RNA id: XM_043249593.1


Basic Information

Item Value
RNA id XM_043249593.1
length 2975
RNA type mRNA
GC content 0.45
exon number 18
gene id abcb6b
representative False

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 7855221 ~ 7881034 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tttaaaaaactaCTAGCGAGCGACATTTGCTGCACGAGCACGTCTTTCCCCTAACagagaaaacagcattttcGGTGTTTAAAAGCGTCAGCGTTTTCATTTAACATCCGAGCCACATGACCACAAGTCTATCAGTCATGTGAATCCTGCCCATAAGACACGCAGACAGCGTTTCCCGTTCAGCTCGATACGGTCGGTATAATCGTTAGAAATCCGTGCCCGCGctaatatgcactttttttaaacccttGCTAATTGATAGACTGCAATACACTTCAATGGAGAAAAGCGTTCAGAGTGTATTTAGATTGTACAATGGCACAGAAGTACTCTAAAAGACACACGAAACAACCAAAGGCACTGGCAAATGAAACCGAGCGAGCATCACTTGCACTGACTGTAGAGCGAGGTCAAGTGGAGCTGGTCTCTGGCTCAGCATGGCAGGGCTTCAGGAGGAAAGTGTGTCTGCTGGTGCCCTACATGTGGCCCAGGGGAAGTGTGGGGCTGCAGGCTCTGGTCATCCTGTGTGTCGGGCTGCTGGGACTCGAGCGGCTCATCAATGTGTTTGTACCCATTTACAGCAGGAATATAGTGAACCAGCTGTCGGTGACGGAGAGCTGGAGTACCCTGGCCTTCACGGTCTGTGTTTACGTCCTCCTTAAGTTCTTGCAGGGCGGAGGGGTAGGGACATCAGGGTTCGTCAGTAACTTGCGCAGCTTCCTGTGGACTTATGTCCAGCAGCACACCAGCCGTGTAGTGCAGGTCCGTCTTTTCGCTCACTTGCATGACCTCTCTCTCCGCTGGCATCTGGGCCGACGCACCGGAGATGTCCTGCGCAGCATTGACCGTGGAACCTCCTCAGTCAACAACTTGTTAAGCTATATTGTGTTCAGCATTGTACCCACTATTGCTGACGTCGTCATTGCCATCATCTATTTTGTGACGTACTTCAGTGCCTGGTTCGGcctcattgttttcatttgcatgtttcTCTACCTCGCCATCACCATCATTATCACTGAATGGAGGACCAAGTACAGGCGGGAAATGAACACACAGGACAACATTGCCAAGTCAAAAGCAGTAGACTCGCTTCTCAACTTTGAAACCGTAAAGTACTACAATTCAGAGAGTTTTGAAGTCAGGCGCTTTGAGGATGCCATCCTGAAATATCAGGCATGTGAATGGAAGACCAATGCCTCCCTGGCTCTCCTGAACCAAACTCAGAACCTGATCATTGGGTTGGGCCTGTTGGCTGGATCCCTGCTTTGTGCATACTATGTTACAGTGGACAAGTTTAAAGTCGGTGACTACGTTCTTTTTGGAACCTACATTATTCAGCTCTACACTCCACTCAACTGGTTTGGTACATATTATAGAATGATCCAAAGTGCGTTTGTTGACATGGAGAGCATGTTGGATCTGCTAACCGAGGAAAAAGAGGTAAAGGACGATGTGAATGCAGGAGACCTGTTGTTCACAAAAGGAAGGGTTGATTTCCAGAACGTGTGCTTTAGTTACACTGCTGGGAAAGAAATTCTCAGTCAAGTCTCATTCACAGTGATGCCTGGTCAGACAGTTGCActgGTCGGTCCGTCCGGATCAGGAAAAAGCACCATCATCCGTTTGCTTTTCCGCTTTTATGACGTACAGGGTGGCTGCATCCTCATCGATGGTCAGGACATCTCTAAGgTGAAACAGACCTCTCTTCGATCCTACATTGGTGTAGTTCCTCAGGACACCGTTCTTTTCAATGATAACATCCGTGAAAACATCCGCTATGGACGCATATCTGCAAGTGACCAAGAAGTAGAAGAAGCTGCAGAGGCTGCTGATATCCACCAGAAGATATTATCCTTTCCAAACGGATATGATACTGAGGTGGGCGAAAGGGGTCTGAAGTTGAGCGGAGGGGAGAAACAGAGAGTGGCCATCGCTCGCACAATCCTAAAATCTCCTCGCGTTATTTTGCTCGACGAAGCTACGTCTGCTTTGGACAGTCAAACGGAGCGTAATATTCAGGCTTCTCTCGCTAAGGTGTGTGCCAATCACACCACTCTGGTCGTGGCACACAGGTTATCCACCATCATCAACGCCAATCAAATTCTGGTTCTTCATGATGGGCAGATTGCAGAACAAGGAAGGCACGAGGAGCTGCTGGCCATGGGTGGACTGTACGCAGCCATGTGGTTAAAACAGCAGCAAACCCAAGAGTCAGAGGTCTCTATAGATGAAGAACCGCAGGAGCCACAGCAGAGTGGCTGAAGCTGATGGAGCGGCGATGATGAATGGTGATGGGTCAAATCAATCAGGAAAATGGTAAAAGAGCCCACTGAGCTCCAGAGTTCATCTCAGACACAGGGGCACCAGACTGCACCAAAGTAATAAAGTAAGAAGAGTGTTTCTCAGGGAAAGGTGTCATTAAAAATCTACCAATCATTGAGTACCTCTAAatatgttaaagggatagttcaccataaaatgaaaattttccTCATTTGCTCATTActgtcatgttgttccaaacttgtatgactttttttctgtgcaaaatGAAAGCAgatactgtgtttttaatttgagtgTTAGCGGTGGTTCCCATTGACATGCACACTTGTCCCACATGTCCCACAAAGAAAGTCATAGAGGCGTGACAGCATTTCGCtttttggtgatttttttttttttttttttgaaatgcttAGGAAAtagcattaatgtaaaaatactgtgaTGTGATGACTACATTCAGTCATTTGttacattgttttttctttatattacataaacatacaaCGCTTTGTTTATACTTCTATCACTGTAAACTGAGGAGATGTGGAGGTATCTCTATCATCTACAGATGGACAGATACTAGGTAACATGAACACAAACATTTAAGTCACCTTTATGTATTGCTTTGTTCATGTTACTCTGTATTTAAAGAAGCACATAGTAAATCCTATGAACTACATGTA

