RNA id: XM_043249596.1


Basic Information

Item Value
RNA id XM_043249596.1
length 3989
RNA type mRNA
GC content 0.48
exon number 7
gene id si:ch211-67e16.11
representative False

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 7881178 ~ 7892408 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGGAGTTACAGCACATGACTTTCCATCTGGATGCTGCTCCGAGCACCTTTAATGAAGACAGCTGCATCTCTCCAAACTTCACAAGACCCCTGACTGTCCGACACACACCTCCAGCGGAACAAAGCcgttttaaaagtaactttcccacGAGTCGGGACGTTTCAAGCAGACCTTCACACAGCCAAAGCATGAGGCTCCAGTGCGTTTCCCTCCTCGTCTGCGCTCTGCTCATTGGCGAGTGCTGCGGCTCTCGCCTGGACCGCTGGGTCCGAACCGGACTTCAGTACCTGAAGCTCAACCTGTGCCGGAGGGTCTCTCTGCCGGAGAGCGAGTGCAAGAAGCTGTCCCACCTGCACCTGAGCGGGCTGCTCGTGTACGTGACGGACTCGGGCTCGGGGAAAGTGCTGGCGATCCTGCCGGACTCGTACTCGAGCGGCGCGCCGCAGTCCAAGCAGAGCGGCTTCTCCGCGGACGCGAGCGCGGAGGACGAGCGCAGGGCGAACGAAGAGCTGTACCCCGGCGCGAGCGCGCACGACGCCGCGCTGCTGCTGGACCCCAGCCCCGGCGAGAGCTTCGGACACCCGGTGGTCCTCTTCTACGTGGACTTCAACACAACCAAGAAGAAATGTGCTCACATGGACGGCATTTATCTGGGGGAGGAGTGCTTGACGATGGCCGTGAAGACACGTTGCCAGAACCAGCTGAAGCGGAGGAGGAGCCGCAGCGACCGCATGGCGAGCCGGGCGAGGGCCCGCAGGAGCCCGACGGGCAGAACCGGCCGAGCCGAGCACAGCAGCGGCCTCTGTGAGATTCACTTTCTCCCTCTGGTTGTGGGAGTGAAAGACAGCAACCGAACCCAACGCCTGCACTGTGTAGATCACCCAGACTTTGCCAGATGCCCACAGCCTTTGCCGCTGACCAGCCCCAGCGCACCCATCTCCAGCTGTGAGCTCAATAAAAACACCCGCCGGTGCCATCAGCAACGCCTGGCCACACACCTGTCCTGCCGCCTCTACCAGACCTGTGATCATGCTGTTCTCCTGTCAGGTGGCTGGCAGGAGCAGATAACATACCAACAACATGCAAAGAACCTGCAGCTCTTCTACCAAATGCTGAGGAACAACGGCTTCCACAAGGACCACATAAAGACATTCTTTGCTGGGAACGGACAGGTAGCAGCTAAAGAGACCGAGGGCATGTATCCGGCCACAGAGAAAGAGGTGATCAGGAATCACATCTCCTACATCTGCCGGAAGCAGCACTGCGTGGATTCTCTGGTTCTGTATCTGAACAGCCCAACACGCAACGACGGCACCATGCTGCTCTGGGACCGCAATAACAACGGcattGCAGACCTGAAGGAGCGTTACTCTGTGGGAGAACTGTTGGCGGATCTGGCCGGATGCAGGGCCAGTCGAGTACTGCTGTTTGTGGAGCAGAGCTACAGTGGAGTCCTCAGCAAGAGACTGATGGGATCTCTCAAACACGTCAATGTCGTTCTGCTGAACGGCCTGCCCTGGGTGCACACAGCTGAGTTCTGGGCCTCTCTGCACCCATCCGAGTGCCTCGTAGACCACCTCAGTAAGGGTTCTGCGATTCCTCGACTGGCAGATGCCGCTCTGGGACTGATGAACGTGACTCTGGCCGGTGCTCCGTGCAACTCCACCCCTCCTCTCACCGAAGCCGAAATGAGAAAAGAGTACATGGGCTGCCAGAACCTCCCCACGGCTCTGTGGTACCAAAAACGTCTCAAGACCGACAACAGCAGGAATTGAGCGAACTGACCAGGACTTTCAGAAGGACTAGAGCCAACTCTACAGTTCCCAACACGTAATTCGGACTCTCCAGTGGAGTACTTCCATGAAAAACAAGTACCAACGAGTAGTCCTAGAACTATGACTTTGTATAATGCACAAACTTCAAACCCATGACCAGCGCTTTCctctcacaaacacagagacacacacacatacacacacacacacgcgcacgcaaaACAATCtacctgtgtgtgtgcacttaaTTCACCCGGTGATGCACATAGACCCTGACAAGCTGTTGAGGAACGGAGACTACATAATGTGTGCTTAAGAGATCGAAAGAAGAGGCGGTAATgcaggacagagagagagaaagcgtcTGACATGTCCTCACTTTGAACCTCATCTCCCCTGCTTGCTGCTCCGTAGAAGGCGTCCCGTGGGGAGCGTCCCATGCGAACTTCTCCTCTCTCCGCCTGCCGTGGGGGTTCAGCGCAGGGGCATCCGCGCTCCTTTACCAGAGTGCTCTTCCGTGGGTCATCGCACAGGGCGCGCCTGGAAATGAACAATGGTGACAAGGCCACTCTGAAACACACCTCACACTCACTTGAACATTTCAGGACAAATCTCCCCGTCCCTCCTTCAGCTCAGTGAGGGACAGGGCGGTCCAGCATGATTTAGTAATGAGAAATGTTCCCTCACCACGTCTGGACCCTAGCAGACACTGGGCTCTGCAAGCATGTATTTAAGTCTGACCTCTTATTCCACGCTGTACTAACCACCCTGTCCGCAGTATTCGCTTATCTCCGCAAACATTTAATCGCCAGCCGCCGATAATGTTGACAGTGACGAGAAGGTATTTCGGGCCCCAAGCCAGATCCTGTGGGAATTCATATGCATTCTTCAGAAATGACAGACAGTTGGATGATGTTTTTCTGCAGTGCATCTACTTGCTCAGAAATGTACGCtctcattcaaaagtttggggttagtacgttttttttaatgtttttggaaCAAGCAAGTCTCTATggttcagcatttatttgaccaaaaacaagcaaaaacaggtttcattttaaattatttttttagcctgcagaaatcattccaatatgctggTTTgatgctcgagaaacatttatcatcatcatcatcatcaaacatttcttatttattttcaatcaaTATTTTTCTGGGAAccgtgatgcatttttttcaggatactTTGATGAACACAAAGCATTTAAttaagaacagcattcattggAAACTGAAATCTATAGCATTATAAACATCTTTACTTTCTCATCTGAACAATTgaatgtgtccttgctaaataaaagttttactttatttaaaaaacctactgaccccaaacttttaaacagacTCCCATTTGTTCATACTCTTCTCATAGTATTATTGATGTGAGCGGGCCAAAACCCATCAAACCTCAGTGCATTGTAGCCAATCCTTAACTCGAAGCCTAAATCATTAAAGataaatatctgtttttgtaTAGTTCAGAAATGTGTTATCCTGTAAATATTTCTGTCATGTTCTACTTAATGAATGGATTTTAATGTCAGTTGTCTTAAAGGACTATACATGTGATTGTTTGTGTTAAACCATAGTTGGAGTGAAAAGATGTAAATActctaaataaattaacttttgtaCATAGTCAGGGttgtatttatagatttttttttttatatttacttgacCAACTTGtgcacatttcacaaaaaaaacatacaaaatacataGCTAAGGTTTCCATGAAAGGCAGTAGCTGCTCTTCATAAAGAAAAGTGTTGTTTCTGTGGTTCATAAAAATCCCTTTAATATCCAGCagtttatcttttaaaatgaattacatttctTGTTCAGTTCAGTACAttcaaaaatgcagtttgtttcaattaaaactagaattcaataaagaaaaaaaggaaaaagagaataTGTGAAACACCTCTCAAGTTCAGCatgtcaatattaaaatattggtCTAATGTAAATGATGAGTTTTTCCATGTTTCGAAtctcaaattataaaaatggaTGTGAACAAAACAGACATGATAGATAAGGGGATAGTTCATGAGGCTTGGTAAAACATCCAAACTTTGGTGAAAATCTTTTGACTCAGCCTAAAGAGGTCTGGtggttttttaaattatgtttttggaCGAAGAAATTGGGAAAATCAATTTTTACATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101355 lncRNA downstream 59289 7820008 ~ 7821889 (-) True G68554
