
XM_043249620.1 mRNA downstream 12885 18549936 ~ 18610928 (+) False clasp1a
XM_043249625.1 mRNA downstream 12886 18549937 ~ 18610928 (+) False clasp1a
XM_043249623.1 mRNA downstream 12886 18549937 ~ 18610928 (+) False clasp1a
XR_006251816.1 other upstream 568905 17736006 ~ 17949307 (+) False lrp1bb
TU105274 other upstream 1178590 17339127 ~ 17339622 (+) True G71130
TU105185 other upstream 1311707 17203797 ~ 17206505 (+) False jam2b
TU105078 other upstream 1598922 16916761 ~ 16919290 (+) True si:ch211-218d20.15
TU104753 other upstream 1768517 16745899 ~ 16749695 (+) False mpc2b
XR_006251864.1 other downstream 10109 18547160 ~ 18547282 (+) True LOC122352186
XR_006251866.1 other downstream 11430 18548481 ~ 18548607 (+) True LOC122352188
TU105623 other downstream 13227 18550278 ~ 18552882 (+) False clasp1a
XR_006251851.1 other downstream 74944 18611995 ~ 18619387 (+) False tfcp2l1
XR_006251852.1 other downstream 74945 18611996 ~ 18619387 (+) False tfcp2l1

Expression Profile