RNA id: XM_043249599.1


Basic Information

Item Value
RNA id XM_043249599.1
length 1669
RNA type mRNA
GC content 0.42
exon number 2
gene id cxcr4b
representative True

Chromosome Information

Item Value
chromosome id NC_056707.1
NCBI id CM032076.1
chromosome length 26426558
location 9186577 ~ 9188474 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTGACGATCCGTTGACTGAAGCGTGTGGAGACTTTTTGCGCGCTTTTTGCTTTCATCTCTTTGAACAACATGGATTTTTACGATCACATTGTTTTAGACAACAGCTCAGACTCCGGATCTGGAGACTTTGACTTTGACGAATTATGTGACCTATCAGTCAGCAATGACTTCCAGAAGATCTTCCTCCCTACTGTTTATGGGATTATATTTGTCCTGGGGATCATTGGCAATGGACTTGTggtgcttgtgatgggcttccAGAAGAAGTCAAAGAACATGACGGACAAATACAGGTTGCATCTCTCCATCGCCGACCTCCTGTTTGTTCTCACGTTACCCTTTTGGGCTGTGGATGCGGCTAGCGGATGGCTTTTTGGAGGATTTCTGTGCGTCACTGTCAACGTAATCTACACTCTGAATCTGTACAGCAGCGTGCTGATTCTGGCCTTCATCAGCCTGGATAGGTACCTTGCGGTAGTCCGTGCCACAAACAGCCAGAACTTTAGGAGGTTGCTCGCAGAAAAGGTGATCTACCTCGGAGTTTGGCTACCAGCGACCATGCTCACCGTGCCCGATCTGGTTTTCGCCAAAGTCCACAATACGGGCATGAATACGATATGCGAGCTCACCTACCCACAGAAAGCGAACATCGCGTGGAAGGCTACTTTCCGTTTCCAGCACATCATCTTTGGCTTTTTACTGCCTGGGCTGATCATTCTGACCTGCTACTGTATCATCATCTCAAAACTGTCCAAGAACTCCAAGGGGCAGGCCCTGAAGAGGAAGGCACTGAAGACAACTATCATCCTCATCCTCTGCTTCTTCATCTGCTGGTTGCCTTATTGTGGCGGCATCCTGGTGGACGCTCTGGTGATGTTGAATGTCATATCTCACAGCTGCTTCCTGGAGCAGGGTCTGGAGAAATGGATCTTTTTTACTGAGGCGCTTGCATATTTCCACTGCTGTCTCAACCCCATCCTTTATGCTTTCCTGGGAGTCAAATTCAGTAAATCCGCCCGCAACGCTCTGAGCATCAGCAGTAGATCAAGTCACAAGATGCTGACCAAGAAAAGGGGTCCTATATCATCAGTATCTACTGAGTCGGAGTCATCTAGTGTCCTGTCCAGTTAATGGGCACTTTGTACATAAAACTTTTCTATGTGGATGactaagctttttttttttttttttgtacgacAAGACTTTTTACTACACTTTTTGTATATAGTAAACTCATTGTGCTAATTGCTATTTTGTAACACGTTTTATTCAActacttaaattattattatttttttgtgtttttttttttttttttttttactttttactgcaTGACCTAAAAGGCAGAGCCTTGACAAAGTCTGTACTTACAGAAGTTCTTATCAGAAAATGTTACCAAACTGTTGCATAGTCTTTTGTCTGATTCTGAACGtgtattgtaaattatttgtaCATAGTTCattgtttgcgtgtgtgtgtgcgtgcacttAGCTTTTCCTATTCTCctataagcttttttttttaatttattgaaatggTAGCTAAcactgtaaagtaaaaaaagaaaaccaaaaaactatgtaaaagGGGTTGCAATTTAATCATGTcacaaatgttgcatttttacttctgtttcataataaaacctaaaaatcacaaattttaA

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0042119 neutrophil activation biological_process
GO:0090024 negative regulation of neutrophil chemotaxis biological_process
GO:0001764 neuron migration biological_process
GO:0031290 retinal ganglion cell axon guidance biological_process
GO:0050930 induction of positive chemotaxis biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0007281 germ cell development biological_process
GO:0030516 regulation of axon extension biological_process
GO:0031101 fin regeneration biological_process
GO:0048920 posterior lateral line neuromast primordium migration biological_process
GO:0032496 response to lipopolysaccharide biological_process
GO:0008354 germ cell migration biological_process
GO:0001667 ameboidal-type cell migration biological_process
GO:0030900 forebrain development biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016494 C-X-C chemokine receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101819 lncRNA downstream 266831 8918541 ~ 8919746 (-) True G68857
TU101798 lncRNA downstream 362190 8822356 ~ 8824387 (-) True G68844
TU101797 lncRNA downstream 362190 8822765 ~ 8824387 (-) False G68844
TU101792 lncRNA downstream 368959 8816520 ~ 8817618 (-) True G68839
TU101782 lncRNA downstream 381172 8802385 ~ 8805405 (-) True G68830
TU101959 lncRNA upstream 49643 9238117 ~ 9238462 (-) True G68948
TU101996 lncRNA upstream 418830 9607304 ~ 9610739 (-) True G68981
TU102008 lncRNA upstream 443559 9632033 ~ 9642612 (-) False G68987
TU102006 lncRNA upstream 445389 9633863 ~ 9652602 (-) True G68987
TU102014 lncRNA upstream 449493 9637967 ~ 9652602 (-) False G68987
XM_043249167.1 mRNA downstream 2024 9160309 ~ 9184553 (-) False dars1
XM_043249165.1 mRNA downstream 2025 9160309 ~ 9184552 (-) True dars1
XM_043249166.1 mRNA downstream 2026 9160309 ~ 9184551 (-) False dars1
XM_043249577.1 mRNA downstream 31297 9150192 ~ 9155280 (-) False gmppaa
XM_043249576.1 mRNA downstream 31297 9150192 ~ 9155280 (-) True gmppaa
XM_043248972.1 mRNA upstream 422545 9611019 ~ 9626167 (-) False nxph2a
XM_043248973.1 mRNA upstream 423375 9611849 ~ 9626166 (-) True nxph2a
XM_043249502.1 mRNA upstream 469929 9658403 ~ 9669522 (-) False ttf2
XM_043249501.1 mRNA upstream 469929 9658403 ~ 9669522 (-) True ttf2
XM_043249503.1 mRNA upstream 469929 9658403 ~ 9669296 (-) False ttf2
unassigned_transcript_1465 other downstream 845562 8340943 ~ 8341015 (-) True trnak-uuu_106
XR_006251804.1 other downstream 1091730 8079136 ~ 8094847 (-) False als2a
TU101496 other downstream 1168472 8014449 ~ 8018105 (-) False LOC122351623
TU101110 other downstream 2037957 7070985 ~ 7148620 (-) False LOC122351350
TU100887 other downstream 2925508 6246900 ~ 6261069 (-) True G68188
TU102057 other upstream 719714 9908188 ~ 9910178 (-) True LOC122351483
XR_006251819.1 other upstream 1245033 10433507 ~ 10441872 (-) False trim13
XR_006251818.1 other upstream 1245033 10433507 ~ 10441872 (-) False trim13
XR_006251820.1 other upstream 1245033 10433507 ~ 10441872 (-) True trim13
XR_006251803.1 other upstream 1326798 10515272 ~ 10519457 (-) False fdx1

Expression Profile