TU101356 lncRNA downstream 62346 7815249 ~ 7818832 (-) True G68555
TU101275 lncRNA downstream 499670 7381290 ~ 7381508 (-) True G68489
TU101258 lncRNA downstream 539684 7327829 ~ 7341494 (-) True G68473
TU101108 lncRNA downstream 727224 7146440 ~ 7153954 (-) True LOC122351350
XR_006251831.1 lncRNA upstream 578455 8470863 ~ 8474578 (-) True LOC122352023
TU101773 lncRNA upstream 869363 8761771 ~ 8835225 (-) True G68822
TU101778 lncRNA upstream 901453 8793861 ~ 8801749 (-) True G68826
TU101782 lncRNA upstream 909977 8802385 ~ 8805405 (-) True G68830
TU101792 lncRNA upstream 924112 8816520 ~ 8817618 (-) True G68839
XM_043249676.1 mRNA downstream 531762 7347110 ~ 7349416 (-) True LOC122352131
XM_043249674.1 mRNA downstream 531856 7347110 ~ 7349322 (-) False LOC122352131
XM_043248156.1 mRNA downstream 534892 7343107 ~ 7346286 (-) True tuba8l3
XM_043248157.1 mRNA downstream 544792 7330104 ~ 7336386 (-) True dnajb2
XM_043248159.1 mRNA downstream 544795 7329082 ~ 7336383 (-) False dnajb2
XM_043248744.1 mRNA upstream 45644 7938052 ~ 7947803 (-) True si:ch211-67e16.4
XM_043248746.1 mRNA upstream 47390 7939798 ~ 7947805 (-) False si:ch211-67e16.4
XM_043248745.1 mRNA upstream 48725 7941133 ~ 7947805 (-) False si:ch211-67e16.4
XM_043248747.1 mRNA upstream 51173 7943581 ~ 7947802 (-) False si:ch211-67e16.4
XM_043249602.1 mRNA upstream 55972 7948380 ~ 7952282 (-) False si:ch211-67e16.3
TU101110 other downstream 732558 7070985 ~ 7148620 (-) False LOC122351350
TU100887 other downstream 1620109 6246900 ~ 6261069 (-) True G68188
TU100850 other downstream 1781295 6099347 ~ 6099883 (-) False LOC122351979
TU100782 other downstream 1837253 6043275 ~ 6043925 (-) True G68124
TU100767 other downstream 1958358 5919757 ~ 5922820 (-) False LOC122351463
TU101496 other upstream 122041 8014449 ~ 8018105 (-) False LOC122351623
XR_006251804.1 other upstream 186728 8079136 ~ 8094847 (-) False als2a
unassigned_transcript_1465 other upstream 448535 8340943 ~ 8341015 (-) True trnak-uuu_106
TU102057 other upstream 2015780 9908188 ~ 9910178 (-) True LOC122351483
XR_006251819.1 other upstream 2541099 10433507 ~ 10441872 (-) False trim13

Expression Profile