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0061072 iris morphogenesis biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0042626 ATPase-coupled transmembrane transporter activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101216 lncRNA upstream 943 7853481 ~ 7854278 (+) True G68446
TU101200 lncRNA upstream 518862 7335491 ~ 7336359 (+) True G68435
TU101154 lncRNA upstream 553726 7298033 ~ 7301495 (+) False G68397
TU101158 lncRNA upstream 556936 7280767 ~ 7298285 (+) True G68397
TU101189 lncRNA upstream 591508 7262541 ~ 7263713 (+) True G68424
TU101545 lncRNA downstream 322819 8203853 ~ 8205963 (+) True G68668
TU101562 lncRNA downstream 341553 8222587 ~ 8222817 (+) True G68678
TU101678 lncRNA downstream 621722 8502756 ~ 8506143 (+) False igf2bp2a
XR_006251751.1 lncRNA downstream 719690 8600724 ~ 8614984 (+) True LOC122351403
TU101758 lncRNA downstream 945178 8826212 ~ 8827046 (+) True G68808
XM_043248784.1 mRNA upstream 33327 7756776 ~ 7821894 (+) False nrp2b
XM_043248785.1 mRNA upstream 36387 7756774 ~ 7818834 (+) True nrp2b
XM_043249478.1 mRNA upstream 126430 7473998 ~ 7728791 (+) False pard3bb
XM_043249251.1 mRNA downstream 12581 7893615 ~ 7907304 (+) True ttll4
XM_043249252.1 mRNA downstream 12581 7893615 ~ 7907304 (+) False ttll4
XM_043248749.1 mRNA downstream 27053 7908087 ~ 7920562 (+) False prkag3b
XM_043248748.1 mRNA downstream 27222 7908256 ~ 7920562 (+) False prkag3b
XM_043248754.1 mRNA downstream 27294 7908328 ~ 7920562 (+) False prkag3b
TU100736 other upstream 1890341 5962967 ~ 5964880 (+) False LOC122351907
TU100723 other upstream 1969468 5883927 ~ 5885753 (+) True G68097
unassigned_transcript_1464 other upstream 2397692 5457458 ~ 5457529 (+) True trnam-cau_112
unassigned_transcript_1463 other upstream 2397958 5457191 ~ 5457263 (+) True trnar-ccu_65
unassigned_transcript_1462 other upstream 2398378 5456772 ~ 5456843 (+) True trnam-cau_111
TU101608 other downstream 460264 8341298 ~ 8342679 (+) False si:ch211-167j6.3
TU101615 other downstream 550111 8431145 ~ 8433483 (+) False sumo3b
TU101764 other downstream 983615 8864649 ~ 8865897 (+) False cryba2b
XR_006251841.1 other downstream 1261558 9142592 ~ 9149666 (+) False si:ch1073-416j23.1
XR_006251842.1 other downstream 1261558 9142592 ~ 9149661 (+) False si:ch1073-416j23.1

Expression Profile